Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05574 and BPUM_3300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_05574___nrgA.1.24716.seq
# -bsequence dna-align/BPUM_3300___nrgA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05574___nrgA-BPUM_3300___nrgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05574___nrgA-BPUM_3300___nrgA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05574___nrgA
# 2: BPUM_3300___nrgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1228
# Identity: 924/1228 (75.2%)
# Similarity: 924/1228 (75.2%)
# Gaps: 32/1228 ( 2.6%)
# Score: 3374.0
#
#
#=======================================
BSNT_05574___ 1 ATGCAAATGGGCGATACAGTTTTTATGTTCTTTTGCGCTTTACTCGTGTG 50
|||||||||||.||||||||.|||||||||||.|||||..||||||||||
BPUM_3300___n 1 ATGCAAATGGGTGATACAGTATTTATGTTCTTCTGCGCACTACTCGTGTG 50
BSNT_05574___ 51 GCTGATGACCCCGGGATTAGCGTTATTTTATGGAGGAATGGTAAAGAGCA 100
|.|.|||||.|||||.|||||.|||||.||.||||||.|.||.|..||.|
BPUM_3300___n 51 GTTAATGACACCGGGTTTAGCCTTATTCTACGGAGGACTCGTGAGAAGTA 100
BSNT_05574___ 101 AAAATGTGCTGAGTACTGCCATGCACAGTTTCTCTTCCATTGCCATCGTT 150
||||.||..|.|||||..||||||||||.||..||||..|.||.||||||
BPUM_3300___n 101 AAAACGTCTTAAGTACAACCATGCACAGCTTAACTTCACTAGCGATCGTT 150
BSNT_05574___ 151 TCCATCGTTTGGGTGCTGTTCGGATATACACTT-GCCTTCGCACCAGGCA 199
||.|||||.|||.|..||||.||.|||.| ||| ||.|||||||||||||
BPUM_3300___n 151 TCTATCGTATGGATCTTGTTTGGCTATTC-CTTAGCTTTCGCACCAGGCA 199
BSNT_05574___ 200 ATTCAATCATCGGCGGGCTGGAGTGGGCCGGCCTCAAAGGGGTCGGATTT 249
||.||...|||||.||..|.||.||||..||.||.|||||.||.||.|||
BPUM_3300___n 200 ATGCATGGATCGGAGGCTTAGACTGGGTTGGACTAAAAGGCGTTGGCTTT 249
BSNT_05574___ 250 GATCCGGGAGATTACAGCGATACCATCCCCCACTCGTTATTTATGATGTT 299
||.||.||....|||||.||.||.|||||.||.||.||.|||||||||||
BPUM_3300___n 250 GAACCTGGTTCCTACAGTGAGACGATCCCACATTCATTGTTTATGATGTT 299
BSNT_05574___ 300 CCAAATGACGTTCGCCGTTCTGACTACAGCGATTATTTCCGGGGCTTTCG 349
|||||||||.||.|||||..|.||.|||||.||.|||||.||.||.||.|
BPUM_3300___n 300 CCAAATGACCTTTGCCGTCTTAACAACAGCCATCATTTCAGGTGCCTTTG 349
BSNT_05574___ 350 CAGAGCGGAT--GCGATTCGGCGCTTTTC--TTTTATTCTCGGTTTTATG 395
|.||.||.|| ||.|.||.|||.|..|| .||||..||| .|.||
BPUM_3300___n 350 CTGAACGAATTCGCTACTCAGCGGTCGTCGTGTTTACACTC----CTTTG 395
BSNT_05574___ 396 GGCCTCTTTGGTTTACACACCCGTAGCGCACTGGGTATGGGGCGGCGGCT 445
||.|.|.||.||.|||.|.||.||.||.||||||||||||||.|||||.|
BPUM_3300___n 396 GGTCACATTTGTATACGCGCCAGTCGCACACTGGGTATGGGGAGGCGGTT 445
BSNT_05574___ 446 GGATCGGCCAGCTTGGAGCGCTCGATTTCGCCGGCGGCAATGTTGTTCAT 495
||||.|||.|..|.||.||||||||.||.||.||.||.||.||.|||||.
BPUM_3300___n 446 GGATTGGCGAAATGGGTGCGCTCGACTTTGCTGGAGGAAACGTGGTTCAC 495
BSNT_05574___ 496 ATTTCCTCCGGTGTGGCAGGACTTGTTCTTGCCATTGTGCTAGGCAAACG 545
|||||.||.|||||||||||.||.|||.|.||.||||||||.||.||.||
BPUM_3300___n 496 ATTTCATCAGGTGTGGCAGGTCTAGTTGTAGCGATTGTGCTCGGGAAGCG 545
BSNT_05574___ 546 GAAAGA--CGGCACAGCGTCTTCTCCGCATAACCTCATTTACAC-CTTCT 592
.||||| |.||| ||| |||||.||.||.||..|.|||||.|| |||||
BPUM_3300___n 546 TAAAGAAGCAGCA-AGC-TCTTCCCCTCACAATTTGATTTATACTCTTCT 593
BSNT_05574___ 593 TAGGAGGAGCTTTGATTTGGTTCGGCTGGTTCGGCTTTAACGTCGGCAGC 642
| ||.||||||.|.|||||||||||.|||||.|||||||||||.||.||.
