Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05688 and BPUM_3379
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:17
# Commandline: needle
# -asequence dna-align/BSNT_05688.1.24716.seq
# -bsequence dna-align/BPUM_3379___ywjA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05688-BPUM_3379___ywjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05688-BPUM_3379___ywjA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05688
# 2: BPUM_3379___ywjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1779
# Identity: 1068/1779 (60.0%)
# Similarity: 1068/1779 (60.0%)
# Gaps: 351/1779 (19.7%)
# Score: 3479.5
#
#
#=======================================
BSNT_05688 0 -------------------------------------------------- 0
BPUM_3379___y 1 ATGCTAAAACGCTTTTTCGCCTATTACAGGCCCTATCGAGGTCTGTTCTT 50
BSNT_05688 0 -------------------------------------------------- 0
BPUM_3379___y 51 TTTAGATTTCTTTTGCGCTGTTGCCGTTGGATTGATGGAACTAGGTTTCC 100
BSNT_05688 0 -------------------------------------------------- 0
BPUM_3379___y 101 CTCTTATTGTGAACTACTTCATTGATACATTGTTACCAACAGGGAACTGG 150
BSNT_05688 0 -------------------------------------------------- 0
BPUM_3379___y 151 ACAATTATTGTCTGGACGGCACTTGCCCTGTTTGTCATTTATGCCCTCAG 200
BSNT_05688 1 -------------------------------------ATGCTTGGTATCA 13
||||||||.||.|
BPUM_3379___y 201 CTCGGTTATGCAATTTATTGTGTCGTATTGGGGGCATATGCTTGGCATTA 250
BSNT_05688 14 ATATTGAGACTGATATGAGAAAGTCGCTTTTTGACCATTTGCAAAAGCTC 63
|||||||.||.||||||||.||...|||.|||||.||.||.||....||.
BPUM_3379___y 251 ATATTGAAACAGATATGAGGAAAAAGCTGTTTGATCACTTTCAGCGCCTA 300
BSNT_05688 64 TCGTTCAAATTTTACGACAACAACAAGACGGGAACGCTGATGTCGAAGC- 112
||.||.|||||.|..||||||||.||.||.||.|.|||.||||| |.||
BPUM_3379___y 301 TCCTTTAAATTCTTTGACAACAATAAAACAGGTAAGCTCATGTC-ACGCA 349
BSNT_05688 113 TCACGAACGATTTAATGTATATCGGTGAAGTCGCCCATCACGGTCCGGAA 162
|.||.||||||.|.|||||.||.||.|||||.||.|||||.|||||.|||
BPUM_3379___y 350 TGACAAACGATCTCATGTACATTGGAGAAGTGGCGCATCATGGTCCTGAA 399
BSNT_05688 163 GACTTATTCATTGCGGTCATGACCATTCTAGGGGCGTTCGGAGTGATGCT 212
||.||.||.||.||..|.|||||.|||||.||.||.||.|.|||.|||||
BPUM_3379___y 400 GATTTGTTTATAGCCATTATGACGATTCTTGGTGCCTTTGCAGTCATGCT 449
BSNT_05688 213 GTTTATTAACTGGCAGCTTGCTTTATTAACGTTTATCATTATGCCGATCG 262
|.|.|||||.||||||.|.||..|.||||||||..||||.|||||..||.
BPUM_3379___y 450 GATGATTAATTGGCAGTTGGCCATTTTAACGTTCCTCATCATGCCTGTCA 499
BSNT_05688 263 TCATTTGGCTAGCGCTTTATTTCAACAAAAAAATGACCAAAGCATTTACC 312
||||||||||.||.|||.||||.||.|||||.|||||.||.||..||| |
BPUM_3379___y 500 TCATTTGGCTCGCCCTTCATTTTAATAAAAAGATGACAAAGGCGATTA-C 548
BSNT_05688 313 AC-GCTGAACAAGGATATCGGAGAC-TTCAGCGCGCGTGTAGAAAATAAC 360
|| |||.|||||.||.||.|||||| |||| .||..|.||.|||||.||.
