Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05509 and BPUM_3274
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_05509___ywrB.1.24716.seq
# -bsequence dna-align/BPUM_3274___ywrB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05509___ywrB-BPUM_3274___ywrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05509___ywrB-BPUM_3274___ywrB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05509___ywrB
# 2: BPUM_3274___ywrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 625
# Identity: 395/625 (63.2%)
# Similarity: 395/625 (63.2%)
# Gaps: 104/625 (16.6%)
# Score: 1266.0
#
#
#=======================================
BSNT_05509___ 1 ATGAAAAACCATCCTTATCGGGATATGACGGCCGCAATGGTTCGCACCGG 50
|||||.||.|||||
BPUM_3274___y 1 ------------------------------------ATGGTGCGAACCGG 14
BSNT_05509___ 51 CATATTAGGGTTCGGCGGCGGACCTTCCGTGATTCCGCTGATCCGCCATG 100
|||..|.||.||.|||||.||.||||||||.||.||.||.||.|||||||
BPUM_3274___y 15 CATTCTCGGTTTTGGCGGAGGTCCTTCCGTTATACCACTCATTCGCCATG 64
BSNT_05509___ 101 AAGCGGTCAAT----AAATATAAATGGATTGACGATGATGAATTCGGAGA 146
||||| || ||||||.|||||.|..|.|||||.|||||.|||||
BPUM_3274___y 65 AAGCG----ATGGTGAAATATCAATGGGTCAATGATGACGAATTTGGAGA 110
BSNT_05509___ 147 AATATTAGCAATCGCTAATGCGCTTCCCGGACCGATTGCCACCAAAATGG 196
||.|.|.||.|||||.|||||..|.||.||.||.||.||.|||||||||.
BPUM_3274___y 111 AACACTCGCCATCGCCAATGCATTACCAGGTCCAATCGCGACCAAAATGT 160
BSNT_05509___ 197 CTGCTTATCTGGGCTTTAAGCTAAAAGGCACAATAGGTGCAGTTGTGGCG 246
|.||.|||||.||||.|....|.||.|||..|...||.|||.|.||.||.
BPUM_3274___y 161 CAGCCTATCTTGGCTATCGATTGAAGGGCGTATCCGGCGCAATCGTCGCA 210
BSNT_05509___ 247 AC-CCTCGCCCACATTCTGCCTACATGTCTTGCGATGGTGG--------- 286
|| .|| |||||.|||.|.||.||||||||.||.|||||||
BPUM_3274___y 211 ACAGCT-GCCCATATTTTACCGACATGTCTCGCCATGGTGGCACTCGTCA 259
BSNT_05509___ 287 -GCTTGTTTGCGGCTGTAAATGTGTTAAGCCATTCAGCAATTGTTGCAGG 335
.|||||..|| ||.||.|||...|||..|||..||..|..
BPUM_3274___y 260 CACTTGTCAGC----------GTCTTGAGCTCCTCACAAATCATTCAAAA 299
BSNT_05509___ 336 TATGATTGGTGCTGTCACGCCGGTAATTGCGGTCATGCTCGGAATCATGG 385
|||||||||.|||||.||.||.||.|||||.||..|.||.||.|||||||
BPUM_3274___y 300 TATGATTGGCGCTGTGACACCAGTCATTGCCGTTCTACTTGGGATCATGG 349
BSNT_05509___ 386 CGTACGAGTTTGGCCAAAAAGCGCTTAAAGGTTTCGGCTGGGTCACCGGT 435
|.|||||||||||.||||||.||||.|||||.|||||...|.||..|||.
BPUM_3274___y 350 CATACGAGTTTGGACAAAAAACGCTGAAAGGCTTCGGAATGATCTTCGGG 399
BSNT_05509___ 436 AT---CCTGTTTTTTATCATCGCTTTTATCGGCCTGCA--AACTTTACAG 480
|| .|||||..|| .|.||.||||||||.||||| ..||.|.|
BPUM_3274___y 400 ATTGCTCTGTTCCTT---CTGGCCTTTATCGGGCTGCAGGTCCTGTCC-- 444
BSNT_05509___ 481 ATTAATCCCGG---CCTTGTCATTATCATTTTCTTAGCATACGGGGCGTT 527
|||.||||.|| |.|||||||||||.||||.| || ||.||.||.||
BPUM_3274___y 445 ATTCATCCAGGAATCATTGTCATTATCTTTTTAT--GC-TATGGCGCATT 491
BSNT_05509___ 528 TCATTTTAAACTGAAAGACAA------AATC--ACAAATAAACATTCAAA 569
||||||.||||| ||.|||| |||| .||||| ||
BPUM_3274___y 492 TCATTTCAAACT--AAAACAACGCTGGAATCGACCAAAT---------AA 530
BSNT_05509___ 570 AGATAAAGGAATGTCAGCCTCATGA 594
|||.||||||.||| |.||||||
BPUM_3274___y 531 AGAGAAAGGAGTGT---CTTCATGA 552
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