Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03598 and BPUM_3373
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:08
# Commandline: needle
# -asequence dna-align/BSNT_03598___mmgA.1.24716.seq
# -bsequence dna-align/BPUM_3373___mmgA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03598___mmgA-BPUM_3373___mmgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03598___mmgA-BPUM_3373___mmgA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03598___mmgA
# 2: BPUM_3373___mmgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1301
# Identity: 765/1301 (58.8%)
# Similarity: 765/1301 (58.8%)
# Gaps: 244/1301 (18.8%)
# Score: 1917.5
#
#
#=======================================
BSNT_03598___ 1 ATGAGGAAAACAGTCATTGTAAGTGCTGCAAGAACGCCATTTGGCAAATT 50
|||||.||.||.|||||||||..||..||||||||.||||||||.|||.|
BPUM_3373___m 1 ATGAGCAAGACGGTCATTGTATCTGGAGCAAGAACACCATTTGGAAAACT 50
BSNT_03598___ 51 CGGCGGAGTATTGAAAGAGGTGAAAGCTGCTGAGCTTGGGGGCATGGTGA 100
.|||||.|..||.|..|.|.|||..||.||.||.||.||.||..|||..|
BPUM_3373___m 51 AGGCGGTGCTTTCATCGGGTTGACTGCCGCAGAACTAGGCGGAGTGGCAA 100
BSNT_03598___ 101 TGAAGGAGGCGCTGCAACGGGCTGGAGTCTCTGG---AGATGATGTAGA- 146
|.||||..||||||.|| .||||..|.|| |.||.||||.||
BPUM_3373___m 101 TCAAGGCTGCGCTGGAA------AGAGTGCCAGGTTCACATCATGTGGAT 144
BSNT_03598___ 147 -AGGAAACGTCATGGGCATGGTTGTCCAGGCCGGCTCAGGGCAGATACCT 195
||| .|.|||||||.|..|||.|.||||..||...|||.|||||.|||
BPUM_3373___m 145 GAGG--TCATCATGGGAAGTGTTTTGCAGGGAGGACAAGGACAGATTCCT 192
BSNT_03598___ 196 TCCCGTCAAGCTGCCCGTCTGGCGGGAATGCCTTGGAGTGTGCCGTCAGA 245
||..|.|||||.||..|.|..||.|...|.||.|||...||.|||.|..|
BPUM_3373___m 193 TCAAGGCAAGCAGCAAGACATGCTGATCTTCCGTGGTCCGTTCCGACGCA 242
BSNT_03598___ 246 AACACTGAATAAAGTCTGTGCTTCCGGCCTTCGCGCTGT---CACTTTAT 292
|||..|.||||||||||||||.||.||..|.|||..||| ||| |.
BPUM_3373___m 243 AACCATCAATAAAGTCTGTGCATCAGGTATGCGCAGTGTGAGCAC---AG 289
BSNT_03598___ 293 GTGATCAAATGATTCGGGC-GCAGGATGCGGA---CATACTTGTTGCGGG 338
..||.|||||.||.||.|| |.| |||||||| |||.| |.|||||
BPUM_3373___m 290 CAGACCAAATCATCCGAGCTGGA-GATGCGGAGGTCATCC---TAGCGGG 335
BSNT_03598___ 339 GGGGATGGAAAGCATGAGCAATATTCCGTATGCCGTTCCCGCC------- 381
.||.||||||..|||| || .|.||||
BPUM_3373___m 336 CGGTATGGAATCCATG--------TC----------ACACGCCCCTTATT 367
BSNT_03598___ 382 -----------GGGCGCTGGGG------AGCACGGATGGGGGACGG---- 410
|.||||||||| | |||||.||.||
BPUM_3373___m 368 TACTAAAAAAAGCGCGCTGGGGCTACAAA------ATGGGAGATGGTGCG 411
BSNT_03598___ 411 ---CGAGCTTAGGGACTTAATGGTGTATGACGGATTAACGTGCGCATTTG 457
|.||.|..| |||.|.|..||.||||||||.||..|||||
BPUM_3373___m 412 GTACAAGATGCG-------ATGATTTTAGATGGATTAACCTGTTCATTT- 453
BSNT_03598___ 458 ACGAG--GTGCACATGGCTGTTCACGGAAATA------CA--GCTGCCAA 497
|| || ||.||.|||| ||.|.|| || |||||.||
BPUM_3373___m 454 AC-AGGCGTCCATATGG--------GGGAGTATGGGAGCATGGCTGCGAA 494
BSNT_03598___ 498 GGAATATGCAAT--CTCACGAAGAGAGCAGGACGAATGGGCGTTGAGAAG 545
||||..||.||| |.|.||| ||||||.|||...||||||||.|||||
BPUM_3373___m 495 GGAACTTGGAATTACGCGCGA--AGAGCAAGACCTTTGGGCGTTAAGAAG 542
BSNT_03598___ 546 TCATGCAAGGGC-AGCTAAGGCCGCCGATGAA-GGGAAGTTTCAGGATGA 593
|||||.|.|||| |.|.||| |||.||..|| ||....|||.|..||||
BPUM_3373___m 543 TCATGAACGGGCGATCGAAG--CGCAGAAAAACGGCTTTTTTGAACATGA 590
BSNT_03598___ 594 AATTGTTCCCGTCAACTGGATCGGTCGAAAAGGAAAAC---CAAACGTTG 640
|||....||||||| |.||| ||.|.|||||| ..|.|| |
BPUM_3373___m 591 AATCACCCCCGTCA-------CCGTC-AAGACGAAAACGGGAGAGCG--G 630
BSNT_03598___ 641 TTGAT----AAAGATGAAGCGATTCGCCGTGACAC---------AAGTCT 677
.|||| .||||||||.|....||.|||||.|| |.|.||
BPUM_3373___m 631 CTGATCACAGAAGATGAATCCCCGCGGCGTGATACGTCATATGAACGACT 680
BSNT_03598___ 678 GGATC--AGCTCGCGAAACTTGCTCCGATTTATGCAAGTGAC-GGTTCTA 724
| || ||||| |..|.||.| ||||..||| || |||.|.|
BPUM_3373___m 681 G--TCAAAGCTC---ATGCCTGTT----TTTAATCAA---ACGGGTACCA 718
BSNT_03598___ 725 TCACAGCCGGCAATGCTCCTGGAGTCAATGACGGAGCCGGCGCGTTCGTG 774
|.||.||.||.|||||.||.||..|||||||.||.||..|.|||.|..|.
