Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05637 and BPUM_3335
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_05637___glyA.1.24716.seq
# -bsequence dna-align/BPUM_3335___glyA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05637___glyA-BPUM_3335___glyA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05637___glyA-BPUM_3335___glyA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05637___glyA
# 2: BPUM_3335___glyA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1255
# Identity: 992/1255 (79.0%)
# Similarity: 992/1255 (79.0%)
# Gaps: 14/1255 ( 1.1%)
# Score: 3862.0
#
#
#=======================================
BSNT_05637___ 1 ATGAAACATTTACCTGCGCAAGACGAACAAGTGTTTAACGCCATTAAAAA 50
||||||||||||||||.||||||||.||||||.||.||.||.|||.||..
BPUM_3335___g 1 ATGAAACATTTACCTGAGCAAGACGCACAAGTATTCAAGGCAATTCAACT 50
BSNT_05637___ 51 TGAGCGTGAACGCCAACA-GACTAAGATCGAATTGATTGCTTCTGAGAAC 99
.|||||..|||||||.|| ||| ||.||.|||||.|||||.||.||.|||
BPUM_3335___g 51 AGAGCGGAAACGCCAGCAGGAC-AAAATTGAATTAATTGCATCAGAAAAC 99
BSNT_05637___ 100 TTTGTAAGTGAAGCGGTTATGGAAGCACAAGGATCTGTTTTGACAAATAA 149
||||||||.|||||.||.||||||||.|||||.|||||.||.|||||.||
BPUM_3335___g 100 TTTGTAAGCGAAGCAGTCATGGAAGCCCAAGGTTCTGTATTAACAAACAA 149
BSNT_05637___ 150 GTACGCAGAAGGATATCCGGGCAAACGCTACTACGGCGGATGCGAGCACG 199
.||.|||||.||.|||||.||.|||||||||||.|||||.||.||.||.|
BPUM_3335___g 150 ATATGCAGAGGGCTATCCTGGTAAACGCTACTATGGCGGCTGTGAACATG 199
BSNT_05637___ 200 TCGATGTCGTTGAAGATATCGCCCGTGACCGCGCGAAGGAAATCTTTGGA 249
|.||.||.||.|||||||||||.|||||||||||.||.|||||.|||||.
BPUM_3335___g 200 TAGACGTTGTAGAAGATATCGCACGTGACCGCGCAAAAGAAATTTTTGGC 249
BSNT_05637___ 250 GCGGAGCATGTAAACGTTCAGCCTCATTCAGGCGCGCAAGCAAACATGGC 299
||.|||.||||.|||||.||||||||.|||||.||.|||||.||||||||
BPUM_3335___g 250 GCTGAGTATGTGAACGTACAGCCTCACTCAGGTGCTCAAGCGAACATGGC 299
BSNT_05637___ 300 AGTGTACTTCACGATTTTGGAGCAAGGCGATACTGTACTTGGGATGAACC 349
.||.|||||.||.|||.|.|||||.||||||||.||.||.||.||||||.
BPUM_3335___g 300 CGTATACTTTACCATTCTTGAGCATGGCGATACAGTGCTAGGTATGAACT 349
BSNT_05637___ 350 TCTCCCACGGCGGCCATTTAACACACGGAAGCCCAGTCAACTTCAGCGGT 399
|.||.||.|||||.||||||||||||||||||||.||.|||||.||.|||
BPUM_3335___g 350 TGTCACATGGCGGGCATTTAACACACGGAAGCCCTGTTAACTTTAGTGGT 399
BSNT_05637___ 400 GTTCAATATAACTTTGTTGAGTACGGCGTAGATAAAGAAACTCAATATAT 449
||.||.||.||||||||.||.||.||.||.|||||||||||.||..||||
BPUM_3335___g 400 GTACAGTACAACTTTGTAGAATATGGTGTTGATAAAGAAACACAGCATAT 449
BSNT_05637___ 450 TGATTACGATGACGTGCGTGAAAAAGCCCTCGCTCATAAACCGAAGCTTA 499
.||.||..|.||.||.|.|||||||||.|..|..|||||.||||||||.|
BPUM_3335___g 450 CGACTATCAAGATGTACTTGAAAAAGCACGTGAACATAAGCCGAAGCTCA 499
BSNT_05637___ 500 TCGTAGCAGGAGCAAGTGCGTATCCTCGTACAATCGACTTTAAGAAATTC 549
|.||.||.||.||||||||.||.||.|||..|||.||.||.||.||.|||
BPUM_3335___g 500 TTGTTGCGGGTGCAAGTGCATACCCACGTCAAATTGATTTCAAAAAGTTC 549
BSNT_05637___ 550 CGTGAAATTGCTGATGAAGTCGGCGCTTACTTCATGGTGGATATGGCACA 599
