Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05580 and BPUM_3302
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_05580___spoIIQ.1.24716.seq
# -bsequence dna-align/BPUM_3302___spoIIQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05580___spoIIQ-BPUM_3302___spoIIQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05580___spoIIQ-BPUM_3302___spoIIQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05580___spoIIQ
# 2: BPUM_3302___spoIIQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 925
# Identity: 660/925 (71.4%)
# Similarity: 660/925 (71.4%)
# Gaps: 80/925 ( 8.6%)
# Score: 2254.0
#
#
#=======================================
BSNT_05580___ 1 ATGAGAGAGGAAGAAAAGAAA---ACTTCTCAAGTCAAAAAACTTCAGCA 47
||||||||||||||||||||| |||||..||.|||.||||.|||||||
BPUM_3302___s 1 ATGAGAGAGGAAGAAAAGAAACGTACTTCCAAAATCACAAAAGTTCAGCA 50
BSNT_05580___ 48 GTTTTTTCGTAAACGCTGGGTGTTCCCTGCAATTTACTTAGTCAGTGCGG 97
.|||||.|||||.||||||||.|||||||||||||||||.|||||.||.|
BPUM_3302___s 51 ATTTTTCCGTAAGCGCTGGGTATTCCCTGCAATTTACTTGGTCAGCGCAG 100
BSNT_05580___ 98 CCGTCATTTTAACAGCTGTCCTTTGGTATCAATCAGTATCAAATGATGAG 147
|.|||.|.||||||||.||.||||||||||||.|.||||||||.|||
BPUM_3302___s 101 CGGTCGTGTTAACAGCCGTTCTTTGGTATCAAGCTGTATCAAAAGAT--- 147
BSNT_05580___ 148 GTAAAGGATCAGTTGGCTGATAACGGCGGAAACTCCGCATATGACAACAA 197
||.||.||.||..|..||||| ||||| .|..|.|.|.|||.||
BPUM_3302___s 148 GTGAAAGACCAACTATCTGAT------GGAAA--TCAAACAGGGCAAGAA 189
BSNT_05580___ 198 C-----GACGATGCAGTTGAAGTAGGAAAGTCAATGGAAAATGTCGCAAT 242
| ||.|||||.||||||||.||||||.||||.||||||||.||.||
BPUM_3302___s 190 CAGCGTGATGATGCCGTTGAAGTTGGAAAGCCAATTGAAAATGTTGCCAT 239
BSNT_05580___ 243 GCCAGTTGTTGATTCTGAAAACGTTTCTGTTGTGAAAAAGTTCTATGAAA 292
||||||.....|||||||.||.||||||||.||||||||||||||||||.
BPUM_3302___s 240 GCCAGTCCAGAATTCTGATAATGTTTCTGTCGTGAAAAAGTTCTATGAAG 289
BSNT_05580___ 293 CCGATGCCG--CAAAAGAAGAGAAAGAAGCAGCACTCGTTACCTATAATA 340
|.|||||.| |||| ||||.||||||||||||||.||.|.||||||||
BPUM_3302___s 290 CAGATGCTGATCAAA--AAGAAAAAGAAGCAGCACTTGTAAACTATAATA 337
BSNT_05580___ 341 ACACGTACAGCCTAAGCAAAGGAATTGA-CTTAGCTGAGAAAGACGGAAA 389
||||.||.|.|.|.||||||||.||||| ||| ||.||.|||||.||.||
BPUM_3302___s 338 ACACCTATACCTTGAGCAAAGGTATTGATCTT-GCAGACAAAGATGGCAA 386
BSNT_05580___ 390 AGATTTCGATGTCTCTGCTTCTCTGAGCGGTACGGTTGTTAAAGCTGAAA 439
||..||.||||||.|.|||.||||.||.||.||.||.|||.||||..|||
BPUM_3302___s 387 AGTGTTTGATGTCACAGCTGCTCTTAGTGGAACAGTGGTTCAAGCGAAAA 436
BSNT_05580___ 440 AAGATCCAGTGCTGGGATATGTTGTGGAAGTAGAACATGCCGACGGTTTA 489
||||||||||.||.||..||||.||.|||.|.|||||||..||.||.|||
BPUM_3302___s 437 AAGATCCAGTTCTCGGTCATGTCGTTGAAATTGAACATGAAGATGGATTA 486
BSNT_05580___ 490 TCGACTGTGTATCAATCTCTTTCCGAAGTAAGCGTTGAGCAAGGTGACAA 539
||||||||.||.|||||..|.||..||||.||.|||.|..||||.||..|
BPUM_3302___s 487 TCGACTGTTTACCAATCGTTGTCACAAGTGAGTGTTAAAGAAGGCGATGA 536
BSNT_05580___ 540 AGTAAAACAAAATCAAGTGATCGGAAAATCTGGCAAGAACCTTTACAGTG 589
|||.||.||||||.|.||.|||||....|||||.||.||.|||||..|||
BPUM_3302___s 537 AGTGAAGCAAAATGATGTCATCGGTGCTTCTGGTAAAAATCTTTATGGTG 586
BSNT_05580___ 590 AAGACAGCGGAAACCACGTACACTTTGAAATCCGTAAAGATGGGGTCGCA 639
..||.|||||.|||||.||.||.||||||||.||||..||.||..|.||.
BPUM_3302___s 587 CTGAAAGCGGCAACCATGTGCATTTTGAAATTCGTATGGAAGGTTTAGCG 636
BSNT_05580___ 640 ATGAATCCGTTAAACTTTATGGACAAACCAGTTTCTTCTATTGAAAAAGC 689
.|.|||||..|.|.|||.||.|||||.||.|||||..||||||||||.||
BPUM_3302___s 637 CTTAATCCACTTAGCTTCATTGACAAGCCTGTTTCAACTATTGAAAAGGC 686
BSNT_05580___ 690 AGCAGC------TG-CTGAAGA---AAAAG---CTGC-CACCCAAGAAAC 725
.||| | || |.||||| ||||| |||| ||.|||| ||.|
BPUM_3302___s 687 CGCA-CAAGAAGTGACGGAAGAAGCAAAAGAACCTGCTCAGCCAA-AAGC 734
BSNT_05580___ 726 AGAAGAATCAATTCAGCAATCTTCCG----AGAAAAAGGACGGATCAA-- 769
.||.|||..||...||.||.||.|.| |||.|| |.||||
BPUM_3302___s 735 TGATGAAAAAACGAAGGAACCTGCTGCTGAAGATAA------GGTCAAAG 778
BSNT_05580___ 770 ------CTGAAAAAGGAACAGAAGAAAAATCCGGTGAGAAAAAGGA---- 809
|||.|.||..|.|.||||||||.||.|.|||| ||..|||
BPUM_3302___s 779 AGCCTGCTGGAGAAAAATCTGAAGAAAAGTCTGATGAG-AAGGGGAAATC 827
BSNT_05580___ 810 ---TGATTCAACTGACAAA----TCTGGTTCC---AAAGAAAGCAG-CAC 848
||| |||| || ||| ||||.|||| |||||.||||| ||
BPUM_3302___s 828 CTCTGA-TCAA--GA-AAAGTCTTCTGATTCCTCTAAAGACAGCAGTCA- 872
BSNT_05580___ 849 AACAGAAGACACTGAACAGTCTTAA 873
|.|.|||||.||..||||.||||||
BPUM_3302___s 873 ATCTGAAGAAACAAAACAATCTTAA 897
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