Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05752 and BPUM_3394
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence dna-align/BSNT_05752___ywfO.1.24716.seq
# -bsequence dna-align/BPUM_3394___ywfO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05752___ywfO-BPUM_3394___ywfO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05752___ywfO-BPUM_3394___ywfO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05752___ywfO
# 2: BPUM_3394___ywfO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1330
# Identity: 1013/1330 (76.2%)
# Similarity: 1013/1330 (76.2%)
# Gaps: 56/1330 ( 4.2%)
# Score: 3784.0
#
#
#=======================================
BSNT_05752___ 1 ATGGCGTATCCAAATGGAAAATTATCAGAAGAAAAAGTGTTTAAAGATCC 50
||||||||||||||.||.||||||||.||.|||||.||.|||||||||||
BPUM_3394___y 1 ATGGCGTATCCAAAAGGGAAATTATCTGAGGAAAAGGTATTTAAAGATCC 50
BSNT_05752___ 51 GGTGCACCGCTATGTTCATGTTCGGGACAAGC--TGATATGGGATTTAAT 98
.||||||||.||||||||.||.|||||| || |.||||||||||||||
BPUM_3394___y 51 TGTGCACCGTTATGTTCACGTACGGGAC--GCATTAATATGGGATTTAAT 98
BSNT_05752___ 99 CGGAACCCGTGAATTTCAGCGTCTCCGCAGAATTAAGCAGCTCGGCACGA 148
.|||||..|.|||||||||||.||.|||.|||||||.|||||.||.||.|
BPUM_3394___y 99 AGGAACAAGAGAATTTCAGCGCCTGCGCCGAATTAAACAGCTAGGAACCA 148
BSNT_05752___ 149 CCTATTTGACGTTCCATGGGGCTGAGCACAGCCGGTTCAACCATTCTCTC 198
|.|||||||||||.|||||.||.||.||||||||.|||||.|||||.|||
BPUM_3394___y 149 CTTATTTGACGTTTCATGGTGCAGAACACAGCCGTTTCAATCATTCGCTC 198
BSNT_05752___ 199 GGTGTCTATGAAATTGTCAGAAGAATGGTTGATGACGTCTTTAAAGGCCG 248
|||||.||.||.|||||.|||.|.||.||.|||||.||.||.|||||.||
BPUM_3394___y 199 GGTGTATACGAGATTGTGAGACGGATTGTGGATGATGTATTCAAAGGACG 248
BSNT_05752___ 249 CCCTGAATGGGATGACAGTGAGCGCGAACTCTGTTTGGCC-----GCGGC 293
.||.|||||||||||..|.||.||||| |.|||.|| |||||
BPUM_3394___y 249 GCCGGAATGGGATGAGGGAGAACGCGA-----GCTTGTCCTGAGTGCGGC 293
BSNT_05752___ 294 GCTGCTTCATGACCTCGGGCACGGGCCGTTCTCGCATTCATTTGAAAAGG 343
..||||||||||||||||.||.||.||.||.||.|||||.||||||||||
BPUM_3394___y 294 CTTGCTTCATGACCTCGGACATGGACCATTTTCTCATTCCTTTGAAAAGG 343
BSNT_05752___ 344 TCTTTCACCTTGACCACGAGGAT--TTTACAAGAGGTATCATTTTGGGAG 391
||||.|||.|.||.||.|| || ||||||||||.|||.|||||.||..
BPUM_3394___y 344 TCTTCCACTTAGATCATGA--ATCGTTTACAAGAGATATTATTTTAGGGC 391
BSNT_05752___ 392 ACACGGAGGTTAATCAGGTGCTCAGAAAGGTGAGCCCGGGTTTCCCTCAG 441
|.||.||.||.|||.|.|||||..|...||||||....|.||||||..||
BPUM_3394___y 392 AAACCGAAGTCAATGAAGTGCTTCGCCGGGTGAGTGATGATTTCCCGAAG 441
BSNT_05752___ 442 GATGTTGCTGAAGTCATTGCCAAAACATATAAAAACAAGCAAGTGGTCAG 491
.||||.||.|||||||||||.|||||.|||.|||||||.||.||||||||
BPUM_3394___y 442 CATGTGGCAGAAGTCATTGCGAAAACGTATCAAAACAAACAGGTGGTCAG 491
BSNT_05752___ 492 CCTGATTTCGAGTCAGATTGACGCAGACCGCATGGATTACCTGCAGCGCG 541
..||||.||.|||||.||.||.||.|||||.|||||.|||.|||||||.|
BPUM_3394___y 492 TTTGATCTCAAGTCAAATCGATGCCGACCGTATGGACTACTTGCAGCGTG 541
BSNT_05752___ 542 ACGCATATTATACGGGCGTCAGCTACGGCCATTTTGATATGGAGCGGATT 591
|.||.||.|||||.||||||||||||||||||||||||||||||||.|||
BPUM_3394___y 542 ATGCCTACTATACAGGCGTCAGCTACGGCCATTTTGATATGGAGCGTATT 591
BSNT_05752___ 592 CTTCGGGTGATGCGGCCGCGCGAGGATCAGATCGTCATTAAAGAAAGCGG 641
.|.||.||||||||.|||.|.||.||||||||.||.||.||..|.|||||
BPUM_3394___y 592 TTGCGCGTGATGCGTCCGAGAGAAGATCAGATTGTGATGAAGCAGAGCGG 641
BSNT_05752___ 642 AATGCACGCTGTCGAAGACTATATCATGAGCCGTTACCAAATGTACTGGC 691
.|||||.||.|||||.||.|||||.||||||||.||.||||||||.||||
BPUM_3394___y 642 GATGCATGCGGTCGAGGATTATATTATGAGCCGCTATCAAATGTATTGGC 691
BSNT_05752___ 692 AGGTCTACTTCCATCCTGTGACTAGAAGTGCAGAGGTCATTTTAACGAAG 741
|.|||||.|||||.||.|||||..|.|||||.||.||||||||||||||.
