Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05474 and BPUM_3263
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:06
# Commandline: needle
# -asequence dna-align/BSNT_05474___rbsR.1.24716.seq
# -bsequence dna-align/BPUM_3263___rbsR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05474___rbsR-BPUM_3263___rbsR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05474___rbsR-BPUM_3263___rbsR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05474___rbsR
# 2: BPUM_3263___rbsR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1042
# Identity: 694/1042 (66.6%)
# Similarity: 694/1042 (66.6%)
# Gaps: 107/1042 (10.3%)
# Score: 2036.5
#
#
#=======================================
BSNT_05474___ 1 TTGGCTACAATTAAAGATGTCGCCGGAGCGGCGGGCGTTTCAGTTGCGAC 50
||||||||||||||||||||.||...|||.||....||.||.|||||.||
BPUM_3263___r 1 TTGGCTACAATTAAAGATGTTGCAAAAGCTGCACAAGTATCTGTTGCCAC 50
BSNT_05474___ 51 GGTTTCCCGCGTCCTGAATGATAACGGCTATGTACACGAAGTAACGCGAA 100
.|||||.|||||.|||||.||||..||.|||||.||...||..|||..||
BPUM_3263___r 51 TGTTTCGCGCGTACTGAACGATACTGGATATGTCCATACAGATACGAAAA 100
BSNT_05474___ 101 --CGCGTGTCATAGCGGCGATGGCGAAGCTGAACTA-TTACCCGAATGAA 147
||||||.||.| |||||||..|.|||||||||| ||.||| ||||||
BPUM_3263___r 101 CCCGCGTGACACA--GGCGATGCAGGAGCTGAACTACTTTCCC-AATGAA 147
BSNT_05474___ 148 GTTGCCAGATCTCTATATAAAAGAGAATCCCGACTGATCGGACTTTTGCT 197
||.||.|||||.||.|..|||||||||||.||..|.||||| ||||.|
BPUM_3263___r 148 GTGGCTAGATCCCTTTTCAAAAGAGAATCTCGCTTAATCGG---TTTGAT 194
BSNT_05474___ 198 C---CCGGATATCACAAACCCTTTCTTCCCCCAGCTTGCCCGCGGTGCGG 244
| ||.||||||||||||||.|||||.||.||||||||..|.||.|..|
BPUM_3263___r 195 CTTACCTGATATCACAAACCCCTTCTTTCCTCAGCTTGCTAGAGGCGTAG 244
BSNT_05474___ 245 AGGATGA-ATTGAACCGGGAAGGCTATCGCCTTATT-TTCGGCAACAGTG 292
||||||| |||.|..| |.||||.|.||| .||||| |||||.|||||||
BPUM_3263___r 245 AGGATGAGATTCATGC-GCAAGGTTTTCG-GTTATTATTCGGTAACAGTG 292
BSNT_05474___ 293 ACGAGGAATTGAAAAAAGAACTTGAATACCTTCAAACCTTTAAGCAAAAT 342
|.||.||..|..|.||||||.|.|..||..|.|||||.|||||.||||||
BPUM_3263___r 293 ATGAAGATCTAGAGAAAGAATTGGCTTATTTACAAACATTTAAACAAAAT 342
BSNT_05474___ 343 CATGTCGCAGGCATTATTGCCGCAACGAAT-TACCCGGATCTCGAGGAAT 391
||.||.|..||..|.||.||.|..||.||| .|||||.||| .||...||
BPUM_3263___r 343 CAAGTGGTCGGTGTCATCGCTGTCACAAATGAACCCGAATC-AGATATAT 391
BSNT_05474___ 392 ACA--GCGGCATGAATTATCCCGTTGTTTTTCTGGACAGAAC--ACTGGA 437
||| |..| ||||||| .||.|||||.||..|.||..|||| .||.|.
BPUM_3263___r 392 ACAATGATG-ATGAATT-GCCTGTTGTGTTCTTAGATCGAACCGTCTCGC 439
BSNT_05474___ 438 AGGGGCTCCTTCTGTGTC--CAG-TGACGGCTA-TACAGGAGGAAAGTTA 483
| .||.||||||||.|| ||| | |||| .||.||.||.||..|.