BPUM_3379___y 549 ACAGCTCAACAATGACATTGGAGACTTTCA-TGCAAGAGTTGAAAACAAT 597
BSNT_05688 361 ATCGGCGGCATCCGGCTTGTGCAGGCGTTCGGAAATGAAGCATTT---GA 407
|||||.|||||.||.|||||.||.||.||.|..||.||| ||||| ||
BPUM_3379___y 598 ATCGGAGGCATTCGTCTTGTTCAAGCCTTTGCTAACGAA-CATTTCGAGA 646
BSNT_05688 408 AAAAGAACGCTTCGCCGTCAACAACCAGCGTTTCCGTGCAA-CAAAGCTT 456
||||| ||.||.||.|..||||||.|.|||||.|| |.|| |.||||||
BPUM_3379___y 647 AAAAG--CGTTTTGCTGAAAACAACAACCGTTTTCG-GAAAGCGAAGCTT 693
BSNT_05688 457 TCTTCCTACAAAATCATGGCGAAAAACGGGTCAATCAGCTATATGCTGAC 506
..||||||.|||||.|||.||...|||||.||||||||||||||.|||||
BPUM_3379___y 694 CTTTCCTATAAAATTATGTCGGTCAACGGATCAATCAGCTATATTCTGAC 743
BSNT_05688 507 ACGGTTTGTCACGCTGTTTGTTCTTTTGTGC-GGGACGTGGTTTGTCATT 555
|||..||||.||.||||||||.|||.| .|| ||.||.|||||||||.|.
BPUM_3379___y 744 ACGTCTTGTGACACTGTTTGTCCTTCT-CGCAGGTACATGGTTTGTCCTG 792
BSNT_05688 556 CGCGGCTC-CTTATCGTACGGGGAATTTGTGGCGTTTGTGCTCCTGACGA 604
|..|| || .|||.||...||.|..|||.|.||.|||||.||..|.||||
BPUM_3379___y 793 CAAGG-TCAATTAACGGCAGGTGGCTTTATCGCATTTGTTCTGATTACGA 841
BSNT_05688 605 ATGTGCTGTTCAGGCCTATTGACAAAATTAATGCCATTATCGAAATGTAT 654
||||..|.||.||.||.|||||.|||||.||..|..|.||.|||||||||
BPUM_3379___y 842 ATGTTTTATTTAGACCGATTGATAAAATCAACACGGTCATTGAAATGTAT 891
BSNT_05688 655 CCGAGGGGGATCGCCGGTTTCAAAAGCTATATGGAGCTCATGGAGACAGA 704
||.|..||.||.||.||.||.|||||||||.|.||..|..|.||.|||||
BPUM_3379___y 892 CCAAAAGGCATTGCGGGCTTTAAAAGCTATGTTGATTTGCTAGAAACAGA 941
BSNT_05688 705 GCCGGACATTCAGGATTCACCTGATGCGA----GAGATGTTTCCGGCCTG 750
.|||||..|..|||||.|| || |.|| |.|||||.|.|||..||
BPUM_3379___y 942 ACCGGATGTGAAGGATACA---GA-GGGAGCACGTGATGTATACGGATTG 987
BSNT_05688 751 AAGGG-------CAATATCCGCTATAAACATGTTTCGTTTGGCTATGATG 793
||.|| .|||||| .|||| ||..|.||||||||.||||
BPUM_3379___y 988 AAAGGTGAAATTGAATATC-----GAAAC--GTAACATTTGGCTACGATG 1030
BSNT_05688 794 GCCATCACA---ATGTCCTCAATGACATCAACCTATCCAT-------TCA 833
|.|||| ||||..|.||..| ||||.|| |||
BPUM_3379___y 1031 ---AACACAGTCATGTGTTAAAGAA--------TATCGATTTGAAGATCA 1069
BSNT_05688 834 AGC-GGGGGAAACGGTGGCGTTCGTCGGTCCGTCAGGTGCGGGGAAATCA 882
|.| .||.||||||||.|||||.|||||.||.|||||.||.||.||||||
BPUM_3379___y 1070 AACAAGGAGAAACGGTTGCGTTTGTCGGACCTTCAGGAGCAGGAAAATCA 1119
BSNT_05688 883 ACGCTTTGCAGTCTGCTTCCGCGTTTTTATGA--AGCATCGGAGGGCGAC 930
|||.|||||||.|||||.||.||||||||||| .|.|| ||.||.||.