|||||.|||||.|||||||||||.||||||||.|||||.||.|||||.||
BPUM_3335___g 550 CGTGAGATTGCGGATGAAGTCGGTGCTTACTTTATGGTCGACATGGCTCA 599
BSNT_05637___ 600 TATCGCAGGACTTGTTGCGGCAGGCCTTCATCCAAACCCGGTTCCTTACG 649
.||.|||||.||||||||.|.|||.|||||||||||.||.|||||.||.|
BPUM_3335___g 600 CATTGCAGGTCTTGTTGCAGTAGGTCTTCATCCAAATCCAGTTCCATATG 649
BSNT_05637___ 650 CTGATTTCGTTACAACAACAACACATAAAACACTTCGCGGTCCTCGCGGC 699
|.|||||.||.|||||.||.||.||.||||||.|.||.||.||.||||||
BPUM_3335___g 650 CAGATTTTGTGACAACGACGACTCACAAAACATTACGTGGACCACGCGGC 699
BSNT_05637___ 700 GGTATGATCCTTTGCCGTGAAGAGTTTGGCAAGAAAATTGATAAATCGAT 749
||.|||||.||.|||||||||||||||||.||.||.||.||.||||||||
BPUM_3335___g 700 GGAATGATTCTATGCCGTGAAGAGTTTGGTAAAAAGATCGACAAATCGAT 749
BSNT_05637___ 750 CTTCCCTGGAATTCAAGGCGGCCCGCTGATGCACGTTATTGCCGCAAAAG 799
|||||||||.||||||||.||.||.||||||||.||.||..|.|||||||
BPUM_3335___g 750 CTTCCCTGGTATTCAAGGTGGACCACTGATGCATGTCATCTCTGCAAAAG 799
BSNT_05637___ 800 CTGTTTCATTCGGTGAAGTATTGCA-GGACGATTTCAAAACATATGCACA 848
|||||||.|||||||||||||||.| ||| |||||.||||||||||||||
BPUM_3335___g 800 CTGTTTCTTTCGGTGAAGTATTGAACGGA-GATTTTAAAACATATGCACA 848
BSNT_05637___ 849 AAACGTCATTTCAAACGCGAAAC-GTCTGGCTGAAGCC---TTAACGAAA 894
||||||||||...||.||.||.| || |.||||||.|| |||.|..||
BPUM_3335___g 849 AAACGTCATTGACAATGCAAAGCAGT-TAGCTGAAACCCTTTTATCTGAA 897
BSNT_05637___ 895 GAGGGCATCCAGCTCGTTTCAGGCGGAACAGACAACCACCTTATCCTTGT 944
|| .||.|||||.||.||.||.|||||.||.|||||||||.|.|||.|
BPUM_3335___g 898 GA---TATTCAGCTTGTGTCTGGTGGAACGGATAACCACCTTGTTCTTAT 944
BSNT_05637___ 945 TGACCTTCGTTCGCTCGGACTGACTGGTAAGGTTGCGGAGCATGTACTTG 994
.|||.|.|||||.||.||..|.||.||.||..||||.||..||||.||||
BPUM_3335___g 945 CGACTTGCGTTCTCTTGGCATCACAGGAAAAATTGCAGAAAATGTTCTTG 994
BSNT_05637___ 995 ATGAAATCGGTATTAC-GTCTAACAAAAACGCGATTCCATATGATCCTGA 1043
|||||||||||||||| || .||||||||.||||||||.||||||||.||
BPUM_3335___g 995 ATGAAATCGGTATTACAGT-GAACAAAAATGCGATTCCTTATGATCCAGA 1043
BSNT_05637___ 1044 AAAACCTTTCGTAACAAGCGGCATCCGTCTTGGTACAGCTGCTGTAACCA 1093
|||||||||.||.|||||.||..|.|||.||||||||||.||.||.||.|
BPUM_3335___g 1044 AAAACCTTTTGTCACAAGTGGTGTACGTGTTGGTACAGCAGCAGTGACAA 1093
BSNT_05637___ 1094 GCCGCGGTTTTGACGGAGACGCATTAGAAGAAGTCGGTGCTATCATTGCG 1143
||||||||||.|||..|||.|||.|..|||||||||||.||||.||||||
BPUM_3335___g 1094 GCCGCGGTTTCGACCAAGAGGCAATGAAAGAAGTCGGTTCTATTATTGCG 1143
BSNT_05637___ 1144 CTTGCATTGAAAAACCACGAAGACGAAGGAAAACTTGAAGAAGCAAGACA 1193
|||||..|.|||.|.||.|||||.||||..|||.|.||||||||.|.|.|
BPUM_3335___g 1144 CTTGCTCTCAAACATCATGAAGATGAAGCGAAATTAGAAGAAGCGAAAAA 1193
BSNT_05637___ 1194 GCGTGTAGCTGCTCTGACTGATAAATTTCCTTTATATAAAGAATTAGATT 1243
|||||||.|||.||||||||.....||||||.|||||||.||||||||||
BPUM_3335___g 1194 GCGTGTATCTGATCTGACTGCCCGCTTTCCTCTATATAACGAATTAGATT 1243
BSNT_05637___ 1244 ATTAA 1248
|||||
BPUM_3335___g 1244 ATTAA 1248
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