Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05555 and BPUM_3287
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:10
# Commandline: needle
# -asequence dna-align/BSNT_05555___rapD.1.24716.seq
# -bsequence dna-align/BPUM_3287___rapD1.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05555___rapD-BPUM_3287___rapD1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05555___rapD-BPUM_3287___rapD1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05555___rapD
# 2: BPUM_3287___rapD1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1247
# Identity: 657/1247 (52.7%)
# Similarity: 657/1247 (52.7%)
# Gaps: 373/1247 (29.9%)
# Score: 1462.5
#
#
#=======================================
BSNT_05555___ 1 ATGATTTCGAAGTTTAT---TGAAAAAAGAATGCTAAACATGTT----AG 43
|| |||.||||| |||.|||...|| ||||.|..|| |.
BPUM_3287___r 1 ---AT---GAATTTTATAAGTGATAAATCCAT--TAAAAAACTTCTCCAT 42
BSNT_05555___ 44 ACGAGTGGTATTCCGCAATGAGCAAACGCAAAATGAATC-ACGTTT---G 89
.| |||||||.| ||.||.||| |.||| ||.||| |
BPUM_3287___r 43 TC--GTGGTATAC-----------AATGCTAAA-GCATCGACATTTTTCG 78
BSNT_05555___ 90 CACACTGAAAGAGAAA-------------ATT-GACCAGCACCTTCCAAA 125
.|..|||| ||||| ||| .|.||.||.|.| .|||
BPUM_3287___r 79 AAGGCTGA---AGAAATCAAAACAACTCTATTAAAACATCAACGT-AAAA 124
BSNT_05555___ 126 GATCAAAAAGAACACAAAACTTTGGATGCGTTATCAATTG------TTTC 169
.|||||||| |||| ..||||.||..|.|.||||||..|| |||
BPUM_3287___r 125 TATCAAAAA-AACA-GGAACTCTGTTTACATTATCAGCTGATGCTTTTT- 171
BSNT_05555___ 170 AGGCCCGCCATCAGCTGCTTTTTGAA--AACCAGAACGGACT-------- 209
|||||||||||| |...|||| ||.||||| ||||
BPUM_3287___r 172 -----CGCCATCAGCTG-TGGATGAATCAAACAGAA--GACTTAGAAAAA 213
BSNT_05555___ 210 -CGATTCATTGTTCGA--TGACCTATATGGCCTGGAAGACAAAATGGATG 256
.||..||| || ||| ||.|..|||||..||||
BPUM_3287___r 214 ATGAAACAT-----GAATTGA-----------TGCAGCACAAAGAGGAT- 246
BSNT_05555___ 257 ATGAATTGAA--------ATATTATCTGTA-TTTTTTCTCTGGGTTATAT 297
||||| .||| .|||||..|.|| ||.||||||.|..|| |
BPUM_3287___r 247 ATGAA-CGAAGAACTAGCCTATTACTTTTACTTCTTTCTCGGACTT---T 292
BSNT_05555___ 298 GAGATGGTAAAAACAGC--TCCGAAACATGCAGTACATC----ATTTTAA 341
..||.|.|..||||||| ||..||..||||| ||| ||.|..|
BPUM_3287___r 293 ACGAAGCTTTAAACAGCGATCAAAATGATGCA----ATCTACTATCTCGA 338
BSNT_05555___ 342 AAAAGCTGAACAGTACCTGGCCGCCATTC----AAAATACGTTTGAAGCC 387
|||.||.|| ||.|| |.|.|.||||| |..||..|.|.||.|..
BPUM_3287___r 339 AAAGGCAGA--AGAAC--GACTGTCATTCCTTAACGATGAGCTGGAGGAA 384
BSNT_05555___ 388 GCTGATTTATATTATCAAACCGCCGGCGCCTATTACTTGATGA-AATCAC 436
||.||.||..|||..|..||....||.|..|||| ||.| ||||.|
BPUM_3287___r 385 GCAGAGTTCCATTTCCGTACAAGTGGTGTTTATT-----ATAACAATCGC 429
BSNT_05555___ 437 ----CGCCGCTTTCCATCCAATACGTCA-----AAAAAGCATTACACATC 477
|||.|||.| |.||.||||| |||||||..|..|.|||
BPUM_3287___r 430 TATTCGCTGCTAT-----CGATTCGTCATATTCAAAAAGCGATGGATATC 474
BSNT_05555___ 478 TATTTGC--------------ACCAATTCGGCTATATCAAAAAGGTAATC 513
||||| |||| |.|.||.|||| ||
BPUM_3287___r 475 --TTTGCAAAGCATGGGGATGACCA--TAGCCTCTATC------GT---- 510
BSNT_05555___ 514 ACCTGTAAGCTTTTGCTCGCCGTGAATTATATTGATCAAGAACGCTATGA 563
|||||..||.||||||.|.|.|||||||..||||||.||...|||||
BPUM_3287___r 511 ---TGTAAAATTGTGCTCGGCCTTAATTATAGCGATCAAAAAAAATATGA 557
BSNT_05555___ 564 AAAAGCTGAACAGCTTTTCAAAGAAATCATTAAGAAAACCCAGCAACTAC 613
|.||||.|||...|||||.|..||.||||| |.|||||
BPUM_3287___r 558 AGAAGCCGAAGCTCTTTTTATCGAGATCAT-------------CGACTAC 594
BSNT_05555___ 614 -------------ATGACGAAAACCTGC----TATGCCACGCTTATTATA 646
||||..||.|.|||| ||| ||.|||||||.
