Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05656 and BPUM_3348
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:15
# Commandline: needle
# -asequence dna-align/BSNT_05656___ywkA.1.24716.seq
# -bsequence dna-align/BPUM_3348___ywkA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05656___ywkA-BPUM_3348___ywkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05656___ywkA-BPUM_3348___ywkA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05656___ywkA
# 2: BPUM_3348___ywkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1722
# Identity: 1340/1722 (77.8%)
# Similarity: 1340/1722 (77.8%)
# Gaps: 45/1722 ( 2.6%)
# Score: 5130.0
#
#
#=======================================
BSNT_05656___ 1 TTGAATAACATAAAAAAAACGAAAGAAGGCCACTTAGAAACAACTCTTAG 50
.||||.|||.|.||.|||||.||||||||..||.|.|||||.|||.|.|.
BPUM_3348___y 1 ATGAACAACGTGAAGAAAACAAAAGAAGGGTACCTCGAAACCACTTTGAC 50
BSNT_05656___ 51 AGGAAAAGAAGTTTTATCTATTCCTACTTTAAATAAAGGCGTTGCTTTTT 100
|||.|||||.||.|||||.|||||.||.||.||.||||||||||||||.|
BPUM_3348___y 51 AGGTAAAGATGTATTATCGATTCCAACGTTGAACAAAGGCGTTGCTTTCT 100
BSNT_05656___ 101 CAATAGAAGAAAGACAAGAACTCGGCTTAGAAGGGCTT-CTGCCGCCAAC 149
|...|||||||||||||||.||.||..||||| ||||| ||.||.|||||
BPUM_3348___y 101 CTGAAGAAGAAAGACAAGAGCTTGGACTAGAA-GGCTTACTTCCTCCAAC 149
BSNT_05656___ 150 TGTACTTTCTCTTGATCAACAAGCACAACGCGCGTACGAGCAATTCCAAG 199
|||.||..||.|.||.||||||||..|..|.||||||.|||||||||.||
BPUM_3348___y 150 TGTTCTCACTTTAGAACAACAAGCGGAGAGAGCGTACAAGCAATTCCTAG 199
BSNT_05656___ 200 CGCAGCCTGACCGCCTTCGTCAAAATGTTTACTTAAGTGATCTTGC-AAA 248
|.|||||.||.||.|||||||||||.||.|||||||||||| |||| |||
BPUM_3348___y 200 CACAGCCAGATCGTCTTCGTCAAAACGTATACTTAAGTGAT-TTGCAAAA 248
BSNT_05656___ 249 CCGTAACGAAGTTCTTTTCTATAAATTGCTGA---AAAACCATCTTCGCG 295
||||||||||||..|.|||||||| |||.| .|.||.|.|||||.|
BPUM_3348___y 249 CCGTAACGAAGTATTGTTCTATAA---GCTTATATCAGACAAGCTTCGTG 295
BSNT_05656___ 296 AAATGCTTCCTGTTGTGTACACGCCAACAGTTGGTGAAGCGATTCAGGAA 345
||||||||||.|||||||||||.|||||.|||||||||||||||||.|||
BPUM_3348___y 296 AAATGCTTCCAGTTGTGTACACACCAACTGTTGGTGAAGCGATTCAAGAA 345
BSNT_05656___ 346 TACAGCCATGAATATAGAAGACCTCAAGGAATCTA-CTTGTCAATCGACA 394
||||||||||||||.|||||||||||.||..|||| ||| ||||||||||
BPUM_3348___y 346 TACAGCCATGAATACAGAAGACCTCATGGTGTCTATCTT-TCAATCGACA 394
BSNT_05656___ 395 ACATTGACGGTATTGAAAAAGCGTTTGAAAACCTTCACGCGACAGCAGGC 444
||||||||||.|||||.|||||.|||||||||.|.||.||.||||||||.
BPUM_3348___y 395 ACATTGACGGCATTGAGAAAGCATTTGAAAACTTACATGCAACAGCAGGA 444
BSNT_05656___ 445 GATATTGATCTTATCGTTGCTACTGACTCCGAAAGCATTCTCGGTATCGG 494
|||||.||.||.|||||.||.||||||||.||.||||||||.||.||.||
BPUM_3348___y 445 GATATCGACCTAATCGTAGCAACTGACTCTGAGAGCATTCTTGGAATTGG 494
BSNT_05656___ 495 TGACTGGGGTGTAGGCGGTATTAATATCGCAATCGGTAAATTGGCTGTTT 544
||||||||||||.||.|||||.||.|||||||||||||||||.|||||||
BPUM_3348___y 495 TGACTGGGGTGTCGGTGGTATCAACATCGCAATCGGTAAATTAGCTGTTT 544
BSNT_05656___ 545 ACACTGCTGCAGCTGGTATTGACCCTAGCCGTGTTATCCCGGTTGTGCTT 594
||||.||||||||.||||||||.||.|||||.||.||.||.||.||..|.
