Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05680 and BPUM_3370
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:16
# Commandline: needle
# -asequence dna-align/BSNT_05680___acdA.1.24716.seq
# -bsequence dna-align/BPUM_3370.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05680___acdA-BPUM_3370.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05680___acdA-BPUM_3370.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05680___acdA
# 2: BPUM_3370
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1179
# Identity: 839/1179 (71.2%)
# Similarity: 839/1179 (71.2%)
# Gaps: 75/1179 ( 6.4%)
# Score: 2822.0
#
#
#=======================================
BSNT_05680___ 1 ATGAATTTTTCATTATCAGAAGAACACCAGATGATACGAAAATTGGTGCG 50
|||.|.|||..||||...||.|||||..|.|||||.|.||||.|||||.|
BPUM_3370 1 ATGCAGTTTCAATTAAGTGATGAACATGAAATGATTCAAAAAATGGTGAG 50
BSNT_05680___ 51 CGATTTTGCGAAGCATGAGGTGGCCCCGACAGCGGCAGAACGGGACGA-A 99
.|||||||||||..||||.||.|..||.|||||.|||||.||.||.|| |
BPUM_3370 51 GGATTTTGCGAAAAATGAAGTAGAGCCAACAGCAGCAGAGCGAGATGAGA 100
BSNT_05680___ 100 CAAGAACGCTTCGATCGCGAGC--TGTTTCGGGAAATGGCTAATCTGGGG 147
||..|||| |..||| |.||| |.|||||..|||||||..|.||.||.
BPUM_3370 101 CAGAAACG-TATGAT--CCAGCTATTTTTCGCCAAATGGCAGAGCTCGGT 147
BSNT_05680___ 148 CTGACGGGAATTCCATGGCCTGAAGA--TTACGGCGGAATCGGAAGTGAC 195
.|.|||||.|||||.|||||.||||| || |||||.|||||.|||||.
BPUM_3370 148 TTAACGGGGATTCCTTGGCCGGAAGAGGTT--GGCGGGATCGGTAGTGAT 195
BSNT_05680___ 196 TATTTGGCCTACGTCATCGCGGTGGAGGAGCTGTCAAAAGTGTGCGCCTC 245
|||||..|||||||||||||.|||||||||||.||||.||||||.|||||
BPUM_3370 196 TATTTAACCTACGTCATCGCAGTGGAGGAGCTTTCAAGAGTGTGTGCCTC 245
BSNT_05680___ 246 CACCGGAGTGACGCTTTCAGCCCATATCTCTCTTTGCAGC-TGGCCGCTG 294
.||.||.||.|||||.||.|||||.|.||||| |.||..| |||||..|.
BPUM_3370 246 TACAGGCGTCACGCTCTCCGCCCACACCTCTC-TCGCCTCGTGGCCCATC 294
BSNT_05680___ 295 TTTGCCTTTGGGACGGAGGAACAGAAGACAGAG---TACTTAACACAACT 341
|.|.|.|||||.||.||.|||||.|| |||| ||.||||..|..||
BPUM_3370 295 TATACTTTTGGAACAGATGAACAAAA---AGAGACCTATTTAAAGCCGCT 341
BSNT_05680___ 342 GGCCCTCGGAGAGAAAATCGGCGCATTCGCATTGACCGA-AGCACGGTCT 390
.||....|||.||||..|.||.||||..|||.|.||.|| ||| .||||.
