Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05666 and BPUM_3354
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:15
# Commandline: needle
# -asequence dna-align/BSNT_05666___murAB.1.24716.seq
# -bsequence dna-align/BPUM_3354___murAB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05666___murAB-BPUM_3354___murAB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05666___murAB-BPUM_3354___murAB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05666___murAB
# 2: BPUM_3354___murAB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1308
# Identity: 989/1308 (75.6%)
# Similarity: 989/1308 (75.6%)
# Gaps: 36/1308 ( 2.8%)
# Score: 3624.0
#
#
#=======================================
BSNT_05666___ 1 ATGGAAAAGTTGAATATTGCCGGCGGTGACTCGTTAAACGGTACAGTACA 50
|||||||||||.||.|||||||||||||||.|.|||..|||.||.|||||
BPUM_3354___m 1 ATGGAAAAGTTAAACATTGCCGGCGGTGACCCCTTACGCGGGACCGTACA 50
BSNT_05666___ 51 TATCAGCGGCGCTAAAAACAGCGCTGTTGCGTTAATACCTGCAACCATTT 100
|||.||.||.||.|||||.||.||.||.||..|.||.|||||.||.|||.
BPUM_3354___m 51 TATTAGTGGTGCGAAAAATAGTGCAGTGGCACTGATTCCTGCCACGATTC 100
BSNT_05666___ 101 TGGCAAATTC-CGAGGTGACAATTGAAGGGCTTCCAGAGATTTCAGATAT 149
|.||..|||| |.| ||.||.|||||.||.|||||..|.|||||||||||
BPUM_3354___m 101 TCGCTGATTCTCCA-GTAACGATTGAGGGCCTTCCGCATATTTCAGATAT 149
BSNT_05666___ 150 TGAAACGCTGCGTGACCTGTTAAAGGAAATCGGCGGCAACGTGCA-TTTT 198
|||.||..|.||.||.||||||.|.||.||.|||||.||.|| || .|||
BPUM_3354___m 150 TGACACATTACGAGATCTGTTAGAAGAGATTGGCGGAAAGGT-CACATTT 198
BSNT_05666___ 199 GAGAATGGGGAAATGGTTGTTGACCCTACGTCGATGATCAGCATGCCGCT 248
||.||.||.||||||||.||..|.|||.|.||.||||||||.||||||||
BPUM_3354___m 199 GAAAAAGGCGAAATGGTCGTCAATCCTGCTTCCATGATCAGTATGCCGCT 248
BSNT_05666___ 249 TCCTAACGGGAAAGTAAAAAAGCTTCGCGCGTCATATTATTTAATGGGGG 298
||||||.||.|||||.||.||.||.||.|||||.||||||||||||||.|
BPUM_3354___m 249 TCCTAATGGAAAAGTGAAGAAACTGCGTGCGTCTTATTATTTAATGGGCG 298
BSNT_05666___ 299 CGATGCTCGGCCGCTTCAAGCAGGCGGTCATTGGATTGCCTGGCGGCTGT 348
|.|||||.||..|.|||||||||||.||||||||..||||.||.||.||.
BPUM_3354___m 299 CTATGCTGGGAAGATTCAAGCAGGCTGTCATTGGGCTGCCAGGAGGATGC 348
BSNT_05666___ 349 CACTTAGGGCCCCGTCCGATTGATCAGCATATCAAAGGCTTTGAAGCACT 398
||||||||.||..|.|||||||||||||||||||||||.|||||||||||
BPUM_3354___m 349 CACTTAGGACCTAGGCCGATTGATCAGCATATCAAAGGGTTTGAAGCACT 398
BSNT_05666___ 399 CGGAGCTGAAGTAACCAATGAACAAGGCGCCATTTATTTGCGAGCTGAAA 448
||||||.||.||.||.||.||.||.||.||||||||||||||.|||||||
BPUM_3354___m 399 CGGAGCCGAGGTGACAAACGAGCAGGGTGCCATTTATTTGCGCGCTGAAA 448
BSNT_05666___ 449 GGCTGAG-AGGCGCACGGATTTATTTAGATGTCGTTAGCGTTGGGGCAAC 497
..|.|| .||.||.||.|||||..|.|||||.||.||.||.||.||.||
BPUM_3354___m 449 -AATTAGTTGGAGCCCGTATTTACCTTGATGTGGTCAGTGTAGGTGCGAC 497
BSNT_05666___ 498 GATTAACATTATGCTCGCCGCTGTTTTGGCAGAAGGGAAAACGATCATCG 547
.||.||.||.|||||.||.|||||..||||.|||||.||||||.|.||.|
BPUM_3354___m 498 CATCAATATCATGCTGGCAGCTGTACTGGCTGAAGGAAAAACGTTAATTG 547
BSNT_05666___ 548 AAAACGCTGCCAAGGAGCCTGAGATCATTGACGTCGCGACATTGCTTACC 597
||||.||.||.||.||.||.||.||.|||||.||.||.|||||||||.|.
