Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05486 and BPUM_3272

See Amino acid alignment / Visit BSNT_05486 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:07
# Commandline: needle
#    -asequence dna-align/BSNT_05486___alsD.1.24716.seq
#    -bsequence dna-align/BPUM_3272___alsD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05486___alsD-BPUM_3272___alsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05486___alsD-BPUM_3272___alsD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05486___alsD
# 2: BPUM_3272___alsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 849
# Identity:     525/849 (61.8%)
# Similarity:   525/849 (61.8%)
# Gaps:         159/849 (18.7%)
# Score: 1514.5
# 
#
#=======================================

BSNT_05486___      1 ------------------ATGA--------AACGAGA-AAG-CAACATTC     22
                                       ||||        |||||.| ||| ||||||  
BPUM_3272___a      1 ATGGGTATGATGCACCCAATGAATCAACAGAACGACACAAGACAACAT--     48

BSNT_05486___     23 AAGTGCTCAGACGCGGTCAAAAAGATCAGCCTGTGAGCCAGA--TTTATC     70
                                    |.||||             .|||.|||  |.||||
BPUM_3272___a     49 ---------------GACAAA-------------CAGCAAGAAGTCTATC     70

BSNT_05486___     71 AAGTATCAACAATGACTTCTCTATTAGACGGAGTATATGACGGAGATTTT    120
                     |||||||.||.|||||.|||.|..|.||.|..||||||||.||||||||.
BPUM_3272___a     71 AAGTATCGACGATGACCTCTTTGCTGGAAGCCGTATATGATGGAGATTTC    120

BSNT_05486___    121 GAACTGTCAGAGATTCCGAAATATGGAGACTTCGGTATCGGAACCTTTAA    170
                     ...||.|||.|.|||||..|..|.||.||.|||||.||.||.||.||.||
BPUM_3272___a    121 TCCCTTTCACAAATTCCCGAGCACGGTGATTTCGGGATTGGTACATTCAA    170

BSNT_05486___    171 -CAAGCTT-GACGGAGAGCTGATTGGGTTTGACGGCGAATTTTACCGTCT    218
                      |||  || ||.|||||||||||.||.||||||||||.||||||.||.||
BPUM_3272___a    171 TCAA--TTAGATGGAGAGCTGATCGGCTTTGACGGCGCATTTTATCGACT    218

BSNT_05486___    219 CCGTTCAGACGGAACCGCGACACCGGT--CCAAAACGGGGATC------G    260
                     .||.||.||.|||||.||||||||.||  ||        ||||      .
BPUM_3272___a    219 GCGCTCGGATGGAACAGCGACACCAGTTACC--------GATCAAGACTA    260

BSNT_05486___    261 TTCTCCGTTCTGTTCATTTA-CGTTCTTTACACCGGACATGACG--CACA    307
                     |||.||.|||||.|| |.|| |.||||||..|.|.||.||  ||  ||..
BPUM_3272___a    261 TTCGCCTTTCTGCTC-TCTAGCATTCTTTGAAACTGATAT--CGTTCATC    307

BSNT_05486___    308 AAATTGATGCGAAAATGACACGCGAAGACTTTGAAAAAGAGATCAACAGC    357
                     .|||||||||....|||||..||.||||..|.|||.||||.|||.||.||
BPUM_3272___a    308 GAATTGATGCAGCCATGACGAGCAAAGAGCTAGAAGAAGAAATCGACCGC    357

BSNT_05486___    358 ATGCTGCCAAGCAGAAACTTATTTTATGCAATTCGTATTGACGGATTGTT    407
                     ||..|.||.||.|..||..|.||||||||.||.||.|||||.||....||
BPUM_3272___a    358 ATTTTACCGAGTAAGAATGTGTTTTATGCGATCCGCATTGATGGTACATT    407

BSNT_05486___    408 TAAAAAGGTGCAGACAAGAACGGTAGAACTTCAAGAAAAACCTTACGTGC    457
                     .||||||||.||.|||.|.|||||.|||...||.||||||||||||||.|
BPUM_3272___a    408 CAAAAAGGTTCAAACACGTACGGTCGAAAAACAGGAAAAACCTTACGTTC    457

BSNT_05486___    458 CAATGGTTGAAGCGGTCAAAACACAGCCGATTTTCAACTTCGA-------    500
                     |.|||||.|||||.|||||..|||||||.||.|||.|.|||||       
BPUM_3272___a    458 CGATGGTGGAAGCAGTCAAGTCACAGCCCATCTTCGATTTCGAGGATATT    507

BSNT_05486___    501 CAACGTGAGAGGAACAATCGTAGGTTTCTTGACAC--CAGCTTATGCAAA    548
                     ||       |||||||||||..||||||...||||  |||  ||||||.|
BPUM_3272___a    508 CA-------AGGAACAATCGCCGGTTTCCGTACACCTCAG--TATGCACA    548

BSNT_05486___    549 CGGAATCGCCGTTTCAGGCTATCACCTGCACTTCATTGACGAAGGACGCA    598
                     .||.||.||.||....||.|||||.||.||.||||||||.||.|..||.|
BPUM_3272___a    549 TGGTATTGCGGTGAGTGGATATCATCTTCATTTCATTGATGACGATCGAA    598

BSNT_05486___    599 ATTCAGGCGGACACGTTTTTGACTA---TGTGCTTGA-GGATTG--CACG    642
                     .|...|||||||||||.|||||.||   ||   |||| ..|.||  ||  
BPUM_3272___a    599 GTGTTGGCGGACACGTATTTGATTACACTG---TTGATCAAGTGACCA--    643

BSNT_05486___    643 GTTACG-ATTTCTCAAAA----AATGAACATGAATCT-CAGACTTCCGAA    686
                       |.|| |||||.|||||    .||    ||||||.| || .||.|||||
BPUM_3272___a    644 --TCCGAATTTCACAAAAGCGTCAT----ATGAATTTACA-CCTGCCGAA    686

BSNT_05486___    687 CACAGC-GGATTTCTTTAATGCGAATCTGGATAACCCTGATTTTGCGA-A    734
                     ||| || |||.|||||     |.||.|.|    ||..||||    ||| .
BPUM_3272___a    687 CAC-GCAGGAATTCTT-----CCAAGCAG----ACATTGAT----CGAGC    722

BSNT_05486___    735 AGATATCG------AAA----CAA--CTGAAGGAAGCCC---TGAATAA    768
                     .||..|||      |||    |||  |.|||.|.|||||   |.|||||
BPUM_3272___a    723 TGACCTCGCACAGCAAATTGCCAATGCAGAAAGTAGCCCAGATCAATAA    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05486 and BPUM_3272

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