BPUM_3287___r 595 GTGAAAATGATTGATGATCAAGAACTGCTCGGTAT----CGTTTATTATG 640
BSNT_05555___ 647 ACCTTGGCTTTTTAAAAGCGACCGAGAAAAAAGAC-CA-GGAAGCGCTTC 694
|...|||.|||.|..|..||| ||.||||..||| || |.|||||||..
BPUM_3287___r 641 ATGCTGGTTTTATTCAGTCGA--GACAAAATCGACACACGAAAGCGCTGG 688
BSNT_05555___ 695 TTTACTTTAGAAAAGTATTAAAGAAT------CAAGAATTTGAAATGAAT 738
..|||||||.|||||.|.| | |.||.||
BPUM_3287___r 689 AATACTTTAAAAAAGCACT------TCGTCTCCCAGCAT----------- 721
BSNT_05555___ 739 TCACC---AGT-------CTCATATCTTCATTGTG--TGTACGAGTCTGT 776
||| ||| |||.|||.| ||.||| |.||.||..||||
BPUM_3287___r 722 --ACCGGAAGTCCGTACACTCCTATGT--ATCGTGCCTCTATGAAACTGT 767
BSNT_05555___ 777 CAGAGCGCT----TTTTAA---------AAC-----AGGGAACATCACAG 808
|||.| ||.||| ||| |.|||| .|
BPUM_3287___r 768 ----GCGTTCCTGTTATAAAGAAAATTTAACCGATGAAGGAA------TG 807
BSNT_05555___ 809 AAGCTAAAGCCGTCCTTCAAAAAGG---AAAAG---------------AA 840
||| ||.| |||||||||| ||||| ||
BPUM_3287___r 808 AAG-TATA-------TTCAAAAAGGATTAAAAGAGGCCGTTGCTTCTCAA 849
BSNT_05555___ 841 T----TATCTGAA-----AAGGTAGACATTCAAACCATTTATTTAAAATT 881
| |||.|.|| ||| .||||||.| ||||||
BPUM_3287___r 850 TTTGATATATTAAGAATCAAG------TTTCAAATC--TTATTT------ 885
BSNT_05555___ 882 AAAAACGCTTGAAGCCCTCTAC------ACCTCAGTGGAAGATCCCTATG 925
||| |||||| ||.|||..||.|| |||
BPUM_3287___r 886 -------CTT------CTCTACAGCCAAACGTCAAAGGCAG------ATG 916
BSNT_05555___ 926 AGCAGCT------GCTCG-AATATGTGCTTGAATTAGAAAAAATCGAGGC 968
|||||.| |||.| .|.||| .|||||| .||||| ||.||
BPUM_3287___r 917 AGCAGATCGCAAGGCTTGTTACATG-CCTTGAA--CGAAAA----GAAGC 959
BSNT_05555___ 969 GTGGGTGGATTTAGAAGTGCTGTTAGAAGATATTACGGAATACTACAAAA 1018
||||.|.|||.|.||.|...||.|.|..|||.|..|.||.|..|||||||
BPUM_3287___r 960 GTGGATTGATCTTGAGGATTTGCTTGCCGATGTCTCAGATTTTTACAAAA 1009
BSNT_05555___ 1019 AAAAGGACGATTTCGAAAAAGCCGCTTTTTTTATCATGCGCGGCTGA 1065
||||||.|||.||.||...||||||.||||||||||||.|.||||||
BPUM_3287___r 1010 AAAAGGGCGACTTTGAGCGAGCCGCCTTTTTTATCATGAGAGGCTGA 1056
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