Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05625 and BPUM_3328
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:13
# Commandline: needle
# -asequence dna-align/BSNT_05625___atpA.1.24716.seq
# -bsequence dna-align/BPUM_3328___atpA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05625___atpA-BPUM_3328___atpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05625___atpA-BPUM_3328___atpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05625___atpA
# 2: BPUM_3328___atpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1509
# Identity: 1244/1509 (82.4%)
# Similarity: 1244/1509 (82.4%)
# Gaps: 0/1509 ( 0.0%)
# Score: 5160.0
#
#
#=======================================
BSNT_05625___ 1 GTGAGCATCAAAGCTGAAGAGATTAGCACGCTGATAAAACAGCAAATACA 50
|||||.|||||||||||||||||||||.||||||||||.||||||||.||
BPUM_3328___a 1 GTGAGTATCAAAGCTGAAGAGATTAGCGCGCTGATAAAGCAGCAAATCCA 50
BSNT_05625___ 51 AAATTATCAATCTGATATTGAAGTTCAAGACGTAGGTACAGTCATCCAAG 100
|||.|||||||||||.||||||||..||||.||.||||||||||||||||
BPUM_3328___a 51 AAACTATCAATCTGAAATTGAAGTAAAAGATGTCGGTACAGTCATCCAAG 100
BSNT_05625___ 101 TCGGTGACGGTATTGCACGTGTGCACGGCCTTGACAACTGTATGGCCGGT 150
|.||.||||||||.||.|||||.||.||||||||||||..||||||.||.
BPUM_3328___a 101 TAGGGGACGGTATCGCGCGTGTACATGGCCTTGACAACATTATGGCAGGA 150
BSNT_05625___ 151 GAACTTGTCGAATTTTCAAACGGTGTTTTGGGTATGGCTCAAAACCTTGA 200
||.||.||.||.||.||.||||||||..||||||||||||||||||||||
BPUM_3328___a 151 GAGCTGGTTGAGTTCTCTAACGGTGTAATGGGTATGGCTCAAAACCTTGA 200
BSNT_05625___ 201 GGAATCAAACGTAGGTATCGTCATCTTAGGACCTTTCAGTGAGATCCGTG 250
|||.||.||||||||||||||.||.||||||||||.||..||.|||||.|
BPUM_3328___a 201 GGAGTCTAACGTAGGTATCGTTATTTTAGGACCTTACAAAGATATCCGCG 250
BSNT_05625___ 251 AGGGAGACGAAGTAAAAAGAACAGGCCGCATCATGGAGGTTCCTGTTGGT 300
|.||.|||||.||||||.|.|||||.||.||||||||||||||.||||||
BPUM_3328___a 251 AAGGTGACGACGTAAAACGTACAGGTCGTATCATGGAGGTTCCAGTTGGT 300
BSNT_05625___ 301 GAAGAGTTAATCGGCCGTATTGTAAATCCGTTAGGCCAGCCGGTAGACGG 350
||||||||||||||.||||||||.||.||..|.||.|||||.||.||.||
BPUM_3328___a 301 GAAGAGTTAATCGGACGTATTGTGAACCCACTTGGTCAGCCTGTTGATGG 350
BSNT_05625___ 351 ACTAGGCCCGATTCTGACAAGCAAAACTCGTCCGATCGAAAGCCCTGCAC 400
||||||.||.|||.|.|||||||||||||||||.||||||||....||||
BPUM_3328___a 351 ACTAGGTCCAATTTTAACAAGCAAAACTCGTCCAATCGAAAGTGAAGCAC 400
BSNT_05625___ 401 CAGGCGTTATGGACCGTAAATCAGTTCATGAACCGCTTCAAACCGGTATC 450
|||||||||||||.||||||||.||.|||||.|||||||||||.||.||.
