Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05736 and BPUM_3388
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:18
# Commandline: needle
# -asequence dna-align/BSNT_05736___ywhE.1.24716.seq
# -bsequence dna-align/BPUM_3388___ywhE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05736___ywhE-BPUM_3388___ywhE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05736___ywhE-BPUM_3388___ywhE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05736___ywhE
# 2: BPUM_3388___ywhE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2189
# Identity: 1430/2189 (65.3%)
# Similarity: 1430/2189 (65.3%)
# Gaps: 232/2189 (10.6%)
# Score: 4251.5
#
#
#=======================================
BSNT_05736___ 1 GTGGATGCA---ATGACAAATAAA-----CGGCTGAGACTGACGCTGAAA 42
.||||..|| ||||..|||||| |.|| .||||..|||||
BPUM_3388___y 1 ATGGACACAATCATGAGTAATAAAAAAATCCGC-----ATGACCGTGAAA 45
BSNT_05736___ 43 ACCGTTCGCGCCTTTATCTTTTTAGG------GGCTTTTGCGGCC---TT 83
||..||||.||||.|.|.|||.|||| .|||||| | ||
BPUM_3388___y 46 ACGATTCGAGCCTGTTTTTTTATAGGCTTGCTCGCTTTT-----CTATTT 90
BSNT_05736___ 84 GGCGGCAGCTGCCGTGTTTATGACTGTCATTTTGATAGCCAAATACCAGG 133
|..|||| |.||.|||.||||..|..||||.||.|||||||..||.|
BPUM_3388___y 91 GCAGGCA----CTGTTTTTTTGACGATTCTTTTAATCGCCAAATGGCAAG 136
BSNT_05736___ 134 GCGCTCCCTCGGTGCAAGTGCCGCAATCCACGATTTTGTATGCGAG-TGA 182
||||.||.||.||.|||||.||.|||||.||||...|.||||| || .||
BPUM_3388___y 137 GCGCCCCTTCTGTTCAAGTTCCCCAATCTACGACGATTTATGC-AGCCGA 185
BSNT_05736___ 183 CGGCTCAAAGCTCGGGGAAACGAACTACGGCGAAAAGCGCTATTGGGTCC 232
.||.||||||||.||.|||.|.|.||..||.||||||.|.||||||||.|
BPUM_3388___y 186 TGGTTCAAAGCTTGGAGAATCTAGCTTTGGAGAAAAGAGATATTGGGTGC 235
BSNT_05736___ 233 CCTTAAAGGACATGAATCCGACGATCGTA-----AAAGCGACAGTGGCGA 277
|.||||||||||||..||| ||.|| .|.||..|.|||||..
BPUM_3388___y 236 CGTTAAAGGACATGTCTCC-----TCATATCAGGCAGGCAGCTGTGGCTG 280
BSNT_05736___ 278 TTGAAGACCAGAATTTCTACGATCATCACGGCTTTGATTATAAACGCATG 327
||||||||.|.|..||.||.||.|||||.|||||||||...|||||.|||
BPUM_3388___y 281 TTGAAGACAAAACCTTTTATGAGCATCATGGCTTTGATGTGAAACGAATG 330
BSNT_05736___ 328 GCCGGCGCGGCGCTTGCTGACCTGAAAGCATTTGCCAAGGTTCAGGGTGC 377
||.||.||.||..|.|||||..|....||..|.||.||.||.||.||.||
BPUM_3388___y 331 GCAGGAGCTGCAGTGGCTGATATTCGCGCCATGGCTAAAGTACAAGGAGC 380
BSNT_05736___ 378 AAGCACCATCACCCAGCAATATGCCAGAAATTTATACCTTGAACACGACA 427
.|||||.|||||||||||||||||..|||||.|.||..|.||.||.||.|
