Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05622 and BPUM_3326
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:13
# Commandline: needle
# -asequence dna-align/BSNT_05622___atpD.1.24716.seq
# -bsequence dna-align/BPUM_3326___atpD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05622___atpD-BPUM_3326___atpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05622___atpD-BPUM_3326___atpD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05622___atpD
# 2: BPUM_3326___atpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1423
# Identity: 1175/1423 (82.6%)
# Similarity: 1175/1423 (82.6%)
# Gaps: 2/1423 ( 0.1%)
# Score: 4871.0
#
#
#=======================================
BSNT_05622___ 1 ATGAAGAAAGGACGCGTTAGCCAGGTATTAGGACCGGTCGTCGACGTGCG 50
|||||.|.|||||||.|.||.|||.|..|.|||||.||.||.|||||.||
BPUM_3326___a 1 ATGAAAACAGGACGCATCAGTCAGATCATGGGACCAGTTGTAGACGTTCG 50
BSNT_05622___ 51 TTTTGAAGACGGTCACTTGCCTGAAATTTATAATGCGATTAAAATTTCAC 100
|||||||||.||||||||||||||.||||||||||||||.|.|.||||.|
BPUM_3326___a 51 TTTTGAAGATGGTCACTTGCCTGAGATTTATAATGCGATCAGAGTTTCGC 100
BSNT_05622___ 101 AGCCAGCTGCAAGTGAAAACGAAGTAGGTATTGATTTAACGCTTGAGGTC 150
|...|||.|.||||||||..|||||.|.|||.||.|||||..|.||.||.
BPUM_3326___a 101 ATAAAGCGGAAAGTGAAAGTGAAGTTGATATCGACTTAACTTTAGAAGTA 150
BSNT_05622___ 151 GCTCTTCATTTAGGTGATGATACAGTCCGTACAATCGCAATGGCATCTAC 200
||.||.|||||||||||.||||||||..|.||.|||||||||||.||.||
BPUM_3326___a 151 GCACTACATTTAGGTGACGATACAGTGAGAACCATCGCAATGGCTTCAAC 200
BSNT_05622___ 201 GGATGGTGTTCAGCGCGGTATGGAAGCTGTAGATACAGGAGCGCCAATCT 250
.||||||||..||||.|||||||||||||||||....|||...|||||.|
BPUM_3326___a 201 AGATGGTGTGAAGCGTGGTATGGAAGCTGTAGACCTTGGAAAACCAATTT 250
BSNT_05622___ 251 CAGTACCGGTTGGTGATGTAACACTTGGACGTGTATTTAACGTTCTCGGA 300
|||||||.||||||.|.||||||||||||||||||||.|||||.||.|||
BPUM_3326___a 251 CAGTACCAGTTGGTAACGTAACACTTGGACGTGTATTCAACGTACTGGGA 300
BSNT_05622___ 301 GAAAATATTGATTTGAATGAGCCGGTTCCTGCGGATGCGAAAAAGGATCC 350
||.||.||||||||..|||||||..||..||.|||.||..|||..|||||
BPUM_3326___a 301 GATAACATTGATTTAGATGAGCCACTTGGTGTGGAAGCTCAAAGAGATCC 350
BSNT_05622___ 351 GATTCACAGACAGGCGCCTTCATTCGATCAGCTTTCAACAGAAGTTGAAA 400
.||.||||||||.|||||||||||.|||||.|||||.|||||||||||||
BPUM_3326___a 351 AATCCACAGACAAGCGCCTTCATTTGATCAACTTTCTACAGAAGTTGAAA 400
BSNT_05622___ 401 TTCTTGAAACAGGTATTAAAGTTGTTGATTTGCTTGCTCCTTACATTAAG 450
||||||||||.|||||||||||||||||..|.||||||||||||||.|||
BPUM_3326___a 401 TTCTTGAAACGGGTATTAAAGTTGTTGACCTTCTTGCTCCTTACATCAAG 450
BSNT_05622___ 451 GGCGGTAAAATCGGATTGTTCGGTGGTGCCGGTGTAGGTAAAACCGTATT 500
|||||.||.|||||..|.||||||||.||.|||||||||||||||||..|
BPUM_3326___a 451 GGCGGAAAGATCGGTCTATTCGGTGGAGCTGGTGTAGGTAAAACCGTTCT 500
BSNT_05622___ 501 AATCCAGGAATTAATCAACAACATCGCGCAAGAGCACGGCGGTATCTCTG 550
.||.||.||||||||||||||||||||.|||||.|||||||||||.||||
BPUM_3326___a 501 GATTCAAGAATTAATCAACAACATCGCACAAGAACACGGCGGTATTTCTG 550
BSNT_05622___ 551 TATTCGCCGGCGTAGGAGAGCGTACTCGTGAAGGGAACGACCTTTTCTAC 600
|||||||.||.||.|||||||||||.||||||||.||||||||||.||||
BPUM_3326___a 551 TATTCGCTGGTGTTGGAGAGCGTACACGTGAAGGAAACGACCTTTACTAC 600
BSNT_05622___ 601 GAAATGAGTGACTCTGGCGTAATCAACAAAACAGCCATGGTATTCGGACA 650
|||||||..||.||||||||.|||.|.||||||||||||||.||||||||
