Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05620 and BPUM_3325
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:13
# Commandline: needle
# -asequence dna-align/BSNT_05620___atpC.1.24716.seq
# -bsequence dna-align/BPUM_3325___atpC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05620___atpC-BPUM_3325___atpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05620___atpC-BPUM_3325___atpC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05620___atpC
# 2: BPUM_3325___atpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 412
# Identity: 301/412 (73.1%)
# Similarity: 301/412 (73.1%)
# Gaps: 29/412 ( 7.0%)
# Score: 1086.5
#
#
#=======================================
BSNT_05620___ 1 ATGAAGACCGTTAAAGTCAATATCGTTACTCCCGACGGCCCAGTATACGA 50
||||||||||||.|||||||||||||||||||||||||||||||.||..|
BPUM_3325___a 1 ATGAAGACCGTTCAAGTCAATATCGTTACTCCCGACGGCCCAGTGTATCA 50
BSNT_05620___ 51 TGCGGATATCGAAATGGTGAGTGTGAGAGCCGAAAGCGGCGATCTCGGTA 100
.||||||.|.||||||||.|||||.|||||.||||||||.||.||.||||
BPUM_3325___a 51 AGCGGATGTGGAAATGGTCAGTGTCAGAGCAGAAAGCGGTGAGCTTGGTA 100
BSNT_05620___ 101 TTTTGCCAGGCCATATTCCAACCGTGGCTCCTCTTAAAATCGGCGCTGTC 150
||||..|.|||||..||||||..||.|||||.||.||||||||.||.||.
BPUM_3325___a 101 TTTTAGCTGGCCACGTTCCAATGGTTGCTCCGCTAAAAATCGGTGCAGTT 150
BSNT_05620___ 151 CGTCTGAAAAAAGACGGG--CAGACTGAAATGGTTGCCGTCAGCGGCGGA 198
|| ||.||||.|.|..|| || ||||||.|||||||.||.||.||||||
BPUM_3325___a 151 CG-CTTAAAACATAGTGGATCA-ACTGAATTGGTTGCAGTAAGTGGCGGA 198
BSNT_05620___ 199 TTTGTCGAAGTCCGTCCTGATCAGGTCACCATCCTTGCCCAGGCTGCCGA 248
|||||.|||||.||.|||||.||.||.|||||.|||||.|||||.||.||
BPUM_3325___a 199 TTTGTTGAAGTTCGCCCTGAACAAGTAACCATTCTTGCTCAGGCCGCTGA 248
BSNT_05620___ 249 GACAGCGGAAGGCATC-GATAAA---------GAGCGCGCTGAAGCTGCA 288
.| |||| |||||| ||.||.||..||.|.||.
BPUM_3325___a 249 AA----------CATCAGATAAAGTTGATGTCGATCGTGCGAAATCAGCG 288
BSNT_05620___ 289 CGCCAGCGGGCGCAGGAGCGTTTGAATTCTCAATCAG-ATGATACTGACA 337
...|||||.||..|.||||.|||||| |.|.|.| ||||.|.|||..
BPUM_3325___a 289 AAACAGCGTGCTGAAGAGCATTTGAA----CCACCCGAATGAAAGTGATG 334
BSNT_05620___ 338 TTCGTCGGGCTGAGCTTGCGTTACAGCGGGCTTTGAACAGATTGGATGTA 387
|.||.|||||.||.||.||.|||.|.|||||.||.|||.|.||..|||||
BPUM_3325___a 335 TACGCCGGGCGGAACTCGCATTAAAACGGGCGTTAAACCGTTTAAATGTA 384
BSNT_05620___ 388 GCAGGGAAATAA 399
||||||||||||
BPUM_3325___a 385 GCAGGGAAATAA 396
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