Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03598 and BPUM_3373

See Amino acid alignment / Visit BSNT_03598 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:08
# Commandline: needle
#    -asequence dna-align/BSNT_03598___mmgA.1.24716.seq
#    -bsequence dna-align/BPUM_3373___mmgA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03598___mmgA-BPUM_3373___mmgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03598___mmgA-BPUM_3373___mmgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03598___mmgA
# 2: BPUM_3373___mmgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1301
# Identity:     765/1301 (58.8%)
# Similarity:   765/1301 (58.8%)
# Gaps:         244/1301 (18.8%)
# Score: 1917.5
# 
#
#=======================================

BSNT_03598___      1 ATGAGGAAAACAGTCATTGTAAGTGCTGCAAGAACGCCATTTGGCAAATT     50
                     |||||.||.||.|||||||||..||..||||||||.||||||||.|||.|
BPUM_3373___m      1 ATGAGCAAGACGGTCATTGTATCTGGAGCAAGAACACCATTTGGAAAACT     50

BSNT_03598___     51 CGGCGGAGTATTGAAAGAGGTGAAAGCTGCTGAGCTTGGGGGCATGGTGA    100
                     .|||||.|..||.|..|.|.|||..||.||.||.||.||.||..|||..|
BPUM_3373___m     51 AGGCGGTGCTTTCATCGGGTTGACTGCCGCAGAACTAGGCGGAGTGGCAA    100

BSNT_03598___    101 TGAAGGAGGCGCTGCAACGGGCTGGAGTCTCTGG---AGATGATGTAGA-    146
                     |.||||..||||||.||      .||||..|.||   |.||.||||.|| 
BPUM_3373___m    101 TCAAGGCTGCGCTGGAA------AGAGTGCCAGGTTCACATCATGTGGAT    144

BSNT_03598___    147 -AGGAAACGTCATGGGCATGGTTGTCCAGGCCGGCTCAGGGCAGATACCT    195
                      |||  .|.|||||||.|..|||.|.||||..||...|||.|||||.|||
BPUM_3373___m    145 GAGG--TCATCATGGGAAGTGTTTTGCAGGGAGGACAAGGACAGATTCCT    192

BSNT_03598___    196 TCCCGTCAAGCTGCCCGTCTGGCGGGAATGCCTTGGAGTGTGCCGTCAGA    245
                     ||..|.|||||.||..|.|..||.|...|.||.|||...||.|||.|..|
BPUM_3373___m    193 TCAAGGCAAGCAGCAAGACATGCTGATCTTCCGTGGTCCGTTCCGACGCA    242

BSNT_03598___    246 AACACTGAATAAAGTCTGTGCTTCCGGCCTTCGCGCTGT---CACTTTAT    292
                     |||..|.||||||||||||||.||.||..|.|||..|||   |||   |.
BPUM_3373___m    243 AACCATCAATAAAGTCTGTGCATCAGGTATGCGCAGTGTGAGCAC---AG    289

BSNT_03598___    293 GTGATCAAATGATTCGGGC-GCAGGATGCGGA---CATACTTGTTGCGGG    338
                     ..||.|||||.||.||.|| |.| ||||||||   |||.|   |.|||||
BPUM_3373___m    290 CAGACCAAATCATCCGAGCTGGA-GATGCGGAGGTCATCC---TAGCGGG    335

BSNT_03598___    339 GGGGATGGAAAGCATGAGCAATATTCCGTATGCCGTTCCCGCC-------    381
                     .||.||||||..||||        ||          .|.||||       
BPUM_3373___m    336 CGGTATGGAATCCATG--------TC----------ACACGCCCCTTATT    367

BSNT_03598___    382 -----------GGGCGCTGGGG------AGCACGGATGGGGGACGG----    410
                                |.|||||||||      |      |||||.||.||    
BPUM_3373___m    368 TACTAAAAAAAGCGCGCTGGGGCTACAAA------ATGGGAGATGGTGCG    411

BSNT_03598___    411 ---CGAGCTTAGGGACTTAATGGTGTATGACGGATTAACGTGCGCATTTG    457
                        |.||.|..|       |||.|.|..||.||||||||.||..||||| 
BPUM_3373___m    412 GTACAAGATGCG-------ATGATTTTAGATGGATTAACCTGTTCATTT-    453

BSNT_03598___    458 ACGAG--GTGCACATGGCTGTTCACGGAAATA------CA--GCTGCCAA    497
                     || ||  ||.||.||||        ||.|.||      ||  |||||.||
BPUM_3373___m    454 AC-AGGCGTCCATATGG--------GGGAGTATGGGAGCATGGCTGCGAA    494

BSNT_03598___    498 GGAATATGCAAT--CTCACGAAGAGAGCAGGACGAATGGGCGTTGAGAAG    545
                     ||||..||.|||  |.|.|||  ||||||.|||...||||||||.|||||
BPUM_3373___m    495 GGAACTTGGAATTACGCGCGA--AGAGCAAGACCTTTGGGCGTTAAGAAG    542

