Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05752 and BPUM_3394

See Amino acid alignment / Visit BSNT_05752 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:19
# Commandline: needle
#    -asequence dna-align/BSNT_05752___ywfO.1.24716.seq
#    -bsequence dna-align/BPUM_3394___ywfO.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05752___ywfO-BPUM_3394___ywfO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05752___ywfO-BPUM_3394___ywfO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05752___ywfO
# 2: BPUM_3394___ywfO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1330
# Identity:    1013/1330 (76.2%)
# Similarity:  1013/1330 (76.2%)
# Gaps:          56/1330 ( 4.2%)
# Score: 3784.0
# 
#
#=======================================

BSNT_05752___      1 ATGGCGTATCCAAATGGAAAATTATCAGAAGAAAAAGTGTTTAAAGATCC     50
                     ||||||||||||||.||.||||||||.||.|||||.||.|||||||||||
BPUM_3394___y      1 ATGGCGTATCCAAAAGGGAAATTATCTGAGGAAAAGGTATTTAAAGATCC     50

BSNT_05752___     51 GGTGCACCGCTATGTTCATGTTCGGGACAAGC--TGATATGGGATTTAAT     98
                     .||||||||.||||||||.||.||||||  ||  |.||||||||||||||
BPUM_3394___y     51 TGTGCACCGTTATGTTCACGTACGGGAC--GCATTAATATGGGATTTAAT     98

BSNT_05752___     99 CGGAACCCGTGAATTTCAGCGTCTCCGCAGAATTAAGCAGCTCGGCACGA    148
                     .|||||..|.|||||||||||.||.|||.|||||||.|||||.||.||.|
BPUM_3394___y     99 AGGAACAAGAGAATTTCAGCGCCTGCGCCGAATTAAACAGCTAGGAACCA    148

BSNT_05752___    149 CCTATTTGACGTTCCATGGGGCTGAGCACAGCCGGTTCAACCATTCTCTC    198
                     |.|||||||||||.|||||.||.||.||||||||.|||||.|||||.|||
BPUM_3394___y    149 CTTATTTGACGTTTCATGGTGCAGAACACAGCCGTTTCAATCATTCGCTC    198

BSNT_05752___    199 GGTGTCTATGAAATTGTCAGAAGAATGGTTGATGACGTCTTTAAAGGCCG    248
                     |||||.||.||.|||||.|||.|.||.||.|||||.||.||.|||||.||
BPUM_3394___y    199 GGTGTATACGAGATTGTGAGACGGATTGTGGATGATGTATTCAAAGGACG    248

BSNT_05752___    249 CCCTGAATGGGATGACAGTGAGCGCGAACTCTGTTTGGCC-----GCGGC    293
                     .||.|||||||||||..|.||.|||||     |.|||.||     |||||
BPUM_3394___y    249 GCCGGAATGGGATGAGGGAGAACGCGA-----GCTTGTCCTGAGTGCGGC    293

BSNT_05752___    294 GCTGCTTCATGACCTCGGGCACGGGCCGTTCTCGCATTCATTTGAAAAGG    343
                     ..||||||||||||||||.||.||.||.||.||.|||||.||||||||||
BPUM_3394___y    294 CTTGCTTCATGACCTCGGACATGGACCATTTTCTCATTCCTTTGAAAAGG    343

BSNT_05752___    344 TCTTTCACCTTGACCACGAGGAT--TTTACAAGAGGTATCATTTTGGGAG    391
                     ||||.|||.|.||.||.||  ||  ||||||||||.|||.|||||.||..
BPUM_3394___y    344 TCTTCCACTTAGATCATGA--ATCGTTTACAAGAGATATTATTTTAGGGC    391

BSNT_05752___    392 ACACGGAGGTTAATCAGGTGCTCAGAAAGGTGAGCCCGGGTTTCCCTCAG    441
                     |.||.||.||.|||.|.|||||..|...||||||....|.||||||..||
BPUM_3394___y    392 AAACCGAAGTCAATGAAGTGCTTCGCCGGGTGAGTGATGATTTCCCGAAG    441

BSNT_05752___    442 GATGTTGCTGAAGTCATTGCCAAAACATATAAAAACAAGCAAGTGGTCAG    491
                     .||||.||.|||||||||||.|||||.|||.|||||||.||.||||||||
BPUM_3394___y    442 CATGTGGCAGAAGTCATTGCGAAAACGTATCAAAACAAACAGGTGGTCAG    491

BSNT_05752___    492 CCTGATTTCGAGTCAGATTGACGCAGACCGCATGGATTACCTGCAGCGCG    541
                     ..||||.||.|||||.||.||.||.|||||.|||||.|||.|||||||.|
BPUM_3394___y    492 TTTGATCTCAAGTCAAATCGATGCCGACCGTATGGACTACTTGCAGCGTG    541

BSNT_05752___    542 ACGCATATTATACGGGCGTCAGCTACGGCCATTTTGATATGGAGCGGATT    591
                     |.||.||.|||||.||||||||||||||||||||||||||||||||.|||
BPUM_3394___y    542 ATGCCTACTATACAGGCGTCAGCTACGGCCATTTTGATATGGAGCGTATT    591

BSNT_05752___    592 CTTCGGGTGATGCGGCCGCGCGAGGATCAGATCGTCATTAAAGAAAGCGG    641
                     .|.||.||||||||.|||.|.||.||||||||.||.||.||..|.|||||
BPUM_3394___y    592 TTGCGCGTGATGCGTCCGAGAGAAGATCAGATTGTGATGAAGCAGAGCGG    641

