Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05614 and BPUM_3320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_05614___spoIID.1.24716.seq
# -bsequence dna-align/BPUM_3320___spoIID.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05614___spoIID-BPUM_3320___spoIID.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05614___spoIID-BPUM_3320___spoIID.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05614___spoIID
# 2: BPUM_3320___spoIID
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1101
# Identity: 720/1101 (65.4%)
# Similarity: 720/1101 (65.4%)
# Gaps: 144/1101 (13.1%)
# Score: 2152.5
#
#
#=======================================
BSNT_05614___ 1 ATGAAA-CAAT----TCG-CAATCACACTATCCGTACTATGTGCAT--TG 42
|||||| |||| |.| |||||.||..| ||.||||| |.
BPUM_3320___s 1 ATGAAACCAATGATATGGACAATCGCAGGA--------ATATGCATCATT 42
BSNT_05614___ 43 ATTCTCTTGGTTCCCACACT-CTTG-GTT--ATACCATTCCAGCATAATA 88
|||.|..||.||||.||..| |||| ||| ..||..||| |
BPUM_3320___s 43 ATTTTAATGATTCCAACTTTACTTGTGTTGCCGACGTTTC---------A 83
BSNT_05614___ 89 AGG--AAGCGGGGGC----CAGCGTAGAATCAGAAAAGACAGCAGTCAGC 132
||| ||.|.|.||| ||||.| |.|||||...||.||.|||
BPUM_3320___s 84 AGGGAAACCAGAGGCAAGTCAGCAT-GTATCAGCGGAGCCATCAG----- 127
BSNT_05614___ 133 ACGAAACCAGCATCGAAAGGAGCAGAAACATTGAAAGC-ATCACCTGTTT 181
|.|||..||.|..|||.||..|||..|.|||| |||| ||||||.|||.
BPUM_3320___s 128 -CTAAAAAAGAAGTGAAGGGTACAGTCAAATTG-AAGCAATCACCCGTTG 175
BSNT_05614___ 182 CTATTCCCGTCTATCGAACCGCAAATCAATCCGTAGAAAACATTCCGCTT 231
||||.|||||||||||..|.||..||||....|||||||||||||| |||
BPUM_3320___s 176 CTATCCCCGTCTATCGTTCAGCTCATCAGCAGGTAGAAAACATTCC-CTT 224
BSNT_05614___ 232 -GAAGAGTATGTGATTGGAGTCGTCGCCTCCGAAATGCCGGCAACCTTTA 280
||||||||||||||.||.|||||.||.||.||||||||.||....|||.
BPUM_3320___s 225 AGAAGAGTATGTGATCGGTGTCGTAGCGTCTGAAATGCCAGCTGATTTTG 274
BSNT_05614___ 281 AACCTGAAGCACTGAAAGCCCAGGCGCTTGCCGCCAGAACATTTATTGTC 330
|....||||||||.||.||.|||||.||.||.||.|||||.|.|||.|||
BPUM_3320___s 275 AGATGGAAGCACTCAAGGCACAGGCTCTCGCTGCAAGAACGTATATCGTC 324
BSNT_05614___ 331 AGACTGATGGT-------------GTCAAATTCAGCGGTAGAAGCTCCTA 367
||||..|||.| ||||||| |.||.|
BPUM_3320___s 325 AGACAAATGATCATCGATAAGACCGTCAAAT-------------CACCAA 361
BSNT_05614___ 368 AAGGCTCACTGGTGGATGATACACAGATGTTCCAGGTGTATAAAAGCAAA 417
|.|||||.||.||.||||||||.||.||||||||.||||||||||.| ||
BPUM_3320___s 362 AGGGCTCTCTTGTAGATGATACCCAAATGTTCCAAGTGTATAAAAAC-AA 410
BSNT_05614___ 418 GC-GGAGCTGAAAAAACAGTGGGGCACAAGCTATGAGACA-----AAACT 461
|| |||.||.||.|||...|||||.| |||| |.||| |||.|
