Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05756 and BPUM_3396

See Amino acid alignment / Visit BSNT_05756 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:19
# Commandline: needle
#    -asequence dna-align/BSNT_05756___rsfA.1.24716.seq
#    -bsequence dna-align/BPUM_3396___rsfA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05756___rsfA-BPUM_3396___rsfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05756___rsfA-BPUM_3396___rsfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05756___rsfA
# 2: BPUM_3396___rsfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 843
# Identity:     575/843 (68.2%)
# Similarity:   575/843 (68.2%)
# Gaps:         108/843 (12.8%)
# Score: 1905.5
# 
#
#=======================================

BSNT_05756___      1 ATGACAAAACAGCGACAAGACGCTTGGTCAGAGGAAAACGATCTGCTTTT     50
                     |||.|||||||..|||||||.|||||||||||||||.|.|||||.|||||
BPUM_3396___r      1 ATGTCAAAACAAAGACAAGATGCTTGGTCAGAGGAAGATGATCTCCTTTT     50

BSNT_05756___     51 AGCCGAAACAGTGCTT-CGGCATGTGAGGGAGGGCAGCACTCAGCTGAAC     99
                     .||.|||||.|| ||| ||.||.|||||.|||||||||||.||||||||.
BPUM_3396___r     51 GGCGGAAACCGT-CTTACGTCACGTGAGAGAGGGCAGCACACAGCTGAAT     99

BSNT_05756___    100 GCCTTTGAAGAAGTCGGCGATAAATTAAACCGGACATCCGCAGCCTGCGG    149
                     ||.|||||||||||.||.||.||..|.|||||.||.||.||.||.|||||
BPUM_3396___r    100 GCATTTGAAGAAGTAGGAGACAAGCTGAACCGTACCTCAGCTGCTTGCGG    149

BSNT_05756___    150 ATTCAGATGGAACGCAGTGGTCCGCCATCAATATGAAAAAGCGCTTCAG-    198
                     .||.||||||||.||.||.||..|.|||||||||||||||||.||  || 
BPUM_3396___r    150 TTTTAGATGGAATGCTGTTGTGAGGCATCAATATGAAAAAGCTCT--AGC    197

BSNT_05756___    199 -CTTGCGAAGAAACAACGAAAACAGCGGATGAGAGCGCTCGGAAACGGGC    247
                      |||||.||.|||||.||.|||||.||.|||.|.||||||||.|||||.|
BPUM_3396___r    198 CCTTGCTAAAAAACAGCGGAAACAACGCATGCGTGCGCTCGGCAACGGCC    247

BSNT_05756___    248 AGCCCGCGAAAAAAAGATTATTATATCAGCCTCCTGC-CGTTGATCCTGA    296
                     ||||.||.||.|||.|||||.|.||||||||    || .||.||   .||
BPUM_3396___r    248 AGCCTGCAAAGAAACGATTACTCTATCAGCC----GCAAGTAGA---AGA    290

BSNT_05756___    297 AA---TCATTCAAGA--------AACCGCTGCAGAAGAGCC------GGT    329
                     ||   |||..|||||        .||.|..||.|  |||||      ||.
BPUM_3396___r    291 AACGGTCACGCAAGAGGAATTCTCACAGGAGCTG--GAGCCAGCGAAGGA    338

BSNT_05756___    330 TAAAACG---GAAACACCTTCTGTCGAAAATGAGCAACCTTTAATGTCTG    376
                     ..|||||   |.|.||.|.||||     ||..||||              
BPUM_3396___r    339 AGAAACGTTTGCACCAGCATCTG-----AAACAGCA--------------    369

BSNT_05756___    377 GCGAACATATGCCTTTTGTTGATGAAAGCTTTAAGGAAGAGTTAGCTAGT    426
                       ||.||..|.|..|||||.||..||||||..||.|||||||||||||||
BPUM_3396___r    370 --GAGCAGCTCCAGTTTGTAGACCAAAGCTACAATGAAGAGTTAGCTAGT    417

BSNT_05756___    427 CTATCACACTTATTGT------CTCCTC------------AAACACCTGC    458
                     .|||||||.|||||||      ||.|||            |||.|||.|.
BPUM_3396___r    418 TTATCACATTTATTGTCACAGGCTTCTCATGTCGTAGAGAAAAAACCAGA    467

BSNT_05756___    459 AGCTGCGCCT---------------GAGATGACGAT-GAATGATG----T    488
                     |||....|||               |||.|.||.|| ||| ||||    |
BPUM_3396___r    468 AGCCAATCCTTTTAGGCAGCAACAGGAGTTAACCATCGAA-GATGTCATT    516

BSNT_05756___    489 GATCCGCTTCCTGCAGAATTACGAAGGCAAT-AACGAGCAATCATCAGCA    537
                     |||    |||.|||.....||.||||||.|| .|| |||||||.||..|.
BPUM_3396___r    517 GAT----TTCTTGCGCCGCTATGAAGGCGATGGAC-AGCAATCCTCTTCC    561

BSNT_05756___    538 TTAAAAATGGAAAACGAG-CGTTTAAAGAAAGAAAATCAGGAA-TTGCAA    585
                     |||...||||||||| || ||.|||||...|||||||.|.||| ||.||.
BPUM_3396___r    562 TTACGCATGGAAAAC-AGCCGGTTAAAACGAGAAAATAACGAACTTTCAC    610

BSNT_05756___    586 AACAAAACAGAGCAGCTAGAGGCAGAAGTTCAAAAGCTTGAAAAAGACCA    635
                     |..||..|| .|||||||||.||||||||..|||||||||||||.||.||
BPUM_3396___r    611 ATAAAGTCA-CGCAGCTAGAAGCAGAAGTGAAAAAGCTTGAAAAGGATCA    659

BSNT_05756___    636 AAAAACGATCCAAGAAGATTATGAAACCTTGGTGAAAATTATGAACAGAG    685
                     ....||.||.|||||||||||||||||..|.||.|||||.||||||.|.|
BPUM_3396___r    660 GCTCACCATTCAAGAAGATTATGAAACACTCGTCAAAATCATGAACCGTG    709

BSNT_05756___    686 CCAGAAAGCTAGTTTTATTTGAAGAAGATGAACA-TGCCTCTCCGTCCTT    734
                     |.|||||.||||||||.||||||||.||.| ||| ||||.||||..||||
BPUM_3396___r    710 CAAGAAAACTAGTTTTGTTTGAAGAGGACG-ACACTGCCGCTCCAACCTT    758

BSNT_05756___    735 CAAAATGGACCGGAACGGCAATTTAGAAAAATTAGCGGAATGA    777
                     .|||||||||||.||||||||..|.||||||.|.||.||||.|
BPUM_3396___r    759 TAAAATGGACCGAAACGGCAACCTCGAAAAAATGGCAGAATAA    801


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05756 and BPUM_3396

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