BSNT_03598___    546 TCATGCAAGGGC-AGCTAAGGCCGCCGATGAA-GGGAAGTTTCAGGATGA    593
                     |||||.|.|||| |.|.|||  |||.||..|| ||....|||.|..||||
BPUM_3373___m    543 TCATGAACGGGCGATCGAAG--CGCAGAAAAACGGCTTTTTTGAACATGA    590

BSNT_03598___    594 AATTGTTCCCGTCAACTGGATCGGTCGAAAAGGAAAAC---CAAACGTTG    640
                     |||....|||||||       |.||| ||.|.||||||   ..|.||  |
BPUM_3373___m    591 AATCACCCCCGTCA-------CCGTC-AAGACGAAAACGGGAGAGCG--G    630

BSNT_03598___    641 TTGAT----AAAGATGAAGCGATTCGCCGTGACAC---------AAGTCT    677
                     .||||    .||||||||.|....||.|||||.||         |.|.||
BPUM_3373___m    631 CTGATCACAGAAGATGAATCCCCGCGGCGTGATACGTCATATGAACGACT    680

BSNT_03598___    678 GGATC--AGCTCGCGAAACTTGCTCCGATTTATGCAAGTGAC-GGTTCTA    724
                     |  ||  |||||   |..|.||.|    ||||..|||   || |||.|.|
BPUM_3373___m    681 G--TCAAAGCTC---ATGCCTGTT----TTTAATCAA---ACGGGTACCA    718

BSNT_03598___    725 TCACAGCCGGCAATGCTCCTGGAGTCAATGACGGAGCCGGCGCGTTCGTG    774
                     |.||.||.||.|||||.||.||..|||||||.||.||..|.|||.|..|.
BPUM_3373___m    719 TTACCGCTGGAAATGCACCAGGTATCAATGATGGCGCAAGTGCGCTACTT    768

BSNT_03598___    775 CTGATG---------TCTGAGGAAAAAGCTGC-TGAGCTTGGCAAACGGC    814
                     .|.|||         |.||    .|||||.|| |||   ||.|||   ||
BPUM_3373___m    769 TTAATGAAAGACACATATG----CAAAGCAGCATGA---TGTCAA---GC    808

BSNT_03598___    815 CTCTGGCTACAATTCTTGGTTTTTCAACTACGGGAATGCCAGCGCACGAG    864
                     |..||||    |.||.||.||..|||..|.|.|  ||   |||   ||  
BPUM_3373___m    809 CATTGGC----AGTCGTGCTTGGTCATGTGCAG--AT---AGC---CG--    844

BSNT_03598___    865 CTGGCGGCAGCGCCGGGGTTTGCCATTAACA--AGC--------TCCTGA    904
                      |.|.||||    ..||.|||.|||..||||  |||        ||..||
BPUM_3373___m    845 -TAGAGGCA----AAGGATTTTCCAAAAACACCAGCCTTTGCTATCGAGA    889

BSNT_03598___    905 A------AAAGAACGGTTTAACTGTCCAA----------GATATTGACTT    938
                     |      |.||||      |||.| .|||          ||||||||..|
BPUM_3373___m    890 AGATTTTACAGAA------AACAG-GCAAGCGTCTAGAGGATATTGATCT    932

BSNT_03598___    939 GTTTGAAGTAAATGAAGCTTTTGCTTCAGTTGT---TTTGACATGTGAAA    985
                     .||||||.|.|||||.||.||   .||||.|||   ..||.|.|||||||
BPUM_3373___m    933 ATTTGAAATCAATGAGGCATT---CTCAGCTGTGGCGCTGGCGTGTGAAA    979

BSNT_03598___    986 AAATCGTAGGTTTCGATC--TTGAAAAAGTAAATGTAAATGGCGGTGCGA   1033
                     |||||...||..|.||.|  ..|||||  |.|||.|.|||||.|||||..
BPUM_3373___m    980 AAATCACGGGGCTGGACCGGCGGAAAA--TGAATATCAATGGTGGTGCAG   1027

BSNT_03598___   1034 TCGCGCTCGGACACCCGATCGGCGCGAGCGGTGCGAGAATTCTCATGACG   1083
                     |.|||||.||.|||||.||.||.||.|||||..|..|.||..|..|||| 
BPUM_3373___m   1028 TTGCGCTTGGTCACCCTATTGGGGCAAGCGGAACACGTATCATATTGAC-   1076

BSNT_03598___   1084 CTTG-TTTATGAATTAAAGCGACGAGGAGGGGGTCTGGGCGTTGCCGCTA   1132
                     |||| ||.|||.||||||.|.|.||||.||.|||.|.|||.||||.||.|
BPUM_3373___m   1077 CTTGATTCATGCATTAAAACAAAGAGGTGGCGGTATTGGCATTGCGGCGA   1126

BSNT_03598___   1133 TTTGCAGCGG-GGCAGCACAGGGAGACGCCGTCTTAGTGCAGGTTCATTA   1181
                     |||||||.|| ||| |..||.|||||.|||.||.|..|..||||..||||
BPUM_3373___m   1127 TTTGCAGTGGAGGC-GGTCAAGGAGATGCCATCATGATAAAGGTAGATTA   1175

BSNT_03598___   1182 A   1182
                     |
BPUM_3373___m   1176 A   1176


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