Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05581 and BPUM_3303
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_05581___ywnH.1.24716.seq
# -bsequence dna-align/BPUM_3303___ywnH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05581___ywnH-BPUM_3303___ywnH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05581___ywnH-BPUM_3303___ywnH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05581___ywnH
# 2: BPUM_3303___ywnH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 531
# Identity: 343/531 (64.6%)
# Similarity: 343/531 (64.6%)
# Gaps: 69/531 (13.0%)
# Score: 1006.5
#
#
#=======================================
BSNT_05581___ 1 ATGAACATGACATT---GCGCCTTGCTGAACA-TAGA-GACTTGGAGGCT 45
.|||| .||.|| .||..|.|| |||| .||| |||.|..|.||.
BPUM_3303___y 1 GTGAA---AACTTTCAACCGTATAGC--AACAGAAGATGACCTCAAAGCA 45
BSNT_05581___ 46 GTTGTGGCGATTTATAATTCAACGATTGCTTCTCGAATGGTAACAGCCGA 95
.|.||.|..|||||.|||||.||.||||||||..||...|||||.|||||
BPUM_3303___y 46 ATCGTTGATATTTACAATTCGACCATTGCTTCAAGAGAAGTAACCGCCGA 95
BSNT_05581___ 96 TACCGAACCGGTAACTCCTGAAGACCGGATGGAATGGTTTTTAGGA--CA 143
|||.|||||.||..|...|||||||||...|.|||||||||| || ||
BPUM_3303___y 96 TACAGAACCAGTTTCAGTTGAAGACCGCCGGCAATGGTTTTT--GAATCA 143
BSNT_05581___ 144 TACAGAGGCACGTCCGCTCTATGTGGCCGAGGACGAAAACGGA-----AA 188
|.|||||..|.|.||.|||||||| ||||||||| |.
BPUM_3303___y 144 TTCAGAGAAAAGACCTCTCTATGT----------GAAAACGGATGAGGAT 183
BSNT_05581___ 189 CGTC-----GCTGCCTGGATCAGCTTTGAAACATTTTATGGAAGGCCAGC 233
.||| ..||.||||.|||||||||||||.|||||||||||.||.||
BPUM_3303___y 184 GGTCATATTTATGGCTGGCTCAGCTTTGAAACCTTTTATGGAAGACCTGC 233
BSNT_05581___ 234 CTATAATAAAACAGCGGAGGTCAGCATATACATTGACGAAGCATGCCGCG 283
|||.||...|||.|..||..|.||.||.|||.|..||.|||..|.|||.|
BPUM_3303___y 234 CTACAACGGAACCGTTGAAATGAGTATTTACTTAAACCAAGACTACCGAG 283
BSNT_05581___ 284 GCAAAGGCGTTGGATCATATTTGCTTCAGGAAGCGCTCCGCATTGCGCCG 333
|.|||||..|.||.|||..|||..|.||.||.|| |||||.|..|
BPUM_3303___y 284 GAAAAGGATTAGGGTCACTTTTTTTACAAGAGGC------CATTGAGTTG 327
BSNT_05581___ 334 G-ATCTT-----GGCATCCGCTCAC-TTA-TGGCCTTCATTTTCGGGCAT 375
| |.||| |||||.|| .|| ||| |.|||||.|||||||||||
BPUM_3303___y 328 GCACCTTCACTAGGCATTCG--AACGTTACTCGCCTTTATTTTCGGGCA- 374
BSNT_05581___ 376 AATAAACCAAGCCTGAAGC-------TGTTTGAAAAGCACGGGTTTGCAG 418
.|||.||||| ||| |.|||.||||||||||.|||| ||
BPUM_3303___y 375 ---CAACGAAGCC---AGCATTCGATTATTTAAAAAGCACGGCTTTG-AG 417
BSNT_05581___ 419 A-ATGGGGACTATTCCCCGGCATCGCCGAAATGGACGGGAAAAGATACGA 467
| ||||||.|...|.||..|||||||.||.||||||||.|..||||||||
BPUM_3303___y 418 ACATGGGGTCACCTGCCACGCATCGCAGAGATGGACGGCAGCAGATACGA 467
BSNT_05581___ 468 TTTAAAAATTTTAGGGAGAGAGCTTTCATGA 498
||||.|.|||.||||.|.|||..|.|.|
BPUM_3303___y 468 TTTAGACATTCTAGGAAAAGAATTATAA--- 495
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