Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05559 and BPUM_3289

See Amino acid alignment / Visit BSNT_05559 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:10
# Commandline: needle
#    -asequence dna-align/BSNT_05559___flhO.1.24716.seq
#    -bsequence dna-align/BPUM_3289___flhO.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05559___flhO-BPUM_3289___flhO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05559___flhO-BPUM_3289___flhO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05559___flhO
# 2: BPUM_3289___flhO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 880
# Identity:     574/880 (65.2%)
# Similarity:   574/880 (65.2%)
# Gaps:         107/880 (12.2%)
# Score: 1794.0
# 
#
#=======================================

BSNT_05559___      1 TTGTTAAAAGGATTATATACAGCAACATCCGCAATGATTGCCCAGCAGCG     50
                     .|||||||||||.||||.||.||||||||.||.|||||.||.||..||||
BPUM_3289___f      1 GTGTTAAAAGGACTATACACCGCAACATCTGCCATGATCGCTCAAGAGCG     50

BSNT_05559___     51 AAGAACGGAAATGCTTTCAAATAATATTGCTAACGCAAATACATCAGGAT    100
                     ..|.||.|||||||||||||||||||||||.||.||.||||||.||||||
BPUM_3289___f     51 GCGGACAGAAATGCTTTCAAATAATATTGCAAATGCGAATACACCAGGAT    100

BSNT_05559___    101 ATAAAGCTGATCAAGGCTCGATGCGCGCGTTCCCTGAAATGCTGCTCAGC    150
                     |||||||.|||.|.||..|||||||.||.||.||.|||||||||.|.|||
BPUM_3289___f    101 ATAAAGCGGATGAGGGGACGATGCGGGCATTTCCAGAAATGCTGTTAAGC    150

BSNT_05559___    151 AGAATAGAATCA----------AAATCTCC---------GG---------    172
                     .||||.||||||          |||..|||         ||         
BPUM_3289___f    151 CGAATGGAATCAGGACGTTTCCAAACTTCCTCAGGCAAAGGTTTTAGTGT    200

BSNT_05559___    173 -CCGGGACATCGAGGACGGAAATCGGTTCCGTGAATACCGGAGTATATAT    221
                      |||   ||.|.|  |||..|||.||...|.|.|||||.||...||||||
BPUM_3289___f    201 TCCG---CAGCAA--ACGCCAATTGGCGGCATTAATACGGGGACATATAT    245

BSNT_05559___    222 GCAGGAGCTTAAGCCTCTCTTTACACAGGGAAGCCTGAAGTCCACAGACC    271
                     ||||||.||.|..||||..||||||||.||||...|.||..|.|||||.|
BPUM_3289___f    246 GCAGGAACTGATCCCTCAATTTACACAAGGAACGTTAAAAACAACAGATC    295

BSNT_05559___    272 AGCCTATAGACATTGCATTGATCGAAAATCAAGTTCCGATGAATGCGGAA    321
                     |..|.|..||..|.|||.|..||||||||.|.||.|||||.||..|.||.
BPUM_3289___f    296 AAACAACGGATGTCGCACTAGTCGAAAATAATGTGCCGATCAACCCAGAG    345

BSNT_05559___    322 ACCAATGAAAACGCGGCTCTTTTTTATCCGGTTCAA-ACAGCGGATGGAA    370
                     ||.|||.|.||..|.||.||.||||||.||| |||| |||.|.||.||..
BPUM_3289___f    346 ACTAATCAGAAATCAGCGCTCTTTTATGCGG-TCAATACACCAGAAGGCG    394

BSNT_05559___    371 TCCGTTACTCAAAAAGCAGCACATTTTCATTAAATG-AGAACAATCAACT    419
                     |.|||||..|.|||||||||.|..||.||||.||.| |.|| |||||..|
BPUM_3289___f    395 TTCGTTATACGAAAAGCAGCTCGATTACATTGAACGCACAA-AATCAGTT    443

BSNT_05559___    420 GACGATCAACGGACGCCCTGTTTTATC---GACGGATCGCCAGCCAATCA    466
                     |||.|||||.||.||..||.||.|.||   |||.|   |..|||||||||
BPUM_3289___f    444 GACTATCAATGGGCGTGCTCTTCTTTCTGTGACAG---GTGAGCCAATCA    490

BSNT_05559___    467 CTGTTGATAATGAGAATTTCACTGTGTCTGAAAACGGTACTGTGA--CAA    514
                     |.|||.|.|.|||||||||||..|||...|.|.|.||.|||||||  .||
BPUM_3289___f    491 CGGTTCAGAGTGAGAATTTCAAAGTGAACGCAGATGGAACTGTGAGTGAA    540

BSNT_05559___    515 CGAACGGACGGACAGC--CGGCCAGATTGATGT-----------------    545
                       ||.||||  |.|.|  |||.||.||||||||                 
BPUM_3289___f    541 --AATGGAC--AAAACCTCGGGCAAATTGATGTACGTGTTGCGATGGATA    586

BSNT_05559___    546 CA--GAA--TGGCGGAAGATGTCCGCAATCTCAAACGGGACGGAAATGAT    591
                     ||  |||  |||||  |||                   ||.|||||||||
BPUM_3289___f    587 CAAGGAACTTGGCG--AGA-------------------GAAGGAAATGAT    615

BSNT_05559___    592 TTGTACAGCACGGCGGACGGTAATGA---TCTGCCAAGCGCAGCCGGAAA    638
                     ||.|||.|.||.||.||   |||..|   .||||||||.||||.....||
BPUM_3289___f    616 TTATACCGTACAGCTGA---TAACCAGCCCCTGCCAAGTGCAGTTAATAA    662

BSNT_05559___    639 CAATCAGGTATCTTATTCATTAAAACAAGGCGTCTCAGAGCTTTCAAACG    688
                     |..|||..|.||.|||.|.||||..|||||.||.||.|||||.||.||||
BPUM_3289___f    663 CGGTCAAATGTCCTATACGTTAAGTCAAGGTGTATCGGAGCTGTCGAACG    712

BSNT_05559___    689 TGGATGTGACAAGCGCCTATACAGAAATGACTGAA--GCGTACAGATCGT    736
                     ||||||||||.|...|.||||||||||||||  ||  ||.||..||.|.|
BPUM_3289___f    713 TGGATGTGACGAAATCATATACAGAAATGAC--AACCGCCTATCGAGCAT    760

BSNT_05559___    737 TTGAGGCCAATCAGAAGGTTATTCAGGCTTACGATAAAAGTATGGATAAA    786
                     ||||..|.||.||.||.||..|||||||.||.||||||||..||||.|||
BPUM_3289___f    761 TTGAAACAAACCAAAAAGTGGTTCAGGCGTATGATAAAAGCTTGGAAAAA    810

BSNT_05559___    787 GCAGCAAATGAGATCGGAAAAATTTAA---    813
                     ||||..|||||.|||||.|.|.|.||.   
BPUM_3289___f    811 GCAGTGAATGAAATCGGCAGAGTGTACTAA    840


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05559 and BPUM_3289

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