BPUM_3388___y 381 CAGCACGATCACCCAGCAATATGCACGAAATCTGTATTTAGATCATGATA 430
BSNT_05736___ 428 AAACGTGGAAACGGAAATGGAATGAGGCGTTCTACACGATCCGTCTGGAA 477
||||||||||.||||||||||||||.||.||.||||||||.||..|.|||
BPUM_3388___y 431 AAACGTGGAAGCGGAAATGGAATGAAGCCTTTTACACGATTCGCTTAGAA 480
BSNT_05736___ 478 CAAAACTATTCTAAGGACGAGATATTAGAAGGCTATTTAAATACGATTTA 527
|||||||||.|.||.||.|||||.||||||||.||.||.||.||.||.||
BPUM_3388___y 481 CAAAACTATACAAAAGATGAGATTTTAGAAGGATACTTGAACACCATATA 530
BSNT_05736___ 528 CTACGGACACGGCGCCTACGGCATTGAAGCAGCTTCCCGCCTTTATTTCG 577
.||.||.||.||.||.||.|||.|.|||||.||.|||||.||.|||||||
BPUM_3388___y 531 TTATGGTCATGGAGCTTATGGCGTGGAAGCGGCATCCCGTCTGTATTTCG 580
BSNT_05736___ 578 GCAAGCATGCCAAAAACCTGACGGATGCGGAGGCGGCGCTT--TTGGCAG 625
|.||..|.||.||.||..||||....||.||..|.|| ||| || ||.|
BPUM_3388___y 581 GAAAAAAAGCGAAGAATTTGACCCTCGCTGAATCTGC-CTTACTT-GCCG 628
BSNT_05736___ 626 GAATCCCGAAAGGCCCTTCCGGCTATTCACCGTATGTCAATG-AGACGAA 674
|.|||||.||.||||||||...|||.||.||.|||||.|||| ||| |||
BPUM_3388___y 629 GTATCCCAAAGGGCCCTTCTCTCTACTCCCCTTATGTGAATGAAGA-GAA 677
BSNT_05736___ 675 AGCCAAGGAGC--GCCAGAAAACGATTGTGCGGATGATGGAAAAGCAACA 722
|||| ||.|| |..||||.|.||||.||.||...|||.||.|| .||.
BPUM_3388___y 678 AGCC--GGTGCAAGAAAGAATATGATTTTGAGGCACATGCAAGAG-GACG 724
BSNT_05736___ 723 G-ATGATCAGCCAAAAGAAAGCGGATGAATTGATC----AAGGAACCTCT 767
| |||||.|...|||||..|||.|.||| |.| ||.|||...||
BPUM_3388___y 725 GCATGATTACGAAAAAGGCAGCCGCTGA----AGCCGCGAAAGAAAAACT 770
BSNT_05736___ 768 TTCCTATCAGCCTTTGAATAA---------ACAAGTTTCCAAGAGAAAGG 808
.|||||||..||||||.|.|| ||||| ||| ||.|| |
BPUM_3388___y 771 GTCCTATCGTCCTTTGCAAAAGAAGCAGCTACAAG----CAA-AGCAA-G 814
BSNT_05736___ 809 CTCCTTATTTCTACGACAATGCGATGAGAGAGCTGGAGAAAAAGCTCGGC 858
|.||.|||||.||.||..|||.|.|..|.|||.||.||.|||...|.||.
BPUM_3388___y 815 CACCGTATTTTTATGATGATGTGGTTCGTGAGTTGAAGCAAACCTTGGGG 864
BSNT_05736___ 859 ATGACACGGGAGCAAATTGAAACGAGCGGGTT--------AAACGTCTAT 900
.|.||...|||.||.||.|||||....||..| |||||.||.|
BPUM_3388___y 865 CTAACTGAGGAACAGATCGAAACCTATGGCCTTCATATCCAAACGACTTT 914
BSNT_05736___ 901 ACAACGGTAGATAAACGGA--TGCAGCGCATCGCCGAGGAGACCATTA-- 946
|||.| |||| |.|||...||.||.|||.||| |.|||
BPUM_3388___y 915 ACATC----------CGGAATTACAGAAAATTGCTGAGAAGA-CGTTAAA 953
BSNT_05736___ 947 ---CCGAAACGGTTAACGCGGGCTCTGACATTCAAGTCGGGTTTTCAGCC 993
|..||.||.|| ||...||.|||||.||||||||.|||.|.||.