BPUM_3300___n 594 T-GGCGGAGCTGTCATTTGGTTCGGATGGTTTGGCTTTAACGTTGGAAGT 642
BSNT_05574___ 643 GCTTTGACTTTAGATGGTGTAGCCATGTACGCGTTCATCAACACAAACAC 692
||..|.||.|||||..||||.||||||||.||.||.||.|||||.||.||
BPUM_3300___n 643 GCCCTTACCTTAGACAGTGTCGCCATGTATGCCTTTATTAACACCAATAC 692
BSNT_05574___ 693 CGCGGCTGCAGCCGGGATCGCCGGCTGGATCGTAGTAGAATGGATCATTA 742
.||.||.||.||.||.|||..|||||||.|..||||.||.|||||.||.|
BPUM_3300___n 693 TGCTGCGGCTGCGGGAATCATCGGCTGGCTGTTAGTCGAGTGGATGATCA 742
BSNT_05574___ 743 ACAAAAAACCGACAATGCTCGGAGCGGTATCTGGCGCAATCGCCGGGCTT 792
|||||||||||||.||||||||.||..|||||||.|..|||||.||.|||
BPUM_3300___n 743 ACAAAAAACCGACCATGCTCGGCGCAATATCTGGAGGCATCGCAGGTCTT 792
BSNT_05574___ 793 GTCGCCATTACGCCGGCTGCCGGATTTGTCACACCGTTCGCTTCCATTAT 842
||.||.|||||.||.||.||.||.|||||||||||.||.|||||.|||||
BPUM_3300___n 793 GTGGCAATTACACCTGCCGCAGGTTTTGTCACACCTTTTGCTTCTATTAT 842
BSNT_05574___ 843 TATCGGCATCATCGGCGG-AGCTGTTTGTTTCTGGGGAGTATTCTCGCTT 891
||||||.||.|||||||| |.| ||.||||||||||||||.||||||||.
BPUM_3300___n 843 TATCGGAATTATCGGCGGCATC-GTATGTTTCTGGGGAGTTTTCTCGCTC 891
BSNT_05574___ 892 AAAAAGAAATTCGGATACGACGACGCGCTTGACGCCTTTGGCCTGCACGG 941
|||...|||||.||.||.|||||.||.||.||.||.||.||.||.|||||
BPUM_3300___n 892 AAAGCCAAATTTGGCTATGACGATGCACTAGATGCATTCGGACTTCACGG 941
BSNT_05574___ 942 GATCGGCGGCACATGGGGCGGAATCGCAACAGGATTATTCGCAACAACCT 991
.||.|||||.||.|||||.||.||.||||||||..|.|||||||||||||
BPUM_3300___n 942 AATTGGCGGGACTTGGGGAGGTATTGCAACAGGGCTTTTCGCAACAACCT 991
BSNT_05574___ 992 CTGTTAACTCAGCGGGCGCAG---ATGGGTTATTTTACGGTGATGCAAGC 1038
||||.|| .|..||||.|| ||||.||||||||.||.|||.|.|||
BPUM_3300___n 992 CTGTCAA---TGACGGCGGAGCCAATGGCTTATTTTATGGAGATCCTAGC 1038
BSNT_05574___ 1039 TTAATCTGGAAACAAATCGTCGCCATCGCCGCCACTTATGTTTTTGTATT 1088
|||.|.|||||.|||.|||||||.||.|..|||||.||||.|||||||..
BPUM_3300___n 1039 TTACTTTGGAAGCAAGTCGTCGCTATTGTGGCCACCTATGCTTTTGTAGC 1088
BSNT_05574___ 1089 TATTGTCACTTTCGTTATTATTAAATTTGTAAGCCTCTTCCTTCCCCTTC 1138
|.||||.||.|.|||.||.||.|||.|.||.|..||||||.||....|||
BPUM_3300___n 1089 TGTTGTGACATACGTGATCATCAAAGTGGTGAATCTCTTCTTTAAGATTC 1138
BSNT_05574___ 1139 GCGCAACCGAAGAAGAAGAGTCACTTGGGCTTGACTTAACGATGCACGGG 1188
|||||||||||||||||||.|||.|.||.|||||.|||||.|||||.|||
BPUM_3300___n 1139 GCGCAACCGAAGAAGAAGAATCAGTGGGTCTTGATTTAACCATGCATGGG 1188
BSNT_05574___ 1189 GAAAAAGCATATCAAGATTCTATGTGA- 1215
||||||||.|||||||||| |
BPUM_3300___n 1189 GAAAAAGCTTATCAAGATT-------AA 1209
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