BPUM_3328___a 401 CAGGCGTTATGGATCGTAAATCTGTACATGAGCCGCTTCAAACAGGGATT 450
BSNT_05625___ 451 AAAGCGATCGATGCACTGATTCCAATCGGCCGCGGCCAGCGTGAGCTGAT 500
|||||.||.|||||..|||||||||||||.|||||.||||||||..||||
BPUM_3328___a 451 AAAGCAATTGATGCCTTGATTCCAATCGGACGCGGACAGCGTGAATTGAT 500
BSNT_05625___ 501 CATCGGTGACCGTCAAACAGGTAAAACATCTGTTGCGATCGATGCGATTC 550
|||.||||||||||||||||||||||||||||||||.||.|||.||||.|
BPUM_3328___a 501 CATTGGTGACCGTCAAACAGGTAAAACATCTGTTGCAATTGATACGATCC 550
BSNT_05625___ 551 TGAACCAAAAAGACCAAGACATGATCTGCGTATATGTTGCGATCGGCCAA 600
|.|||||||||||.||||||||||||||..|.|||||.||||||||.|||
BPUM_3328___a 551 TAAACCAAAAAGATCAAGACATGATCTGTATTTATGTAGCGATCGGACAA 600
BSNT_05625___ 601 AAAGAATCAACAGTCCGCGGCGTAGTAGAAACATTGCGTAAACACGGCGC 650
||||||||||||||.||.||.||.||.||||||.|.|||||.||.||.||
BPUM_3328___a 601 AAAGAATCAACAGTTCGTGGTGTTGTTGAAACACTTCGTAAGCATGGTGC 650
BSNT_05625___ 651 GCTTGATTATACAATTGTTGTAACGGCGTCTGCGTCACAGCCGGCACCGC 700
|||||||||.||||||||.||.||.||.|||||.||||||||.||.||.|
BPUM_3328___a 651 GCTTGATTACACAATTGTAGTCACAGCTTCTGCATCACAGCCAGCTCCAC 700
BSNT_05625___ 701 TTCTGTACCTGGCACCGTATGCTGGGGTTACAATGGCAGAAGAATTTATG 750
|.||.|||||.||.||.|||||.||.||.||.||||..||.|||||.|||
BPUM_3328___a 701 TCCTTTACCTTGCTCCTTATGCAGGTGTAACGATGGGTGAGGAATTCATG 750
BSNT_05625___ 751 TACAGCGGCAAGCACGTTCTTGTTGTATACGATGATCTTTCTAAACAAGC 800
||.|.||||||||||||.|||||||||||.||||||||||||||||||||
BPUM_3328___a 751 TATAACGGCAAGCACGTCCTTGTTGTATATGATGATCTTTCTAAACAAGC 800
BSNT_05625___ 801 TGCCGCTTACCGTGAGCTGTCCTTGCTTCTTCGCCGTCCGCCAGGCCGTG 850
.||.||||||||||||||.||.||..|.|||||.|||||.|||||.||||
BPUM_3328___a 801 GGCAGCTTACCGTGAGCTTTCATTATTGCTTCGTCGTCCTCCAGGTCGTG 850
BSNT_05625___ 851 AAGCGTTCCCTGGGGATGTATTCTATCTTCATTCCCGTCTGCTTGAGCGT 900
|.||.||||||||.|||||.|||||||||||.||.|||.|..|.||||||
BPUM_3328___a 851 AGGCATTCCCTGGTGATGTTTTCTATCTTCACTCTCGTTTATTAGAGCGT 900
BSNT_05625___ 901 GCAGCAAAGCTTAGCGACGCGAAAGGCGCAGGATCAATTACAGCTCTGCC 950
|||||.||||||||.|||||.||.||.|..||.||.||.|||||..||||
BPUM_3328___a 901 GCAGCGAAGCTTAGTGACGCAAAGGGTGGCGGTTCTATCACAGCATTGCC 950
BSNT_05625___ 951 GTTCGTAGAAACACAAGCCGGAGATATCTCTGCTTATATTCCGACGAACG 1000
.|||||||||||.|||||.||.|||||||||||.|||||.||.||.||||