BPUM_3348___y 545 ACACGGCTGCAGCAGGTATTGATCCAAGCCGCGTGATTCCAGTCGTATTA 594
BSNT_05656___ 595 GATGTCGGTACGAACAACGAAAAACTTCTAAACGATCCTTTATATATTGG 644
|||||.||.||.|||||.||||||.|..|.||.|||||.|||||.||.||
BPUM_3348___y 595 GATGTTGGAACAAACAATGAAAAATTATTGAATGATCCATTATACATCGG 644
BSNT_05656___ 645 TAACAAGCATGAACGTGTTCAAGGTGAACGCTACGAAGCTTTCATTGACG 694
.|||.|.||..|||||||.|||||||||...|||||.|..||||||||.|
BPUM_3348___y 645 AAACCACCACAAACGTGTACAAGGTGAAAAATACGAGGAATTCATTGATG 694
BSNT_05656___ 695 CTTATGTAAAAGCTGCATTGAAATTCTTCCCTAAAGCGCTTCTTCACTGG 744
|||||||||||||.||..|.|||||||||||.|||||..|.|||||||||
BPUM_3348___y 695 CTTATGTAAAAGCAGCGCTTAAATTCTTCCCGAAAGCATTACTTCACTGG 744
BSNT_05656___ 745 GAAGACCTTGGCAACAAAAATGCACGCAACATCATGAAAAAATACAATCA 794
|||||||||||.||||||||.|||||.|||||||||||||||||||||.|
BPUM_3348___y 745 GAAGACCTTGGAAACAAAAACGCACGTAACATCATGAAAAAATACAATGA 794
BSNT_05656___ 795 TGAAATCCTGACATTTAATGATGATATTCAAGGTACTGGCGCGATTACAC 844
|.|.|||.|.|||||.|||||||||||||||||||||||.||.|||||..
BPUM_3348___y 795 TAACATCTTAACATTCAATGATGATATTCAAGGTACTGGTGCCATTACTT 844
BSNT_05656___ 845 TTGCTGGTGTGCTTGCCGCTATGAAGAAAACAGGCGCTTCTATT-AAAGA 893
|.||.|||||.|||||.|||.|.||||||||.||..| ||.||| |||||
BPUM_3348___y 845 TAGCGGGTGTTCTTGCGGCTGTCAAGAAAACTGGTAC-TCAATTGAAAGA 893
BSNT_05656___ 894 TCAGCGTGTTGTTATCTTCGGTGCCGGTTCTGCTGGTATCGGTATTGCTG 943
|||.|||||..|.||||||||.||.|||||.|||||.|||||.||.||.|
BPUM_3348___y 894 TCACCGTGTGATGATCTTCGGAGCTGGTTCAGCTGGAATCGGAATCGCAG 943
BSNT_05656___ 944 ACCAAATCCGTGACACAATGGTGCTAGCCGGATTATCTGAAGAAGAAGCT 993
|.|||||.||||||||||||||.||.|..||..||.|||||||||||||.