BPUM_3394___y 692 AAGTCTATTTCCACCCCGTGACACGCAGTGCGGAAGTCATTTTAACGAAA 741
BSNT_05752___ 742 ATTCTTCACAGGGCGAAGCAGCTGCATGATGAA--GGCTATGTCTTCACT 789
|||||.||..|.||.||..|||||||||| || ||.|||.|.|||||.
BPUM_3394___y 742 ATTCTCCATCGTGCAAAAGAGCTGCATGA--AACGGGTTATATTTTCACA 789
BSNT_05752___ 790 CACGCTCCGGTTCATTTCTATTCTATTTTTGAAGGAAAATTGACAC--TG 837
||.||.||.||||||||.|||||.||||||||.||||| ||.||| ..
BPUM_3394___y 790 CATGCCCCTGTTCATTTTTATTCGATTTTTGAGGGAAA--TGTCACCACA 837
BSNT_05752___ 838 GAGGATTATGTAAAGCTGGATGAATCTATTATTTTGTATTACTTCCAGGC 887
|||||.|||.|.||.|||||||||||||||.|.||.|.|||.||.|||||
BPUM_3394___y 838 GAGGACTATATTAAACTGGATGAATCTATTGTCTTATTTTATTTTCAGGC 887
BSNT_05752___ 888 CTGGGAGGATGAAGAAGA-CGCGATTTTATCCGACTTGTGCCGCAGATTC 936
.|||||.||||||||||| |.|| |..|..|.||.|||||||||.|.||.
BPUM_3394___y 888 GTGGGAAGATGAAGAAGATCACG-TGCTGGCTGATTTGTGCCGCCGTTTT 936
BSNT_05752___ 937 ATTAACCGCCAGCTT-TTCCAATACGTTGAATTCAATCCGAATGAAGAAA 985
||.||||||| |.|| ||||||||....||.||.||||||||||||||||
BPUM_3394___y 937 ATGAACCGCC-GATTGTTCCAATATACAGAGTTTAATCCGAATGAAGAAA 985
BSNT_05752___ 986 TGTCGGCTTATTTTGAGCTGACTTCATTGTTCAAAGAGGCGGGGATCGAT 1035
||.||...|||||..|||||||..|.||||||||.|||||.||.||.|||
BPUM_3394___y 986 TGACGAAATATTTCAAGCTGACCGCCTTGTTCAAGGAGGCAGGCATTGAT 1035
BSNT_05752___ 1036 CC-GAGCTATTATTTGGTCGTTGATTCTTCATCAGATCTGCCATACGATT 1084
|| || |||||||||.|||||.||.|||||.||.||..||||||||||.|
BPUM_3394___y 1036 CCTGA-CTATTATTTAGTCGTCGACTCTTCCTCTGACTTGCCATACGACT 1084
BSNT_05752___ 1085 TTTACCGACCAGGAGAGGAAGAGGAGCGTCTGCCGATCCATCTCTTGACG 1134
|.|||.|||||||.||||||||.|||.|.|||||.|||||.||.||||||
BPUM_3394___y 1085 TCTACAGACCAGGTGAGGAAGAAGAGAGGCTGCCAATCCACCTTTTGACG 1134
BSNT_05752___ 1135 CAAAACGGCCAAATTAAAGAGCTGTCCAGACAGTCGGCTATTGTGGAATC 1184
||||..||.||.||||||||||||||.||||||||.|.||||||.||..|
BPUM_3394___y 1135 CAAAGTGGTCACATTAAAGAGCTGTCGAGACAGTCAGATATTGTTGATGC 1184
BSNT_05752___ 1185 CATCTCAGGTAAACGGCGGACGGACCACAAGCTGTACTATCCAAAGGACT 1234
|||.||.||||||||..|.||.||.||.||.||.||.|..||.|.|||||
BPUM_3394___y 1185 CATTTCCGGTAAACGAAGAACCGATCATAAACTTTATTTCCCGATGGACT 1234
BSNT_05752___ 1235 TGATT-----TGTGACGGCACTAAACATCCGGAAGC----GAAAATGAA- 1274
|.||| |.||.||| ||| |||| ||||| |||
BPUM_3394___y 1235 TAATTGTAGATATGTCGG----AAA-------AAGCTGAAGAAAA-GAAG 1272
BSNT_05752___ 1275 --AATCCGGCAGCTGCTGGGACTGACATAG 1302
.|||..|.|||||||.|||.||..|||.
BPUM_3394___y 1273 GCGATCATGAAGCTGCTTGGATTGGGATAA 1302
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