Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05611 and BPUM_3319
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_05611___ywmC.1.24716.seq
# -bsequence dna-align/BPUM_3319___ywmC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05611___ywmC-BPUM_3319___ywmC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05611___ywmC-BPUM_3319___ywmC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05611___ywmC
# 2: BPUM_3319___ywmC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 782
# Identity: 469/782 (60.0%)
# Similarity: 469/782 (60.0%)
# Gaps: 178/782 (22.8%)
# Score: 1203.0
#
#
#=======================================
BSNT_05611___ 1 ATGA-----AGAAAAG-ACTTTCACTGATCA---------TGATGACAGG 35
|||| |.||||| |.||.||||..|.| |..|||||..
BPUM_3319___y 1 ATGATGTTGAAAAAAGTATTTACACTCGTAACCTTAGCTGTATTGACATT 50
BSNT_05611___ 36 ATTGCTTTTTGGAT-TAACTTCACCTGCTTTTGC---AGC--------TG 73
|| ||.|.|..|| | |||||||.|..||||| ||| |.
BPUM_3319___y 51 AT--CTATGTCAATCT--CTTCACCAGTATTTGCAAAAGCATCTACAGTC 96
BSNT_05611___ 74 AAAAGACAGAA-ACGGAGGCTAAAGCGCCGGCGAACGTGGCGGTCTTGCT 122
||||.|||.|| |..||.| ||| || ||..|..||||.||
BPUM_3319___y 97 AAAAAACATAACAAAGATG-TAA---------GA--GTCACCATCTTACT 134
BSNT_05611___ 123 TGATGCCAGCGGAAGTATGGC--GAAAAGAATAGATGGTGTATCTAAATT 170
||||||.||.|||||.||||| |||||| ||||.||.|.|...|||||
BPUM_3319___y 135 TGATGCAAGTGGAAGCATGGCAAGAAAAG--TAGAGGGAGAACGCAAATT 182
BSNT_05611___ 171 T-AATTCAGCCAAAAAAGA--AATTTCAAAGTTTGC-GAGCTCATTGCCA 216
| |..|| ||.|||.|||| .|||| ||.||||| .|| |||.|.|||
BPUM_3319___y 183 TGACCTC-GCTAAACAAGAGGTATTT--AAATTTGCTCAG-TCACTTCCA 228
BSNT_05611___ 217 GAAGGAACTCAGGTGAAA-----ATGAGCGTGTTTGGCTCTGAAGGAAAC 261
.||| || |.|.||| ||||||.||||||||||||||||||||
BPUM_3319___y 229 AAAG--AC---GCTAAAATTCGTATGAGCTTGTTTGGCTCTGAAGGAAAC 273
BSNT_05611___ 262 AATAAAAATTCCGGAAAAGTTCAGTCATGTGAAGCCATTCGCAACGTATA 311
||.||||||||.||.||||.|||.||||||||||.||||.|...|||.||
BPUM_3319___y 274 AACAAAAATTCGGGTAAAGCTCAATCATGTGAAGTCATTAGAGGCGTTTA 323
BSNT_05611___ 312 CGGCTTCCAAAGCTTTAACG----AGCAAAGTTTCCTCAATTCTCTCAAT 357
.|||.| |.|||.|| ||| || ||||.|| |.||..||||..|.
BPUM_3319___y 324 TGGCGT--ACAGCCTT-ACGAAAAAG-AAAGCTT--TGAAAACTCTTTAA 367
BSNT_05611___ 358 AC--AATTGGGCCGACTGGCTGGACGCCAATTGC---------------- 389
|| |.|||||||.|.|||||||||.||.|||||
BPUM_3319___y 368 ACGGACTTGGGCCAAATGGCTGGACACCGATTGCTCGTGCTCTTGAACAT 417
BSNT_05611___ 390 -CAAAGCGCTGAACGAGGCGAAATCTTCTTTTGACCAGCTTGATGCAAAA 438
|||||| .|||| || |||.||||||.|| ||
BPUM_3319___y 418 GCAAAGC---AAACG----GA----------TGAACAGCTTAAT----AA 446
BSNT_05611___ 439 GGGGAAAAA----GTGGTGTATCTGTTGACAGACGGTGAGGAAACGTGCG 484
.||.|.||| .|.|||||.||..|.||.||.||.||.|||||.||.|
BPUM_3319___y 447 TGGTACAAAACATATTGTGTACCTCATCACTGATGGCGAAGAAACTTGTG 496
BSNT_05611___ 485 GAGGAAACCCGATTAAAA-CAGCAAAGGAACTGCA------AAAAGAGAA 527
|.|||.|.|| |.||||| .||||||.|||.|||| .||||.|
BPUM_3319___y 497 GCGGAGATCC-AGTAAAAGTAGCAAAAGAATTGCATAACTCTAAAGGG-- 543
BSNT_05611___ 528 TATC-ACTGTT---AATGTGATCGGCTTTGATTATAAAGAGGGATACAAA 573
|| |||||| |||||.||.||.||.||.|.|||.||.||.||..||
BPUM_3319___y 544 --TCGACTGTTGTGAATGTCATTGGATTAGACTTTAATGATGGCTATGAA 591
BSNT_05611___ 574 GGCCAGCTGAACGCAA-TTGCGAAAGTAGGCGGC-GGTGAATACTTCCCG 621
||.|| .|.||.|||| |.||.||| || |||.|| |
BPUM_3319___y 592 GGTCA-ATTAAAGCAAGTAGCTAAA-------GCTGGTAAA--------G 625
BSNT_05611___ 622 G---TTTATACCCAAAAAG--ATGTTGAGAAAAT------TTTCAC--TC 658
| ||..||||.|..||| .||.|.|..|||| |.|| | ||
BPUM_3319___y 626 GCCATTACTACCAAGCAAGCACTGGTAAAGAAATGGGTTCTATC-CTGTC 674
BSNT_05611___ 659 AGC--AATCACTAATGTTATCTA----AATAA 684
||| |||||.||| |.||| |||||
BPUM_3319___y 675 AGCAGAATCATTAA----AACTACACGAATAA 702
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