Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05561 and BPUM_3291

See Amino acid alignment / Visit BSNT_05561 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:10
# Commandline: needle
#    -asequence dna-align/BSNT_05561___spoIIID.1.24716.seq
#    -bsequence dna-align/BPUM_3291___spoIIID.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05561___spoIIID-BPUM_3291___spoIIID.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05561___spoIIID-BPUM_3291___spoIIID.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05561___spoIIID
# 2: BPUM_3291___spoIIID
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 282
# Identity:     238/282 (84.4%)
# Similarity:   238/282 (84.4%)
# Gaps:           3/282 ( 1.1%)
# Score: 1015.0
# 
#
#=======================================

BSNT_05561___      1 GTGCACGATTACATCAAAGAGCGAACAATCAAGATAGGGAAGTACATCGT     50
                     ||||||||||||||||||||||||||||||||||||||.|||||.|||||
BPUM_3291___s      1 GTGCACGATTACATCAAAGAGCGAACAATCAAGATAGGTAAGTATATCGT     50

BSNT_05561___     51 GGAGACAAAGAAAACCGTTCGTGTCATTGCGAAGGAATTTGGTGTTTCCA    100
                     ||||||||||||||||||||||||.||||||||.||||||||.||.||.|
BPUM_3291___s     51 GGAGACAAAGAAAACCGTTCGTGTAATTGCGAAAGAATTTGGAGTCTCTA    100

BSNT_05561___    101 AAAGTACAGTACACAAGGATTTAACAGAGCGTCTGCCTGAAATTAACCCC    150
                     |||||||.||||||||||||.|||||||..|.|||||.||||||||.||.
BPUM_3291___s    101 AAAGTACTGTACACAAGGATCTAACAGAAAGACTGCCAGAAATTAATCCA    150

BSNT_05561___    151 GACTTGGCAAACGAAGTGAAAGAAATACTCGATTATCATAAATCCATCAG    200
                     ||..||||.||.||||||||.||.|||||.||||||||||||||.|||.|
BPUM_3291___s    151 GATCTGGCTAATGAAGTGAAGGAGATACTGGATTATCATAAATCAATCCG    200

BSNT_05561___    201 GCATTTAAGAGGAGGAGAAGCGACAAAGCTCAAATATAAAAAAGATGAAA    250
                     .||.||..|||||||||||||.||.||..|.||.|||||||||||.||||
BPUM_3291___s    201 CCACTTGCGAGGAGGAGAAGCCACTAAATTAAAGTATAAAAAAGAAGAAA    250

BSNT_05561___    251 TTCTCGAAGGAGAGCCTGTTCAGCAATCGTAA    282
                     ||.|.|||||.||||||||   |.||..||||
BPUM_3291___s    251 TTTTAGAAGGCGAGCCTGT---GAAACAGTAA    279


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