Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05540 and BPUM_3281
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:09
# Commandline: needle
# -asequence dna-align/BSNT_05540___ywpJ.1.24716.seq
# -bsequence dna-align/BPUM_3281___ywpJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05540___ywpJ-BPUM_3281___ywpJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05540___ywpJ-BPUM_3281___ywpJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05540___ywpJ
# 2: BPUM_3281___ywpJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 927
# Identity: 570/927 (61.5%)
# Similarity: 570/927 (61.5%)
# Gaps: 171/927 (18.4%)
# Score: 1701.0
#
#
#=======================================
BSNT_05540___ 1 GTGAAATTAATTGCGATTGATTTAGATGGAACCTTACTCAACAGCAAGCA 50
|.||| ||.|.||||..||
BPUM_3281___y 1 --------------------------TTGAA---TAGTGAACACAAA--- 18
BSNT_05540___ 51 TCAGGTAAGCTTGGAAAATGAAAACGCACTGCGGCAGGC----------G 90
||.|||..||||||||| |||||| |
BPUM_3281___y 19 ----GTGAGCCGGGAAAATGA------------GCAGGCATTAAAGGAAG 52
BSNT_05540___ 91 CAGCTGGACG----GCATTGAAGTGGTGGTGTCAACTGGGCGCGCTCATT 136
|||| |.|| |.||.|||||.||.||.||.||.||..|.||..|||
BPUM_3281___y 53 CAGC--GGCGAATAGAATGGAAGTTGTCGTTTCTACAGGAAGAGCGTATT 100
BSNT_05540___ 137 TTGACGTCATGTCAATCTTTGAACCGCTGGGGATCAAAACATGGGTCATC 186
||||.||.|.|||.||.|||||...|||.|||||.||.||||||||.||.
BPUM_3281___y 101 TTGATGTGAGGTCTATTTTTGATGAGCTTGGGATGAATACATGGGTGATT 150
BSNT_05540___ 187 AGTGCAAACGGCGCCGTCATTCACGATCCCGAC--GGCAGGCTTTATCAT 234
|||||.||.||.||.||.|||||.||| ||||| ||||.| |.||||||
BPUM_3281___y 151 AGTGCCAATGGAGCTGTGATTCATGAT-CCGACTGGGCAAG-TATATCAT 198
BSNT_05540___ 235 ------------CACGAAACGATTGATAAG---AAACGGGCGTATGACAT 269
||.||| ||.||| ||||| |||
BPUM_3281___y 199 TCAGCTGCTTTACAAGAA------GAAAAGGCCAAACG---------CAT 233
BSNT_05540___ 270 TCTCTCATGGCTTGAGTCGGAAAAC-----TATTATTATGAGGTATTCAC 314
..|.||||||||||| |.||| |||||.|||||.||.||.||
BPUM_3281___y 234 ATTATCATGGCTTGA-----AGAACGTGGTTATTACTATGAAGTTTTTAC 278
BSNT_05540___ 315 AGGTTCAGCGATTTATACGCCGCAAAAC--GGCAGAGAACTTCTTGATGT 362
|.....|||.||||..||.||| ||.| ||.|||||.|||||.|...|
BPUM_3281___y 279 AAACGAAGCCATTTTCACACCG--AATCGTGGTAGAGAGCTTCTGGCGAT 326
BSNT_05540___ 363 TGAGCTGGACAGATTCAGAAGCGCAAACCCGGAAACAGATCTTTCTGTCC 412
|||..|||||.|.||.|.|||.|||||.||.|||||.||.||...|||..
BPUM_3281___y 327 TGAAATGGACCGCTTAAAAAGTGCAAATCCAGAAACGGACCTGAGTGTTT 376
BSNT_05540___ 413 TTAAGCAGGCGGCCGAGGTGCAATACAGCCAATCGGGCTTTGCTTACATT 462
|.||.||.|||||.||.||.||||||||.||.||.||.|||.||||.|||
BPUM_3281___y 377 TAAAACAAGCGGCAGAAGTTCAATACAGTCAGTCAGGTTTTTCTTATATT 426
BSNT_05540___ 463 AACTCCTTTCAAGAGCTGTTTGAAGCCGATC---AGC---CAATCGATTT 506
.|..|.|.|.|||||.|||||.|.|..|||| ||| || ||
BPUM_3281___y 427 GATACATATAAAGAGTTGTTTCATGAGGATCGGAAGCTTTCA------TT 470
BSNT_05540___ 507 TTACAATATTCTCGGCTTTTCTTTCTTCAAAGAAAAGCTTG-AGGCAGGC 555
.|||||.||..|.||.||.||||||||..||| |.||.||| |||||||.
BPUM_3281___y 471 CTACAACATCTTAGGTTTCTCTTTCTTTGAAG-ACAGATTGAAGGCAGGG 519
BSNT_05540___ 556 TGGAAAAGAT-------ATGAGCATGCCGAAGATTTGACGCTTGTCAGTT 598
||| ||| .|||..|||| ||| |.|.||..|.|||||||
BPUM_3281___y 520 TGG----GATCAGTTTGGTGATGATGC--AAG-TGTCACAATGGTCAGTT 562
BSNT_05540___ 599 CGGCTGAGCACAACTTTGAGCTTTCTTCCCGCAAA----GCTTCCAAGGG 644
|.||.||.||.||||||||..||..| ||||| |||||.||.||
BPUM_3281___y 563 CAGCCGATCATAACTTTGAAATTGGT----GCAAAGGACGCTTCTAAAGG 608
BSNT_05540___ 645 GCAGGCGCTGAAGAGGCTTGCAAAACAGCTGAATATTCCGCT---CGAGG 691
.||.||..|.|..|||||.|||.|||..||...||||||..| |.||
BPUM_3281___y 609 CCAAGCATTAACAAGGCTGGCAGAACGTCTTGGTATTCCTTTAAGCCAG- 657
BSNT_05540___ 692 AAACCGCTGCTGTAGGTGACAGTTTAAATGACAAATCGATGC-TGGAG-- 738
||.||.||||||||.||.||||||||||||.||||||||| |.|||
BPUM_3281___y 658 --ACAGCGGCTGTAGGAGATAGTTTAAATGACGAATCGATGCTTCGAGCA 705
BSNT_05540___ 739 GCTG----CGGGAAAAGGTGTAGCGATGGGCAATGCCCGGGAAGATATCA 784
|||| .|||| |.||||||||||||||..|..|.|||||.|
BPUM_3281___y 706 GCTGGTGTTGGGA-------TTGCGATGGGCAATGCGAGACAGGATATAA 748
BSNT_05540___ 785 AATCGATAGCCGATGCGGTCACCTTAACCAATGACGAACATGGTGTCGCA 834
||...||.||.|||...|||||.|||||.|||||.|||||||||||.||.
BPUM_3281___y 749 AAGAAATCGCTGATCATGTCACGTTAACAAATGATGAACATGGTGTGGCG 798
BSNT_05540___ 835 CATATGATGAAACA---TTTGATGTAG 858
||||||||...||| |||||..|||
BPUM_3281___y 799 CATATGATTCGACACCTTTTGAAATAG 825
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