BPUM_3379___y 1120 ACGATTTGCAGCCTGCTGCCTCGTTTTTATGATTTGGAT--GAAGGGGAG 1167
BSNT_05688 931 ATTACGATTGACGGCATCAGTATAAAAGACATGACGCTTTCTTCGTTGCG 980
||.||.||.|||||.||.||||.||||...||||||.|.|||||.||..|
BPUM_3379___y 1168 ATCACAATAGACGGTATAAGTACAAAATCGATGACGTTGTCTTCTTTAAG 1217
BSNT_05688 981 CGGGCAGATTGGCGTTGTGCAGCAGGACGTTTTCTTATTCTCGGGCACGC 1030
...|||||||||..|||||||||||||.||.||.||||||||.|||||..
BPUM_3379___y 1218 GCAGCAGATTGGTATTGTGCAGCAGGATGTCTTTTTATTCTCAGGCACCA 1267
BSNT_05688 1031 TTAGAGAAAATATCGCCTACGGCCGACTAGGCGCATCA--GAAGAAGACA 1078
||.|.|||||.||.||.||||||...||||..|| || ||.|.|||..
BPUM_3379___y 1268 TTCGTGAAAACATTGCGTACGGCAATCTAGAAGC--CAGCGATGCAGAGG 1315
BSNT_05688 1079 TTTGGCAAGCTGTGAAG-CAGGCGCATCTGGAAGAGCTCGTCCA----TA 1123
|.|||.|.||||| |.| |..||||||.|.||.||.||.||||| |
BPUM_3379___y 1316 TGTGGGAGGCTGT-ACGTCGTGCGCATTTAGAGGAACTTGTCCAGCGTT- 1363
BSNT_05688 1124 ACATGCCCGATGGGTTGGATACTATGATTGGCGAACGTGGCGTGAAGCTT 1173
|.||.||.||||||.||||..||||.||.||.||.|||||.|||||.
BPUM_3379___y 1364 ---TCCCAGAAGGGTTGAATACGGTGATAGGTGAGCGCGGCGTCAAGCTA 1410
BSNT_05688 1174 TCCGGCGGGCAAAAACAGCGTCTGTCAATTGCAAGGATGTTCTTGAAAAA 1223
||.|||||.|||||.|||||..||||.|||||..|||||||..|||||||
BPUM_3379___y 1411 TCAGGCGGCCAAAAGCAGCGCTTGTCCATTGCGCGGATGTTTCTGAAAAA 1460
BSNT_05688 1224 TCCGTCGATCTTGATTCTCGACGAAGCCACCTCAGCCCTTGATACAGAGA 1273
.||.||.||..|.||.||.||.||||||||.|||||.||.||||||||.|
BPUM_3379___y 1461 CCCATCTATACTCATCCTAGATGAAGCCACATCAGCACTGGATACAGAAA 1510
BSNT_05688 1274 CGGAAGCGGCGATCCAAAAGGCGCTTCAAGAGT--------TGTCTGAGG 1315
|.|||...||.|||||..|.||||| |||| .|||
BPUM_3379___y 1511 CAGAAAAAGCCATCCAGGACGCGCT----GAGTGAACTAGCCGTC----- 1551
BSNT_05688 1316 GGC-GCACGACGCTTGTCATCGCCCACAGGCTGGCGACGATCAAAGACGC 1364
||| |.||.||.||.||||||||||||.|.||.||.||.||.|||.||||
BPUM_3379___y 1552 GGCAGGACAACACTCGTCATCGCCCACCGCCTAGCAACAATTAAACACGC 1601
BSNT_05688 1365 GGACAGAATTGTAGTTGTCACAAACAACGGTATTGAAGAACAAGGCCGTC 1414
.|||.|.||..|.||.||.|||.|..|.||.||||||||.||||||||.|
BPUM_3379___y 1602 CGACCGTATCATCGTCGTGACAGAGGAAGGCATTGAAGAGCAAGGCCGCC 1651
BSNT_05688 1415 ATCAAGACCTGATCGAAGCCGGAGGCCTATACAGCAGGCTGCATCAAGTG 1464
|.|||||..|.||..||...||.|||.||||||||||.|||||..|||.|
BPUM_3379___y 1652 ACCAAGATTTAATTCAAATGGGTGGCGTATACAGCAGACTGCACGAAGCG 1701
BSNT_05688 1465 CAATTCGGGCA--AATTGTGCAGCGATAG 1491
||.||.||.|| ||
BPUM_3379___y 1702 CAGTTTGGTCATTAA-------------- 1716
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