BPUM_3370 342 TGCAGAAGGACAGAAGGTAGGGGCATATGCACTCACTGAGAGC-GGGTCG 390
BSNT_05680___ 391 GGATCTGACGCCGGCAGCATGAAAACAACTGC--TGAACGAATCGGCGAT 438
||.||.||.||||||.|.||||..||.||.|| |.||.|.| |||..|
BPUM_3370 391 GGTTCGGATGCCGGCGGAATGAGGACGACGGCAGTAAAGGCA--GGCAGT 438
BSNT_05680___ 439 GACTATGTGTTAAATGGTTCCAAAGTGTTTATCACAAACGGCGGCGTTGC 488
||.||.||..|.||.|||.|.|||.|.|||||.|||||.||.|||.||||
BPUM_3370 439 GAATACGTCCTGAACGGTGCGAAAATCTTTATTACAAATGGGGGCATTGC 488
BSNT_05680___ 489 TGATATTTACATTGTTTTTGCCGTCACCGATCCCGAGAA-------AAAG 531
.|||..|||.|||||.|||||.||.||.|| ||.|||| ...|
BPUM_3370 489 GGATTATTATATTGTGTTTGCTGTGACAGA--CCAAGAAGCTGCATCTCG 536
BSNT_05680___ 532 AAAAAAGGCATTACCGCTTTTATAGTAGAAAAGGATTTTGA----AGGAT 577
|||.|.| ||.||.|||||.||||||||.|| || .||.|
BPUM_3370 537 AAATACG-----ACAGCCTTTATTGTAGAAAAAGA----GACACCGGGCT 577
BSNT_05680___ 578 TTTTTACAGGCAAGAAAGAAAAG-AAGCTGGGCATCCGTTCTTCACCGAC 626
|.|.....||.|| ||||.|||| ||.||||||||.||.||.||.||.||
BPUM_3370 578 TCTCGGTCGGTAA-AAAGGAAAGCAAACTGGGCATTCGCTCATCGCCAAC 626
BSNT_05680___ 627 AACGGAAATCATGTTCGAAGATTGTGTAGTGCCCG----CATCA----AA 668
.||.|||||....||.|||||||| ||| |||.| ||
BPUM_3370 627 GACTGAAATTCGATTTGAAGATTG--------CCGGATTCATGAAAAGAA 668
BSNT_05680___ 669 GCGTCTCGGACAAGAAGGAGAAGGCTTCAAAATCGCGATGAAGACGCTTG 718
.||.|||||||||||||||||||||||.|||||.||.||||.|||.||.|
BPUM_3370 669 CCGGCTCGGACAAGAAGGAGAAGGCTTTAAAATAGCAATGATGACCCTCG 718
BSNT_05680___ 719 ACGGAGGCAGAAACGGCATAGCTGCACAAGCCGTAGGCATCGCCCAAGGA 768
|.||.||||||||||||||.||||||||.||.||.||.||.||.|||||.
BPUM_3370 719 ATGGCGGCAGAAACGGCATTGCTGCACAGGCTGTTGGGATTGCACAAGGC 768
BSNT_05680___ 769 GCGCTTGATGCGGCGCTTCAATATGCAAAAGAGCGAAAGCAATTCGGAAA 818
||.|||||||||||..|.||.|||||.||.|||||.|||||||||||.||
BPUM_3370 769 GCTCTTGATGCGGCAGTCCATTATGCGAAGGAGCGCAAGCAATTCGGCAA 818
BSNT_05680___ 819 ATCGATCGGCGAGCAGCAGGGCATCGCTTTTAAACTCGCGGATATGGCGA 868
|.|.|||....|.|||||.||.|||||.|||||.||.||.||||||||.|
BPUM_3370 819 ACCAATCATTCAACAGCAAGGAATCGCGTTTAAGCTAGCAGATATGGCAA 868
BSNT_05680___ 869 CAATGATAGAAGCTTCAAGGCTATTGACCTATCAGGCTGCGTGGTTAGAA 918
|....||.|||||.||.||||||.|.||.||||||||.||.|||.|.|||
BPUM_3370 869 CCGCAATTGAAGCCTCCAGGCTACTCACTTATCAGGCAGCATGGCTCGAA 918
BSNT_05680___ 919 TC-ATCGGGCCTTCCATATGGAAAAGCTTCCGCTATGTCCAAACTGATGG 967
.| |..||| ||.||.||.|||||||..||.|||||||||||.||..|.|
BPUM_3370 919 ACGAAAGGG-CTCCCGTACGGAAAAGAATCAGCTATGTCCAAGCTCTTTG 967
BSNT_05680___ 968 CTGGGGATACGGCGATGAAGGTAACGACCGAAGCCGTGCAGATTTTCGGC 1017
||||.|||||.||.|||||||||||.||.||||||||.||.||.||||||
BPUM_3370 968 CTGGAGATACAGCCATGAAGGTAACAACAGAAGCCGTCCAAATCTTCGGC 1017
BSNT_05680___ 1018 GGCTACGGCTATACAAAAGATTATCCGGTAGAACGCTATATGCGTGATGC 1067
||||||||.||||||||.|||||.||.||.|||||.||.|||||||||||
BPUM_3370 1018 GGCTACGGGTATACAAAGGATTACCCAGTCGAACGATACATGCGTGATGC 1067
BSNT_05680___ 1068 AAAAATCACGCAAATCTATGAAGGCACTCAAGAAATTCAAAGACTGGTCA 1117
.||||||||.|||||.|||||||||||.||.|||||.||..|.||.||||
BPUM_3370 1068 GAAAATCACCCAAATTTATGAAGGCACACAGGAAATCCAGCGCCTAGTCA 1117
BSNT_05680___ 1118 TCTC---CAGAATGCTCGCGGAT---TAA 1140
|||| ||.|.|.|| .||| ||.
BPUM_3370 1118 TCTCGCGCAAACTACT---AGATATGTAG 1143
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