BPUM_3354___m 548 AAAATGCCGCAAAAGAACCCGAAATTATTGATGTAGCCACATTGCTTGCG 597
BSNT_05666___ 598 AGCATGGGCGCCAAAATCAAAGGTGCGGGCACCAATGTGATTCGAATCGA 647
||||||||.||||||||||||||||||||.||..||||||||||||||||
BPUM_3354___m 598 AGCATGGGAGCCAAAATCAAAGGTGCGGGTACTGATGTGATTCGAATCGA 647
BSNT_05666___ 648 CGGCGTGAAGGAA---CTGCACGGCTGCAAGCATACGATCATTCCGGACA 694
.||.|| .||| ||.||.|||||.||||||.|.|||||.||.||..
BPUM_3354___m 648 AGGTGT---AGAATCTCTTCATGGCTGTAAGCATTCCATCATCCCTGATC 694
BSNT_05666___ 695 GAATTGAGGCCGGGACATTTATGATTGCAGGGGCTGCAATGGGCAAGGAA 744
|.||.||.||.||.||.|||.|.|||||.||.|||||.|||||..|.|||
BPUM_3354___m 695 GTATAGAAGCAGGCACTTTTTTAATTGCCGGTGCTGCGATGGGAGATGAA 744
BSNT_05666___ 745 GTCATTATCGATAACGTCATTCCCACTCATCTAGAGTCGTTAACGGCAAA 794
||..|..|.|||||.||.||.||.||||||.||||.||..|.|||||.||
BPUM_3354___m 745 GTTGTACTTGATAATGTGATCCCAACTCATTTAGAATCAATTACGGCGAA 794
BSNT_05666___ 795 GCTGAGAGAAATGGGCTATCA-TATCGAAACAAGCGACGACCAGCTTCTC 843
.||.|||||.|||||.| ||| .||.|||||||||.||||.||..|.||.
BPUM_3354___m 795 ACTTAGAGAGATGGGGT-TCACCATTGAAACAAGCAACGATCAAATGCTG 843
BSNT_05666___ 844 ATTGTCGGCGGGCA-GAAGAACTTAAAGCCGGTTGACGTCAAAACCCTCG 892
||.||.|||.|..| ||||.|| |.|||||.||.||..|.||||||||.|
BPUM_3354___m 844 ATCGTTGGCAGAAACGAAGGAC-TCAAGCCTGTCGATATTAAAACCCTTG 892
BSNT_05666___ 893 TATACCCGGGGTTTCCGACTGATTTACAGCAGCCGATGACGGCGCTCCTG 942
|.||.|||||.|||||.||.||..|.||||||||||||||||||||..|.
BPUM_3354___m 893 TGTATCCGGGCTTTCCAACGGACCTTCAGCAGCCGATGACGGCGCTGTTA 942
BSNT_05666___ 943 ACAAGGGCGAAAGGGACGAGTGTCGTCACAGACACCATCTACTCGGCAAG 992
||||.|||||||||.||||||||.||||||||.||.||||||||.||..|
BPUM_3354___m 943 ACAAAGGCGAAAGGCACGAGTGTGGTCACAGATACGATCTACTCAGCCCG 992
BSNT_05666___ 993 ATTCAAGCACATTGATGAGCTGAGACGAATGGGCGCCAATATGAAAGTAG 1042
.||.|||||.|||||.||..||.|.||||||||.||.||.|||||.||.|
BPUM_3354___m 993 CTTTAAGCATATTGACGAATTGCGTCGAATGGGTGCAAACATGAAGGTCG 1042
BSNT_05666___ 1043 AAGGCAGATCTGCCATCATCACAGGTC-----CTGTCGAGCTTCAAGGCG 1087
||||.|||||||||||.||.||.||.| | ||||||||||.|
BPUM_3354___m 1043 AAGGAAGATCTGCCATTATTACTGGACAAACGC-----AGCTTCAAGGAG 1087
BSNT_05666___ 1088 CAAAAGTGAAGGCGAGTGATCTGCGTGCCGGAGCCTGCTTG----GTGGT 1133
||||.|||||.||.|||||.||||||||.|| |||||| |||||
BPUM_3354___m 1088 CAAAGGTGAAAGCAAGTGACCTGCGTGCAGG----TGCTTGTCTCGTGGT 1133
BSNT_05666___ 1134 AGCCGGACTGATGGCTGATGGCGTCACGGAAATTACGGGACTGGAGCATA 1183
.||.||..|.|||||.||.||.||.||.|||||.||.||.||.||.||||
BPUM_3354___m 1134 TGCAGGGTTAATGGCAGACGGTGTGACCGAAATCACAGGGCTTGAACATA 1183
BSNT_05666___ 1184 TTGACCGCGGATACAGCAGCCTTGAGAAGAAGCTTGAGGGGCTT-GGAGC 1232
|.|||.|.|||||.||....||||||||||||||||| .||||| ||.||
BPUM_3354___m 1184 TAGACAGAGGATATAGTTTGCTTGAGAAGAAGCTTGA-AGGCTTGGGTGC 1232
BSNT_05666___ 1233 GACAATTTGGCGTGAAAGAATGACTGACGAAGAAATAGAACAGCTTCAAA 1282
.||.||.||||||||||...|||.||||.|||||||||||.|.|||||||
BPUM_3354___m 1233 AACCATCTGGCGTGAAAAGCTGAGTGACCAAGAAATAGAAGAACTTCAAA 1282
BSNT_05666___ 1283 ATTCATAA 1290
||||||||
BPUM_3354___m 1283 ATTCATAA 1290
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