Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05670 and BPUM_3356
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:16
# Commandline: needle
# -asequence dna-align/BSNT_05670___ywjH.1.24716.seq
# -bsequence dna-align/BPUM_3356___ywjH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05670___ywjH-BPUM_3356___ywjH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05670___ywjH-BPUM_3356___ywjH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05670___ywjH
# 2: BPUM_3356___ywjH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 642
# Identity: 498/642 (77.6%)
# Similarity: 498/642 (77.6%)
# Gaps: 6/642 ( 0.9%)
# Score: 1897.0
#
#
#=======================================
BSNT_05670___ 1 ATGTTATTCTTTGTTGATACAGCCAATATCGATGAAATTAGAGAAGCGAA 50
||||||||.||.||.||||||||.|||||||..||.||.|.|||.|||.|
BPUM_3356___y 1 ATGTTATTTTTCGTAGATACAGCGAATATCGCAGACATCAAAGAGGCGCA 50
BSNT_05670___ 51 TGAATTAGGAATTCTCGCCGGTGTAACGACGAATCCTAGTTTAGTAGCAA 100
.||..|.||.|||.|.||.||.||.||.||.||.||||||||||||||.|
BPUM_3356___y 51 CGAGCTTGGCATTTTAGCAGGCGTCACAACAAACCCTAGTTTAGTAGCGA 100
BSNT_05670___ 101 AGGAAGCTAACGTATCATTCCACGACCGTCTTCGCGAGATCACAGACGTC 150
|.|||....|||||||||||||.||||||||||||||.|||||.|||||.
BPUM_3356___y 101 AAGAAAAGGACGTATCATTCCATGACCGTCTTCGCGAAATCACTGACGTG 150
BSNT_05670___ 151 GTGAAAGGGTCTGTAAGCGCAGAGGTTATTTCTTTGAAAGCTGAGGAAAT 200
||...|||.|||||.||.|||||.||||||||..|.|||||.||.|||||
BPUM_3356___y 151 GTATCAGGTTCTGTCAGTGCAGAAGTTATTTCCCTCAAAGCAGAAGAAAT 200
BSNT_05670___ 201 GATCGAGGAAGGAAAAGAACTGGCGAAGATCGCTCCGAACATTACGGTGA 250
|||.||.|||||||||||.||.||....||.||.||.||.||.|||||||
BPUM_3356___y 201 GATTGAAGAAGGAAAAGAGCTTGCTGCCATTGCACCAAATATCACGGTGA 250
BSNT_05670___ 251 AAATCCCAATGACGTCTGACGGTTTAAAAGCGGTAAGAGCACTTACTGAC 300
|||||||||||||..|.||.|||.|.|||||.||.|.|||..|.||.|||
BPUM_3356___y 251 AAATCCCAATGACAACAGATGGTCTTAAAGCTGTCAAAGCGTTAACAGAC 300
BSNT_05670___ 301 TTAGGCATCAAAACAAACGTTACATTGATCTTCAATGCCAACCAGGCGCT 350
.|.||.||.||||||||.||.||.|||||.||.|.|||.|||||.||..|
BPUM_3356___y 301 CTTGGAATTAAAACAAATGTCACTTTGATTTTTAGTGCAAACCAAGCATT 350
BSNT_05670___ 351 TCTTGCTGCCAGAGCGGGGGCAACATATGTATCTCCATTCCTGGGACGTT 400
.|||||.||.|||||.||.||.||.|||||.|||||||||||.||.||.|
BPUM_3356___y 351 GCTTGCAGCTAGAGCTGGTGCGACGTATGTCTCTCCATTCCTCGGCCGCT 400
BSNT_05670___ 401 TAGATGACATCGGCCACAACGGGCTTGACCTGATTTCA--GAAGTTAAAC 448
||||||||||.|||||.||.||.||.||.||.| ||| |||||.|||.
BPUM_3356___y 401 TAGATGACATTGGCCAAAATGGTCTCGATCTCA--TCAGTGAAGTGAAAA 448
BSNT_05670___ 449 AGATTTTTGATATTCACGGCCTTGACACACAAATCATTGCAGCGTCCATC 498
..|||||||||.||||.||..|.||.||||||||||||||.||.|||||.
BPUM_3356___y 449 CCATTTTTGATGTTCATGGTTTAGATACACAAATCATTGCTGCATCCATT 498
BSNT_05670___ 499 CGCCACCCGCAGCACGTGACAGAAGCCGCTCTTAGAGGGGCTCATATCGG 548
||.||.||||||||||||||||||||.||.||||||||.|||||||||||
BPUM_3356___y 499 CGTCATCCGCAGCACGTGACAGAAGCTGCGCTTAGAGGTGCTCATATCGG 548
BSNT_05670___ 549 CACAATGCCGCTGAAAGTCATTCATGC-GCTCACTAAACACCCGTTAACA 597
|||||||||||||||||||| |||.|| |||.||.||||||||.|||||.
BPUM_3356___y 549 CACAATGCCGCTGAAAGTCA-TCAAGCAGCTGACGAAACACCCATTAACG 597
BSNT_05670___ 598 GACAAAGGAATCGAACAATTCCTGGCAGACTGGAACAAATAA 639
||....||.||.||.|||||..|.|||||||||||.||||||
BPUM_3356___y 598 GATGCGGGCATTGAGCAATTTTTAGCAGACTGGAATAAATAA 639
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