BPUM_3373___m 719 TTACCGCTGGAAATGCACCAGGTATCAATGATGGCGCAAGTGCGCTACTT 768
BSNT_03598___ 775 CTGATG---------TCTGAGGAAAAAGCTGC-TGAGCTTGGCAAACGGC 814
.|.||| |.|| .|||||.|| ||| ||.||| ||
BPUM_3373___m 769 TTAATGAAAGACACATATG----CAAAGCAGCATGA---TGTCAA---GC 808
BSNT_03598___ 815 CTCTGGCTACAATTCTTGGTTTTTCAACTACGGGAATGCCAGCGCACGAG 864
|..|||| |.||.||.||..|||..|.|.| || ||| ||
BPUM_3373___m 809 CATTGGC----AGTCGTGCTTGGTCATGTGCAG--AT---AGC---CG-- 844
BSNT_03598___ 865 CTGGCGGCAGCGCCGGGGTTTGCCATTAACA--AGC--------TCCTGA 904
|.|.|||| ..||.|||.|||..|||| ||| ||..||
BPUM_3373___m 845 -TAGAGGCA----AAGGATTTTCCAAAAACACCAGCCTTTGCTATCGAGA 889
BSNT_03598___ 905 A------AAAGAACGGTTTAACTGTCCAA----------GATATTGACTT 938
| |.|||| |||.| .||| ||||||||..|
BPUM_3373___m 890 AGATTTTACAGAA------AACAG-GCAAGCGTCTAGAGGATATTGATCT 932
BSNT_03598___ 939 GTTTGAAGTAAATGAAGCTTTTGCTTCAGTTGT---TTTGACATGTGAAA 985
.||||||.|.|||||.||.|| .||||.||| ..||.|.|||||||
BPUM_3373___m 933 ATTTGAAATCAATGAGGCATT---CTCAGCTGTGGCGCTGGCGTGTGAAA 979
BSNT_03598___ 986 AAATCGTAGGTTTCGATC--TTGAAAAAGTAAATGTAAATGGCGGTGCGA 1033
|||||...||..|.||.| ..||||| |.|||.|.|||||.|||||..
BPUM_3373___m 980 AAATCACGGGGCTGGACCGGCGGAAAA--TGAATATCAATGGTGGTGCAG 1027
BSNT_03598___ 1034 TCGCGCTCGGACACCCGATCGGCGCGAGCGGTGCGAGAATTCTCATGACG 1083
|.|||||.||.|||||.||.||.||.|||||..|..|.||..|..||||
BPUM_3373___m 1028 TTGCGCTTGGTCACCCTATTGGGGCAAGCGGAACACGTATCATATTGAC- 1076
BSNT_03598___ 1084 CTTG-TTTATGAATTAAAGCGACGAGGAGGGGGTCTGGGCGTTGCCGCTA 1132
|||| ||.|||.||||||.|.|.||||.||.|||.|.|||.||||.||.|
BPUM_3373___m 1077 CTTGATTCATGCATTAAAACAAAGAGGTGGCGGTATTGGCATTGCGGCGA 1126
BSNT_03598___ 1133 TTTGCAGCGG-GGCAGCACAGGGAGACGCCGTCTTAGTGCAGGTTCATTA 1181
|||||||.|| ||| |..||.|||||.|||.||.|..|..||||..||||
BPUM_3373___m 1127 TTTGCAGTGGAGGC-GGTCAAGGAGATGCCATCATGATAAAGGTAGATTA 1175
BSNT_03598___ 1182 A 1182
|
BPUM_3373___m 1176 A 1176
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