BPUM_3348___y 944 ATCAAATGCGTGACACAATGGTTCTTGAAGGTCTAACTGAAGAAGAAGCA 993
BSNT_05656___ 994 AACAAACGTTTCTACACACTTGATTACAGAGGCTTGCTGACTGAAGACAT 1043
|||||...|||||..|||.|.||.||||||||.||..||||.||..|..|
BPUM_3348___y 994 AACAATGCTTTCTGGACATTAGACTACAGAGGTTTATTGACAGATCAATT 1043
BSNT_05656___ 1044 CGAAG--GCA-TCCTTGATTTCCAAAGACCTTACCTTCGCAATGCGGATG 1090
||||| |.| |..||||||||||||.|||.||||||||...|.|.||||
BPUM_3348___y 1044 CGAAGATGAAGTGTTTGATTTCCAAAAACCATACCTTCGTTCTTCTGATG 1093
BSNT_05656___ 1091 AAGTGAAAGACTGGAAGCGTGATGAAAAAGGTCAAATTCCATTCGATGAA 1140
||||..|||.||||...||||||||||||||.|||||..||||.|.||||
BPUM_3348___y 1094 AAGTAGAAGGCTGGGCACGTGATGAAAAAGGCCAAATCTCATTTGCTGAA 1143
BSNT_05656___ 1141 GTTGTTCGTCAAGCGAAACCAACAATCTTGATTGGTACTTCAGGGGTTTC 1190
|.||||||.||.|.|||.|||||.||..|.||||||||.||||| ||
BPUM_3348___y 1144 GCTGTTCGCCAGGTGAAGCCAACGATTCTAATTGGTACATCAGG----TC 1189
BSNT_05656___ 1191 A----GGTGCATTCACAGAGGAAATTGTAAAAGAAATGGCATCTCACGTA 1236
| ||.||||||||.||.|||||..|.||||||||.|||.||||...|
BPUM_3348___y 1190 AAGGCGGCGCATTCACTGAAGAAATCATTAAAGAAATCGCAGCTCATACA 1239
BSNT_05656___ 1237 GACCGTCCGGTTATCATGCCGATGTCTAACCCGACTCACCTTGCTGAAGC 1286
||.||.||.||.||||||||.|||||||||||.||.|..|||||.|||||
BPUM_3348___y 1240 GAGCGCCCAGTGATCATGCCAATGTCTAACCCAACACCACTTGCGGAAGC 1289
BSNT_05656___ 1287 TGTTCCTGAAGATCTGTTCAAATGGACTGACGGAAAAGTG--CTTATTGC 1334
.|||||.||||||||.|||||||||||.||||| ..||| |||.||||
BPUM_3348___y 1290 AGTTCCAGAAGATCTATTCAAATGGACAGACGG--CCGTGCACTTGTTGC 1337
BSNT_05656___ 1335 AACAGGAAGCCCATTTGACAATGTAGAATACAACGGTGTTTCTTATGAAA 1384
||||||||||||.||.||.||.||.||.||.|||||..||....||||||
BPUM_3348___y 1338 AACAGGAAGCCCGTTCGAAAACGTTGAGTATAACGGAATTGAACATGAAA 1387
BSNT_05656___ 1385 TCGGACAATCTAACAACGCATTCGCGTTCCCTGGTCTTGGACTTGGTTCA 1434
|.||||||||.|||||.||.||||..||||||||.|||||.|||||||||
BPUM_3348___y 1388 TTGGACAATCAAACAATGCGTTCGTATTCCCTGGACTTGGTCTTGGTTCA 1437
BSNT_05656___ 1435 ATTGTAGCTGAAGCGCGTATCATTACACCTGCTATGTTTGCTGCAACTGC 1484
||.|||.|.|||.|....|||||.|||...|..|||||.|.|||..|.||
BPUM_3348___y 1438 ATCGTAACGGAATCAAAAATCATCACAAAAGGCATGTTCGTTGCTTCAGC 1487
BSNT_05656___ 1485 TGATGCGATTGCTGAAATGGTTGATTTTGAAACACCTGGAGCAGGATTGC 1534
.||||||||||||||||||||||||..|||.|.|||.||.||.||..|.|
BPUM_3348___y 1488 GGATGCGATTGCTGAAATGGTTGATCATGATAAACCAGGTGCTGGTCTAC 1537
BSNT_05656___ 1535 TTCCAAGCATTGATAAGCTTCAAGAGGTTTCTATCCAAGTTGCGATTGCC 1584
|||||||||||||||||.|.|||||.||||||||..||||.||.||||..
BPUM_3348___y 1538 TTCCAAGCATTGATAAGTTACAAGAAGTTTCTATTAAAGTGGCTATTGAA 1587
BSNT_05656___ 1585 GTTGCTGAAGCAGCAATTAAAGACGGCGTGGC-----AAATCGTCAGCCT 1629
||.||..||||||||||||||||.||.||.|| ||| || |||
BPUM_3348___y 1588 GTAGCAAAAGCAGCAATTAAAGATGGTGTCGCAAGAAAAA----CA-CCT 1632
BSNT_05656___ 1630 GAAGATGTGAAACAAGCGGTACTTGATGCAATGTGGACACCTGAATACAA 1679
||.||..|..|||||||.||....|||||||||||||..||||||||.||
BPUM_3348___y 1633 GACGACATCGAACAAGCTGTGAAAGATGCAATGTGGATTCCTGAATATAA 1682
BSNT_05656___ 1680 AAAA---GTCATCGCGAAATAA 1698
|||| ||.|..|| ||||
BPUM_3348___y 1683 AAAAATTGTAAGAGC---ATAA 1701
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