BSNT_05752___    642 AATGCACGCTGTCGAAGACTATATCATGAGCCGTTACCAAATGTACTGGC    691
                     .|||||.||.|||||.||.|||||.||||||||.||.||||||||.||||
BPUM_3394___y    642 GATGCATGCGGTCGAGGATTATATTATGAGCCGCTATCAAATGTATTGGC    691

BSNT_05752___    692 AGGTCTACTTCCATCCTGTGACTAGAAGTGCAGAGGTCATTTTAACGAAG    741
                     |.|||||.|||||.||.|||||..|.|||||.||.||||||||||||||.
BPUM_3394___y    692 AAGTCTATTTCCACCCCGTGACACGCAGTGCGGAAGTCATTTTAACGAAA    741

BSNT_05752___    742 ATTCTTCACAGGGCGAAGCAGCTGCATGATGAA--GGCTATGTCTTCACT    789
                     |||||.||..|.||.||..||||||||||  ||  ||.|||.|.|||||.
BPUM_3394___y    742 ATTCTCCATCGTGCAAAAGAGCTGCATGA--AACGGGTTATATTTTCACA    789

BSNT_05752___    790 CACGCTCCGGTTCATTTCTATTCTATTTTTGAAGGAAAATTGACAC--TG    837
                     ||.||.||.||||||||.|||||.||||||||.|||||  ||.|||  ..
BPUM_3394___y    790 CATGCCCCTGTTCATTTTTATTCGATTTTTGAGGGAAA--TGTCACCACA    837

BSNT_05752___    838 GAGGATTATGTAAAGCTGGATGAATCTATTATTTTGTATTACTTCCAGGC    887
                     |||||.|||.|.||.|||||||||||||||.|.||.|.|||.||.|||||
BPUM_3394___y    838 GAGGACTATATTAAACTGGATGAATCTATTGTCTTATTTTATTTTCAGGC    887

BSNT_05752___    888 CTGGGAGGATGAAGAAGA-CGCGATTTTATCCGACTTGTGCCGCAGATTC    936
                     .|||||.||||||||||| |.|| |..|..|.||.|||||||||.|.||.
BPUM_3394___y    888 GTGGGAAGATGAAGAAGATCACG-TGCTGGCTGATTTGTGCCGCCGTTTT    936

BSNT_05752___    937 ATTAACCGCCAGCTT-TTCCAATACGTTGAATTCAATCCGAATGAAGAAA    985
                     ||.||||||| |.|| ||||||||....||.||.||||||||||||||||
BPUM_3394___y    937 ATGAACCGCC-GATTGTTCCAATATACAGAGTTTAATCCGAATGAAGAAA    985

BSNT_05752___    986 TGTCGGCTTATTTTGAGCTGACTTCATTGTTCAAAGAGGCGGGGATCGAT   1035
                     ||.||...|||||..|||||||..|.||||||||.|||||.||.||.|||
BPUM_3394___y    986 TGACGAAATATTTCAAGCTGACCGCCTTGTTCAAGGAGGCAGGCATTGAT   1035

BSNT_05752___   1036 CC-GAGCTATTATTTGGTCGTTGATTCTTCATCAGATCTGCCATACGATT   1084
                     || || |||||||||.|||||.||.|||||.||.||..||||||||||.|
BPUM_3394___y   1036 CCTGA-CTATTATTTAGTCGTCGACTCTTCCTCTGACTTGCCATACGACT   1084

BSNT_05752___   1085 TTTACCGACCAGGAGAGGAAGAGGAGCGTCTGCCGATCCATCTCTTGACG   1134
                     |.|||.|||||||.||||||||.|||.|.|||||.|||||.||.||||||
BPUM_3394___y   1085 TCTACAGACCAGGTGAGGAAGAAGAGAGGCTGCCAATCCACCTTTTGACG   1134

BSNT_05752___   1135 CAAAACGGCCAAATTAAAGAGCTGTCCAGACAGTCGGCTATTGTGGAATC   1184
                     ||||..||.||.||||||||||||||.||||||||.|.||||||.||..|
BPUM_3394___y   1135 CAAAGTGGTCACATTAAAGAGCTGTCGAGACAGTCAGATATTGTTGATGC   1184

BSNT_05752___   1185 CATCTCAGGTAAACGGCGGACGGACCACAAGCTGTACTATCCAAAGGACT   1234
                     |||.||.||||||||..|.||.||.||.||.||.||.|..||.|.|||||
BPUM_3394___y   1185 CATTTCCGGTAAACGAAGAACCGATCATAAACTTTATTTCCCGATGGACT   1234

BSNT_05752___   1235 TGATT-----TGTGACGGCACTAAACATCCGGAAGC----GAAAATGAA-   1274
                     |.|||     |.||.|||    |||       ||||    ||||| ||| 
BPUM_3394___y   1235 TAATTGTAGATATGTCGG----AAA-------AAGCTGAAGAAAA-GAAG   1272

BSNT_05752___   1275 --AATCCGGCAGCTGCTGGGACTGACATAG   1302
                       .|||..|.|||||||.|||.||..|||.
BPUM_3394___y   1273 GCGATCATGAAGCTGCTTGGATTGGGATAA   1302


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