BPUM_3328___a 951 TTTCGTAGAAACGCAAGCTGGCGATATCTCTGCATATATCCCAACAAACG 1000
BSNT_05625___ 1001 TCATTTCCATCACCGACGGACAGATCTTCCTGCAATCTGATTTGTTCTTC 1050
|.|||||.|||||.||.||||||||||||.|.||||||||..|.||||||
BPUM_3328___a 1001 TTATTTCAATCACAGATGGACAGATCTTCTTACAATCTGACCTCTTCTTC 1050
BSNT_05625___ 1051 TCAGGCGTACGTCCAGCGATCAACGCCGGATTGTCTGTATCCCGTGTCGG 1100
|||||||||||||||||..|.|||||.||||||||||||||||||||.||
BPUM_3328___a 1051 TCAGGCGTACGTCCAGCAGTAAACGCAGGATTGTCTGTATCCCGTGTAGG 1100
BSNT_05625___ 1101 CGGCTCAGCGCAAATCAAAGCGATGAAAAAAGTATCAGGTACTTTGCGTC 1150
.||.||.||.||||||||||||||||||||.|||.|||||||..|.||||
BPUM_3328___a 1101 TGGTTCTGCACAAATCAAAGCGATGAAAAAGGTAGCAGGTACACTTCGTC 1150
BSNT_05625___ 1151 TTGACCTTGCGTCATACCGTGAGCTGGAAGCATTCGCTCAATTCGGTTCT 1200
|.||.|||||.||.||.||||||||.|||||.|||||||||||.||.|||
BPUM_3328___a 1151 TGGATCTTGCTTCTTATCGTGAGCTTGAAGCCTTCGCTCAATTTGGATCT 1200
BSNT_05625___ 1201 GACCTCGACCAAGCGACTCAGGCAAAACTGAACCGCGGTGCGCGTACAGT 1250
||..|.||||||||||||||.||||||.|.|||||.|||||..|.|||||
BPUM_3328___a 1201 GATTTAGACCAAGCGACTCAAGCAAAATTAAACCGTGGTGCTAGAACAGT 1250
BSNT_05625___ 1251 TGAAGTGCTGAAGCAGGATCTGAACAAGCCGCTTCCGGTTGAAAAGCAAG 1300
||||||.||.||.||.||..|||||||.||||||...||||||||.||||
BPUM_3328___a 1251 TGAAGTCCTAAAACAAGACTTGAACAAACCGCTTAAAGTTGAAAAACAAG 1300
BSNT_05625___ 1301 TAGCCATTCTTTATGCGCTGACAAAAGGATATCTCGATGATATTCCTGTG 1350
||||.|||||||||||.||.||||.||||||..|.||.|||.||.|.||.
BPUM_3328___a 1301 TAGCGATTCTTTATGCACTCACAAGAGGATACTTAGACGATGTTGCGGTT 1350
BSNT_05625___ 1351 GCGGATATCAGACGTTTTGAAGAAGAGTACTACATGTACCTTGACCAAAA 1400
||.|||.|||.||||||.||||..||||..|.|||||||.||||..||||
BPUM_3328___a 1351 GCTGATGTCAAACGTTTCGAAGCTGAGTTATTCATGTACATTGAAGAAAA 1400
BSNT_05625___ 1401 CCATAAAGACCTGCTTGACGGAATTGCGAAAACAGGAAACCTTCCTGCTG 1450
||||||||...||.|||||...||..|..|||||||||||.|.|||||||
BPUM_3328___a 1401 CCATAAAGGATTGTTTGACACGATCTCTCAAACAGGAAACATGCCTGCTG 1450
BSNT_05625___ 1451 ATGAAGACTTCAATGCTGCAATCGAAGGCTTCAAACGCACATTTGCACCA 1500
|||||||.|..|||.|.||||||||||||||.|||||.||.|||||||||
BPUM_3328___a 1451 ATGAAGAGTGGAATACAGCAATCGAAGGCTTTAAACGTACGTTTGCACCA 1500
BSNT_05625___ 1501 AGCAACTAA 1509
|||||||||
BPUM_3328___a 1501 AGCAACTAA 1509
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