BPUM_3263___r 440 A--TGCACCTTCTGTATCTGCAGAT----GCTACAACTGGCGGGAAAATG 483
BSNT_05474___ 484 GCCGCTCAGGCTATCATT---CACGGAAAAAGCCAGCGCATTACGCTCTT 530
|||||...||...|.||| |.|||.|..||.||| ||.||.||..|
BPUM_3263___r 484 GCCGCAATGGAATTAATTAGGCGCGGTAGCAGGCAG---ATCACACTGCT 530
BSNT_05474___ 531 GAGAGGACCCGCTCACCTGCCGACCGCTCAAG--ACCGCTTTAATGGCGC 578
||.||||||.||.|||||.|..||.| |.|| |.||.||.||.||.||
BPUM_3263___r 531 GAAAGGACCTGCCCACCTTCAAACAG--CGAGGCAGCGATTCAAAGGTGC 578
BSNT_05474___ 579 TTTGGA------AATCTTAAAGCAGGCTGAAGTTGAGTTTCAGGTCATTG 622
..|.|| ||.|..||| |||| ||.||.||.||.||.||..
BPUM_3263___r 579 ACTCGATGTACTAACCGAAAA--AGGC----GTCGACTTCCATGTGATGT 622
BSNT_05474___ 623 AGACCGCTTCATTTTCTATTAAAGATG--CACAATCGATGGCGAAGGAGC 670
..|..|||||.||||||.||.||||.| |.||| ||..||.||| ||
BPUM_3263___r 623 CTAATGCTTCGTTTTCTTTTCAAGAAGCCCGCAA--GAGTGCTAAG--GC 668
BSNT_05474___ 671 TGTTTGCC-GCT-TATCCAGCGACAGATGGTGTAATCGCGAGTAATGATA 718
|.|||.|| ||| |||||.|..||||||||..|.||.||.||||||||.|
BPUM_3263___r 669 TCTTTTCCAGCTGTATCCTGAAACAGATGGCATCATTGCCAGTAATGACA 718
BSNT_05474___ 719 TT----CAAGCCGCTGCCGTTTTACATGAAGCATTGCGGCGCGGAAAAAA 764
|| ||| |.||.||..||||||||||..|.|||..|||||||..
BPUM_3263___r 719 TTGTCGCAA----CAGCAGTCATACATGAAGCCCTTCGGATCGGAAAAGC 764
BSNT_05474___ 765 CGTGCCGGAGGACATTCAAATTATCGGCTATGATGACATTCCGCAAAGCG 814
|||.||.|||||..|||||||.||.||.|.|||.||.|||||||||||.|
BPUM_3263___r 765 CGTTCCAGAGGATGTTCAAATCATTGGGTTTGACGATATTCCGCAAAGTG 814
BSNT_05474___ 815 GACTTCTGTTCCCGCCACTTTCTACAATTAAACAGCCCGCATATGATATG 864
..||.||.|||||..|.||.||.||.||||..|||||.||.|||||.|||
BPUM_3263___r 815 AGCTGCTCTTCCCTTCCCTATCGACGATTAGGCAGCCTGCCTATGAAATG 864
BSNT_05474___ 865 GGAAGAGAAGCTGC-CAAACTGCTTTTGGGCATCATCAAA---------A 904
||||.||||||.|| || |||.| |.||.||| |
BPUM_3263___r 865 GGAAAAGAAGCAGCGCA----GCTGT------TAATGAAAGCGATTCAGA 904
BSNT_05474___ 905 AACAGCCGCTGGCAGA--AACGGCAATT---CAAATGCCTGTCACCTATA 949
||||.|||.| ||| ||| ||||| ||||||||.|||.|.|.||
BPUM_3263___r 905 AACAACCGAT---AGATCAAC--CAATTATCCAAATGCCCGTCTCTTTTA 949
BSNT_05474___ 950 TAGGAAGAAAGACGACAAGAAAGGAAGATT-ACGATGCGTAA 990
|.|.|.||.||||.||||||||||..|||| ||.|||.
BPUM_3263___r 950 TTGAACGAGAGACAACAAGAAAGGTGGATTCACAATGA---- 987
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