BPUM_3326___a 601 GAAATGAAAGATTCTGGCGTTATCGAAAAAACAGCCATGGTCTTCGGACA 650
BSNT_05622___ 651 AATGAACGAGCCGCCGGGCGCACGTATGCGTGTTGCTTTGACAGGCCTTA 700
||||||||||||.||.||.|||||||||||||||||..|.||.||..|.|
BPUM_3326___a 651 AATGAACGAGCCACCAGGTGCACGTATGCGTGTTGCCCTAACTGGTTTGA 700
BSNT_05622___ 701 CAATGGCTGAGCACTTCCGTGATGTACAAGGACAGGACGTACTGTTCTTC 750
|||||||.|||||.||||||||||.||.|||.||.||||||.||||||||
BPUM_3326___a 701 CAATGGCAGAGCATTTCCGTGATGAACTAGGTCAAGACGTATTGTTCTTC 750
BSNT_05622___ 751 ATCGATAACATTTTCCGTTTCACACAAGCGGGTTCAGAGGTTTCAGCCCT 800
|||||||||||.|..||.||.||||||||.|||||.||.||.||||||||
BPUM_3326___a 751 ATCGATAACATCTATCGCTTTACACAAGCAGGTTCTGAAGTATCAGCCCT 800
BSNT_05622___ 801 TCTTGGCCGTATGCCTTCAGCGGTTGGTTATCAGCCGACGCTTGCAACTG 850
||||||.|||||||||||||||||.||||||||||||||.||||||||.|
BPUM_3326___a 801 TCTTGGACGTATGCCTTCAGCGGTAGGTTATCAGCCGACACTTGCAACAG 850
BSNT_05622___ 851 AGATGGGTCAGCTCCAAGAGCGTATCACGTCTACGAACGTTGGATCAGTT 900
|.|||||||||||.||||||||||||||||||||.|||||.|||||.|||
BPUM_3326___a 851 AAATGGGTCAGCTGCAAGAGCGTATCACGTCTACAAACGTAGGATCGGTT 900
BSNT_05622___ 901 ACATCTATCCAGGCGATCTACGTGCCTGCCGATGACTACACTGACCCGGC 950
|||||.||.||.||||||||.||.|||||.|||||||||||.||.||.||
BPUM_3326___a 901 ACATCGATTCAAGCGATCTATGTACCTGCGGATGACTACACGGATCCAGC 950
BSNT_05622___ 951 GCCGGCGACAACGTTCGCTCACTTGGATGCGACAACAAACCTTGAGCGTA 1000
.||.||.|||||||||||||||.|.|||||.||.||||||||||||||||
BPUM_3326___a 951 TCCAGCAACAACGTTCGCTCACCTTGATGCAACGACAAACCTTGAGCGTA 1000
BSNT_05622___ 1001 AATTAACTGAAATGGGTATTTACCCTGCGGTTGATCCGTTGGCATCTACA 1050
|..|.||||||||||||||.|||||.|||||||||||..|.||.||.|||
BPUM_3326___a 1001 AGCTGACTGAAATGGGTATCTACCCAGCGGTTGATCCTCTTGCTTCAACA 1050
BSNT_05622___ 1051 TCACGCGCCCTTGCTCCTGAAATTGTCGGAGAAGAGCATTATGCGGTTGC 1100
||.||.||.|||||.|||||.||.||.||.||||||||.|||||..||||
BPUM_3326___a 1051 TCTCGTGCACTTGCACCTGAGATCGTTGGCGAAGAGCACTATGCCATTGC 1100
BSNT_05622___ 1101 GCGTGAAGTACAGTCAACGCTTCAGCGTTACAAAGAGCTTCAAGATATCA 1150
|||||||||.|||..|||..|.||||||||.|||||.||.||||||||||
BPUM_3326___a 1101 GCGTGAAGTGCAGCAAACATTGCAGCGTTATAAAGAACTACAAGATATCA 1150
BSNT_05622___ 1151 TTGCGATTCTCGGTATGGATGAACTAGGCGAGGAAGACAAACTTGTCGTT 1200
||||.|||.|.||||||||||||.||...|||||.||.||.|||||.||.
BPUM_3326___a 1151 TTGCCATTTTAGGTATGGATGAATTATCAGAGGACGATAAGCTTGTGGTA 1200
BSNT_05622___ 1201 CACCGCGCACGCCGTATCCAGTTCTTCCTTTCTCAGAACTTCCACGTGGC 1250
|||.|.||.||.|||.|.||.||||||||.|||||.|||||||||||.||
BPUM_3326___a 1201 CACAGAGCGCGTCGTGTTCAATTCTTCCTATCTCAAAACTTCCACGTAGC 1250
BSNT_05622___ 1251 TGAACAGTTCACTGGACAAAAAGGTTCTTACGTGCCTGTAAAAGAGACGG 1300
.||.|||||||||||.||||||||||||||||||||..|.|||||.||.|
BPUM_3326___a 1251 AGAGCAGTTCACTGGCCAAAAAGGTTCTTACGTGCCATTGAAAGAAACTG 1300
BSNT_05622___ 1301 TACAAGGCTTCAAAGAAATCTTAGCCGGTAAATACGACCATCTTCCAGAA 1350
|..||||||||||.|||||||||.|.||||||||.||.||.|||||||||
BPUM_3326___a 1301 TTAAAGGCTTCAAGGAAATCTTATCTGGTAAATATGATCACCTTCCAGAA 1350
BSNT_05622___ 1351 GATGCGTTCCGTCTT-GTAGGCCGTATCGAAGAAGTTGTTGAGAAAGCAA 1399
|||||.||||| ||| ||.||.||.||.||||||||.|||||.|||||.|
BPUM_3326___a 1351 GATGCATTCCG-CTTAGTTGGACGCATTGAAGAAGTGGTTGAAAAAGCCA 1399
BSNT_05622___ 1400 AAGAAATGGGTGTAGAAGTTTAA 1422
||||.|||||||||||.|..|||
BPUM_3326___a 1400 AAGAGATGGGTGTAGAGGCCTAA 1422
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