Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05685 and BPUM_3377

See Amino acid alignment / Visit BSNT_05685 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:17
# Commandline: needle
#    -asequence dna-align/BSNT_05685.1.24716.seq
#    -bsequence dna-align/BPUM_3377___ywjC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05685-BPUM_3377___ywjC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05685-BPUM_3377___ywjC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05685
# 2: BPUM_3377___ywjC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 280
# Identity:     130/280 (46.4%)
# Similarity:   130/280 (46.4%)
# Gaps:         104/280 (37.1%)
# Score: 366.5
# 
#
#=======================================

BSNT_05685         0 --------------------------------------------------      0
                                                                       
BPUM_3377___y      1 ATGTCTCAGATCTATTCAATCCAAATCGCTGCGAAAGCATTAAATTTACA     50

BSNT_05685         1 -------ATGTGCCATTCCGGAA---GCCACGAGG------------TTT     28
                            ||.|..|.||..|.||   |||||.|||            |.|
BPUM_3377___y     51 TAAGCTTATTTCTCTTTATGAAAAATGCCACCAGGCTCAACATCGTCTAT    100

BSNT_05685        29 ATATTTATTCAAAGAAAACGATGTGCAAAATCAAAAGCTTAATTGAGCTT     78
                     ||.|.|||||.||||||||.|||||.||.|||||||...|..|.||||||
BPUM_3377___y    101 ATGTATATTCTAAGAAAACAATGTGTAACATCAAAAATATCGTAGAGCTT    150

BSNT_05685        79 GAAACATTCCGCATGGCTCA-TAAT---GAAAAGGAATATTTGATCGTAG    124
                     |||||||||    .|||||| |.||   |||...||.||.||.||.||.|
BPUM_3377___y    151 GAAACATTC----AGGCTCACTCATTTAGAATCTGACTACTTAATTGTCG    196

BSNT_05685       125 TTGAAGGAACAAAAGCATCACAGCTCATTGAAAAATTCCAAAATCTCATC    174
                     |.||.||||.|||||||                     |||.|.|||.|.
BPUM_3377___y    197 TAGAGGGAAAAAAAGCA---------------------CAAGACCTCTTG    225

BSNT_05685       175 GAGCCTGCTG--AGAGAGAAGCGCTC-TAA    201
                     .||||...||  |.|||||||...|| |||
BPUM_3377___y    226 CAGCCATTTGAAAAAGAGAAGGTTTCATAA    255


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