BPUM_3320___s 411 GCAGGAACTCAAGAAAATTTGGGGGA-AAGC----ATACAATTGGAAATT 455
BSNT_05614___ 462 GAAGAAAATCACAGATGCGGTAACCAGTACGCAAGGCAAAAT-----CTT 506
|||.|||.|.|||||.||.||..|.||.||.|||||.|||.| |||
BPUM_3320___s 456 GAAAAAAGTTACAGAAGCTGTCGCTAGCACACAAGGAAAAGTGCTCACTT 505
BSNT_05614___ 507 A--ACGTACAACAACCAGCCGATTGAAGCATCCTTTTTCTCCACAAGCAA 554
| ||| ||.||||| |||||.||.||.||.||.||.|||||.||
BPUM_3320___s 506 ATGACG---AAAAACCA----ATTGATGCCTCATTCTTTTCAACAAGTAA 548
BSNT_05614___ 555 CGGCTACACAGAGAATGCAGAAGCTTATTGGACAAGTGCTATCCCATATT 604
|||..|.||.||.|||||.|||||||||||||.||.||..||||||||||
BPUM_3320___s 549 CGGTAAAACGGAAAATGCCGAAGCTTATTGGAAAAATGAAATCCCATATT 598
BSNT_05614___ 605 TAAAAAGCGTCAAAAGCCCATGGGATAAAAAGTCTCCGAAATAT-AAGGC 653
|.|||||.|||.||||...||||||..||||.||.||.||||.| ||..|
BPUM_3320___s 599 TGAAAAGTGTCGAAAGTAAATGGGACGAAAAATCGCCAAAATTTCAAAAC 648
BSNT_05614___ 654 AACGAAAACCTTTACAGCGGCAGAATTTCAGCAAAAGCTTGGCGTCAAGC 703
|| |||||||.|..|||.....||||||||||||||..|.||.||.|.||
BPUM_3320___s 649 AA-GAAAACCATCCCAGTTAGTGAATTTCAGCAAAAATTAGGTGTGACGC 697
BSNT_05614___ 704 TGGATGGATCTA--------GCGCA-GTAGGGAAGAT--TACCGGCGA-- 740
| || ||.|| |||||..|||| || ||
BPUM_3320___s 698 T---------TACTCAACAGGCTCAGGTAGGACAGATAGTA-----GAAC 733
BSNT_05614___ 741 -GACACCGGGCCACCAGGTCGCAACTGCCGTCATTAACGGCAAGACGCTG 789
||||||.||..|.||.||.||.|..|.||||||.|||||.||.||.|||
BPUM_3320___s 734 GGACACCAGGAAATCAAGTAGCTAAAGTCGTCATAAACGGTAAAACACTG 783
BSNT_05614___ 790 AAAGGAAGAGACATACGTGAAAAGCTGGGTCTCAACTCCGCCGATTTTGA 839
|.|||.||||||||.|||||.....|.||.||..|.||.||.||.|||..
BPUM_3320___s 784 ACAGGCAGAGACATTCGTGAGTCATTAGGGCTTCATTCAGCAGACTTTAC 833
BSNT_05614___ 840 ATGGAAGCGAAATGG--AGACACAATTA--CAGTCACGACGAGAGGATTT 885
||||.|.|||.|.|| || |||.|| || |.|||||.|.|||.|.|
BPUM_3320___s 834 ATGGGAACGACAGGGCCAG---CAAATAATCA-TTACGACAAAAGGGTAT 879
BSNT_05614___ 886 GGCCACGGTGTGGGGATGAGCCAATACGGAGCGAATTTTATGGCCAAAG- 934
|||||.|||||.||.|||||.||.||.||.|||.|||.||||| ||.||
BPUM_3320___s 880 GGCCATGGTGTTGGAATGAGTCAGTATGGTGCGCATTATATGG-CACAGT 928
BSNT_05614___ 935 AAGGCAAAACGGTTGATGACATTGTAAAGTACTATTACCAAGGCACACAA 984
.|||.||||..||.||||..||.||.||..|.|||||..||||.|..|||
BPUM_3320___s 929 CAGGAAAAAAAGTGGATGCTATCGTGAAACATTATTATAAAGGGATTCAA 978
BSNT_05614___ 985 ATTTCTGAGGCAGATG--CGTTTT-TGAATAAATATATGGCGAAAAAGTA 1031
|| |||..|||.|| |||||| |.||.|..||||||||||||||.||
BPUM_3320___s 979 AT---TGAATCAGCTGATCGTTTTCTTAACACGTATATGGCGAAAAAATA 1025
BSNT_05614___ 1032 G 1032
.
BPUM_3320___s 1026 A 1026
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