BPUM_3388___y 954 AAGCACAATCGATT----CGAAATCAGACATCCAAGTCGGCTTTACTGCT 999
BSNT_05736___ 994 ATTGATCCCCGCACCGGAAACGTTCTCGCCCTTGTCGGCGGCAGGGATTA 1043
||..||||||..||.||..|.||.||||||||..||||.||.||.|||||
BPUM_3388___y 1000 ATCCATCCCCAAACAGGTCATGTACTCGCCCTCATCGGAGGAAGAGATTA 1049
BSNT_05736___ 1044 TCAAAAAAGCCCGTTTGACCGGACGACACAGGCGAAGCGCCAGCCTGCTT 1093
..|||||||.||.||..|||||...|||||.|||||..|.|||||.|.||
BPUM_3388___y 1050 CGAAAAAAGTCCATTCAACCGGGTCACACAAGCGAAAAGACAGCCCGGTT 1099
BSNT_05736___ 1094 CGACGATCAAGCCATTGCTGTACTATAAAGCGATTCAGAGTGGATTTACG 1143
|.||.||.||||||.|.||.||.||.|..||..|.||.|.|||.|||||.
BPUM_3388___y 1100 CAACAATGAAGCCACTTCTCTATTACATGGCCTTACAAAATGGGTTTACA 1149
BSNT_05736___ 1144 CCAGTCACTTTGATGAAAAGCGAAGAAACCGAGTTTCAAATTGATG--CA 1191
||||..||..|.|||...||.||||||||.|..|||.|..|.|||| ||
BPUM_3388___y 1150 CCAGCAACCGTCATGCGTAGTGAAGAAACAGTTTTTGAGCTCGATGATCA 1199
BSNT_05736___ 1192 AAG----GGAGAAACCTATTCTCCAAGCAACTATAACGGATACTACGCCA 1237
|.| ||.|...|.|||||.||||||||.|||.|.||.||.|||||||
BPUM_3388___y 1200 AGGAAGCGGTGCTGCTTATTCGCCAAGCAATTATCATGGCTATTACGCCA 1249
BSNT_05736___ 1238 ACAAGCCG--ATTACGCTTCTGCAGGCGCTGGCGCTTTCCGACAATATTT 1285
|.|.|| ||||||.|.||.||.||..|||||||.||.||.|||||||
BPUM_3388___y 1250 --ATGACGGCATTACGATGCTTCAAGCCTTGGCGCTGTCTGATAATATTT 1297
BSNT_05736___ 1286 ACGCTGTGAAAACGCATCTTTTTCTCGGCACGAACAAACTTGTA-AAGAC 1334
|||||||||||||.|||||.|||.|.||.|.|.|..|.|||||| ..|.|
BPUM_3388___y 1298 ACGCTGTGAAAACCCATCTATTTTTAGGAATGGAGCAGCTTGTACGTGCC 1347
BSNT_05736___ 1335 GGCAAAGGA-ATTCGGCATTACCGCCCATCT---TCAAGCACTGCCGTCC 1380
||.||| | |||.|||||.|.||...|.|| ||||| ||||.||.
BPUM_3388___y 1348 GGGAAA--ACATTTGGCATCAACGAAAAACTAGATCAAG---TGCCATCA 1392
BSNT_05736___ 1381 CTGGCACTCGGCACCGAACCC-GTGCGTCCGATTGAGATGGTCAACGCCT 1429
||.||..|.|||| ||..||| ||....||.|||||.|||...||.||.|
BPUM_3388___y 1393 CTAGCCTTAGGCA-CGTCCCCTGTCAAACCAATTGAAATGACAAATGCTT 1441
BSNT_05736___ 1430 ATGCCATGCTCGCAAATGGCGGAAAGAAAATCGAACCGACTTTTATTTCA 1479
||||||||||.|..|||||||||||...|.||.||||.||.||||||.||
BPUM_3388___y 1442 ATGCCATGCTTGTCAATGGCGGAAAACGAGTCAAACCCACCTTTATTACA 1491
BSNT_05736___ 1480 AGGGTAACGGACGCAGCCGGCCACGTGCTGT---ACGAAAACCCGAATC- 1525
|..||||||||.|||...|||.||||.||.| |.|||||.|..||.|
BPUM_3388___y 1492 AAAGTAACGGATGCAAAAGGCAACGTACTTTTTGAAGAAAAACAAAAACG 1541
BSNT_05736___ 1526 AGCATAAACAGGTGCTT-GATGAAAAAGCCGCTTTTGTCA-CAGCGAGTA 1573
|| |.||.|| ||| |||||||||||.||.||||||| ||.||| .|
BPUM_3388___y 1542 AG----AGCAAGT-CTTAGATGAAAAAGCAGCCTTTGTCACCACCGA-CA 1585
BSNT_05736___ 1574 TGATGACAGGCATGTT---TGATACCGATTTAAATGGATATACGTCGGTT 1620
|||||.||||.||||| |||| .|.|||||.||.||||||...||.
