Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05754 and BPUM_3395

See Amino acid alignment / Visit BSNT_05754 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:19
# Commandline: needle
#    -asequence dna-align/BSNT_05754___ywzC.1.24716.seq
#    -bsequence dna-align/BPUM_3395___ywzC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05754___ywzC-BPUM_3395___ywzC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05754___ywzC-BPUM_3395___ywzC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05754___ywzC
# 2: BPUM_3395___ywzC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 296
# Identity:     162/296 (54.7%)
# Similarity:   162/296 (54.7%)
# Gaps:          79/296 (26.7%)
# Score: 568.5
# 
#
#=======================================

BSNT_05754___      0 --------------------------------------------------      0
                                                                       
BPUM_3395___y      1 ATGACTCTTGGTTGTCCAACTGTTTCATATAAAATGAAGTTCATCATTGA     50

BSNT_05754___      1 ----------------ATGGCTAATGAATTTCGAGTGTGTGATGATTGCC     34
                                     |||||||||||.|||||.||.|||||.||||||.
BPUM_3395___y     51 AAGGAAGCGTAAGACCATGGCTAATGAGTTTCGCGTATGTGACGATTGCG    100

BSNT_05754___     35 AAGCCACTAATATCAAAACATTGCTGCCGCGTTTGAAAGAAGTGGACCCG     84
                     |.||.||.||..|.||.||.|||.||||.||..|.|||...||.|||||.
BPUM_3395___y    101 ATGCGACGAACCTAAAGACGTTGTTGCCTCGACTCAAATCGGTTGACCCT    150

BSNT_05754___     85 GACGCAAAGGTTGAGGTAGGATGCCAATCTTATTGCGGGCCCGGACGGAA    134
                     ||.|||||..||||..|.||.||.|||||.|||||.||.||.|||||.||
BPUM_3395___y    151 GATGCAAAAATTGAAATTGGCTGTCAATCCTATTGTGGTCCAGGACGAAA    200

BSNT_05754___    135 AAAATCATTTGCTTTTGTGAACAATCGCCCGCTGTCAGCTCCGACAGAGG    184
                     |||..|.|||||.|||||.|||||||||||..|.||.||.||.|||||.|
BPUM_3395___y    201 AAAGGCTTTTGCGTTTGTAAACAATCGCCCATTATCCGCACCAACAGAAG    250

BSNT_05754___    185 ATGAGCTGATTGACAAAGT----AAAAAAG-AAAATAAAAAAGTAA    225
                     |||||.|..|.||.||.||    ||||||| .||||||        
BPUM_3395___y    251 ATGAGTTACTCGAAAAGGTTCAAAAAAAAGTCAAATAA--------    288


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