Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05546 and BPUM_3284
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:10
# Commandline: needle
# -asequence dna-align/BSNT_05546___ywpF.1.24716.seq
# -bsequence dna-align/BPUM_3284___ywpF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05546___ywpF-BPUM_3284___ywpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05546___ywpF-BPUM_3284___ywpF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05546___ywpF
# 2: BPUM_3284___ywpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 444
# Identity: 286/444 (64.4%)
# Similarity: 286/444 (64.4%)
# Gaps: 66/444 (14.9%)
# Score: 810.5
#
#
#=======================================
BSNT_05546___ 1 ATGAAAACCTTTAAACTGGTTGACCTGAATGTGGAACGAGTGGA---CAA 47
|||||||||||||..|||.||||..|.||..|.|||| |.|| .||
BPUM_3284___y 1 ATGAAAACCTTTAGGCTGATTGATTTAAAAATCGAAC---TTGATCCAAA 47
BSNT_05546___ 48 GGAAGA-ACAATCAATCGAACAGTTTCCCCTTATTGACGGACTGATTATA 96
|.|||| |.||| .||.|.|| ||||||||..||||||..|.||.||.
BPUM_3284___y 48 GCAAGATAAAAT--GTCCAGCA--TTCCCCTTCGTGACGGTTTAATCATT 93
BSNT_05546___ 97 AATAAAGAAGACGGTGAAAATCACTGGCTGATTGAGGCGCTTGT---ACA 143
|||||||||||.||.||||||||||||.||||.|||||.||..| |.|
BPUM_3284___y 94 AATAAAGAAGATGGAGAAAATCACTGGATGATCGAGGCACTCATCCCAAA 143
BSNT_05546___ 144 GAAAGA---ACATCTGTCTTTTTTTGAACAGCT-TCTAAACAGC-CAATC 188
||||.| |||..|| |||||...||| |.|.|.|||| || |
BPUM_3284___y 144 GAAACATAGACAGGTG------TTTGAGGTGCTCTTTCAGCAGCACA--C 185
BSNT_05546___ 189 TGAAGCCAAAGTATTTGTAACGATCACGAAAAAAAGCAATCGCCCCGCCC 238
|||||..||..|..|.|||||||||||||||.|||.|||.|||||.|..|
BPUM_3284___y 186 TGAAGTGAAGATTCTAGTAACGATCACGAAAGAAAACAACCGCCCTGTTC 235
BSNT_05546___ 239 AGCTGACAG--CAGCAGTGAAAAATATCGTCAAGC--TGGAAGAAAGCAT 284
|.||..|.| || |||.|||||.||.|| .|| |.|||||||.|||
BPUM_3284___y 236 ATCTATCTGTCCA--AGTCAAAAACATTGT--TGCTTTAGAAGAAAACAT 281
BSNT_05546___ 285 CCAGGTTTTACTCTATGG----------ACAAATGGTCACA----AGAAA 320
....||..|.|||.|||| ||||||.|..||| |||||
BPUM_3284___y 282 TTCTGTGCTGCTCGATGGTAAGATGATTACAAATCGCTACAGAACAGAAA 331
BSNT_05546___ 321 AC--AGCAGGGCACTGAAACCATTCTCGAGTCCCTTGTAAAAGA-GGGCT 367
.| ||.| |.|||.||| || |||.||.||||| |||||
BPUM_3284___y 332 CCGAAGAA--GTACTTAAA--------GA---CCTCGTCAAAGAGGGGCT 368
BSNT_05546___ 368 ATACAGGAACAAAACTCATTGAAGCATTTAAGCAAAAGTTATAA 411
|.|.|||..||||||..|.||.||||||||.|||||...||||
BPUM_3284___y 369 -TTCCGGAGAAAAACTACTAGATGCATTTAAACAAAACACATAA 411
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