BPUM_3388___y 1586 TGATGTCAGGAATGTTCAATGAT---CAGTTAAACGGCTATACGAGTGTC 1632
BSNT_05736___ 1621 ACGGG----------ACGAACGATAGCCAACCGCCTGACAAGAACGTATG 1660
||.|| |.|||.||| ||.||..||||.||.|
BPUM_3388___y 1633 ACTGGTCGCACCATTATGAAGGAT----------CTCACGCGAACATACG 1672
BSNT_05736___ 1661 CCGGAAAATCAGGAACCACCAGCGCAGACAGCTGGATGATCGGCTTCAAT 1710
..|||||||||||.||.||..|.||.|||||||||||||||||||||..|
BPUM_3388___y 1673 GAGGAAAATCAGGGACGACAGGAGCCGACAGCTGGATGATCGGCTTCTCT 1722
BSNT_05736___ 1711 CCGAAACTGGCCGCAGGTGTTTGGACCGGCTATGACAAAAACAGCACCAT 1760
||..|.||.|...|||||||.|||||.||||||||.|||....|.|||||
BPUM_3388___y 1723 CCCCAGCTCGTGACAGGTGTGTGGACAGGCTATGATAAAGGGCGAACCAT 1772
BSNT_05736___ 1761 CGACTCGGTCGAAGAAAAAAGCTATGCTAAAACCATTTGGGCGGACTTCA 1810
.||||||||||||||||.|..||||||.||||..||.|||||....||.|
BPUM_3388___y 1773 TGACTCGGTCGAAGAAACAGCCTATGCAAAAAAGATCTGGGCATCTTTTA 1822
BSNT_05736___ 1811 TGGAGAAC-GCGCTC----AAGGGCGATCCGGAAACCGCGTTCAAGCCGC 1855
|||| |.| ||.||| || .|.||.|...||.|.||||.|||.|
BPUM_3388___y 1823 TGGA-ATCAGCCCTCTCTAAA----CAGCCAGCGTCCTCCTTCATGCCAC 1867
BSNT_05736___ 1856 CAAAAGGCGTAACCGGTGTGTACATTGATCCGGAAACAGGCTACTCAT-- 1903
||.|.|||||||..||||||||.||..||||..||||.|||.| || |
BPUM_3388___y 1868 CAGACGGCGTAAAAGGTGTGTATATCAATCCAAAAACCGGCGA-TC-TGG 1915
BSNT_05736___ 1904 CAGGTCCCGGCTGTGCCGCTAA-GCATTACACATATTTTGTGAAAGGGAC 1952
||||.||.||.||||...|.|| |.||| .||.||||||.|..||||.||
BPUM_3388___y 1916 CAGGCCCAGGATGTGAATCAAAGGTATT-TACCTATTTTATAGAAGGAAC 1964
BSNT_05736___ 1953 AGAACCCGCAAACGTGTGCTACGGGGCAGAACCCGCAAAACAAACAAAAG 2002
.||.|||.||...|||||||||||.||.|| .||.|||
BPUM_3388___y 1965 GGAGCCCACAGGTGTGTGCTACGGCGCTGA-----------GAATAAA-- 2001
BSNT_05736___ 2003 ACCGGCTTC-------CATCCA----AAG---AAAAGCCTGCTTCCGAGA 2038
.|||| |||||| ||| ||||||| |
BPUM_3388___y 2002 ----TCTTCTGAGAATCATCCAGTTCAAGATCAAAAGCC----------A 2037
BSNT_05736___ 2039 AA-AAGTGGTGGGACAAATGGCTGGGGCGACATCATTGA 2076
|| ||.||||||||.||.|||||| .|.|.||.|
BPUM_3388___y 2038 AAGAAATGGTGGGAAAAGTGGCTG------AAACGTTAA 2070
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