Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05472 and BPUM_3259
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:06
# Commandline: needle
# -asequence dna-align/BSNT_05472___ywsC.1.24716.seq
# -bsequence dna-align/BPUM_3259___ywsC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05472___ywsC-BPUM_3259___ywsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05472___ywsC-BPUM_3259___ywsC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05472___ywsC
# 2: BPUM_3259___ywsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1192
# Identity: 936/1192 (78.5%)
# Similarity: 936/1192 (78.5%)
# Gaps: 20/1192 ( 1.7%)
# Score: 3621.5
#
#
#=======================================
BSNT_05472___ 1 ATGTGGTTACTCATTATAGCCTGTGCTGTCATACTGGTCATCGG-AATAT 49
|||||||||.||.||||||||||||...||||..|.|..||.|| ..|||
BPUM_3259___y 1 ATGTGGTTAATCGTTATAGCCTGTGTCATCATGTTAGGGATTGGCTTTAT 50
BSNT_05472___ 50 TAGAAAAACGA--CGACATCAGAAAAACATTGATGCCCTCCCTGTTCGGG 97
| ||||| || ||.||.||||||||.||.||||||||.||.||.||.|
BPUM_3259___y 51 T-GAAAA--GAAGCGTCACCAGAAAAATATCGATGCCCTACCGGTGCGCG 97
BSNT_05472___ 98 TGAATATTAACGGCATCCGCGGAAAATCGACTGTGACAAGGCTGACAACC 147
|.||||||||.||.||.||||||||.||.||.||.|||||..||||||||
BPUM_3259___y 98 TCAATATTAATGGTATTCGCGGAAAGTCTACCGTTACAAGATTGACAACC 147
BSNT_05472___ 148 GGAATATTAATAGAAGCCGGTTACAAGACTGTTGGAAAAACAACAGGAAC 197
||.||.|||||.||.||.|||||.||.|||||.||.||||||||.|||||
BPUM_3259___y 148 GGTATCTTAATGGAGGCAGGTTATAAAACTGTCGGCAAAACAACGGGAAC 197
BSNT_05472___ 198 AGATGCAAGAATGATTTACTGGGACACACCGGAGGAAAAGCCGATTAAAC 247
.|||||||||||||||||.|||||.||.||.|||||.||.|||||||||.
BPUM_3259___y 198 TGATGCAAGAATGATTTATTGGGATACGCCAGAGGAGAAACCGATTAAAA 247
BSNT_05472___ 248 GGAAACCTCAGGGGCCGAATATCGGAGAGCAAAAAGAAGTCATGAGAGAA 297
|||||||.||.||.|||||||||||.|||||.||.|||||.|||||||||
BPUM_3259___y 248 GGAAACCGCAAGGACCGAATATCGGTGAGCAGAAGGAAGTTATGAGAGAA 297
BSNT_05472___ 298 ACAGTAGAAAGAGGGGCTAACGCGATTGTCAGTGAATGCATGGCTGTTAA 347
||.||.||||||||.||.||.||.||.|||||||||||.|||||.||.||
BPUM_3259___y 298 ACCGTTGAAAGAGGAGCAAATGCCATCGTCAGTGAATGTATGGCGGTCAA 347
BSNT_05472___ 348 CCCAGATTATCAAATCATCTTTCAGGAAGAACTTCTGCAGGCCAATATCG 397
.||||||||.|||||.||||||||||||||.||.||.||.||.|||||.|
BPUM_3259___y 348 TCCAGATTACCAAATTATCTTTCAGGAAGAGCTGCTTCAAGCGAATATTG 397
BSNT_05472___ 398 GCGTCATTGTGAATGTTTTAGAAGACCATATGGATGTCATGGGGCCGACG 447
||||.||.||.||.|||.|.|||||.||||||||.||||||||||||||.
BPUM_3259___y 398 GCGTGATCGTAAACGTTCTTGAAGATCATATGGACGTCATGGGGCCGACA 447
BSNT_05472___ 448 CTTGATGAAATTGCAGAAGCGTTTACCGCTACAATTCCTTATAATGGCCA 497
|||||||||||.||||||||.|||||.||.|||||||||||.|||||.||
BPUM_3259___y 448 CTTGATGAAATAGCAGAAGCCTTTACAGCGACAATTCCTTACAATGGACA 497
BSNT_05472___ 498 TCTT-GTCATTACAGATAGTGAATATACCGAGTTCTTTAAACAAAAAGCA 546
||| ||.|||||.||||||||||||||.||.|||||||||.|.|..||.
BPUM_3259___y 498 -CTTGGTTATTACGGATAGTGAATATACGGATTTCTTTAAAGAGATTGCG 546
BSNT_05472___ 547 AAAGAACGAAACACAAAAGTCATCATTGCTGATAACTCAAAAATTACAGA 596
|||.||||.||.||..||||.||..||||.|||||.||.||.|||.|.||
BPUM_3259___y 547 AAAAAACGCAATACTGAAGTTATTGTTGCAGATAATTCCAAGATTTCTGA 596
BSNT_05472___ 597 TGAGTATTTACGTAAATTTGAATACATGGTATTCCCTGATAACGCTTCTC 646
||||||||||||.||||||||.||||||||.|||||.|||||.||.||.|
BPUM_3259___y 597 TGAGTATTTACGGAAATTTGAGTACATGGTCTTCCCAGATAATGCCTCAC 646
BSNT_05472___ 647 TGGCGCTGGGTGTGGCTCAAGCACTCGGCATTGACGAAGAAACAGCATTT 696
|.||.||.|||||.||.||.|||.|.||.|||||.|||||.||.|||||.
BPUM_3259___y 647 TTGCACTTGGTGTTGCACAGGCATTGGGAATTGATGAAGATACGGCATTC 696
BSNT_05472___ 697 AAGGGAATGCTGAATGCGCCGCCAGATCCGGGAGCAATGAGAATTCTTCC 746
...||||||.|.||||||||.||.|||||.|||||.||||||||||||||
BPUM_3259___y 697 CGAGGAATGTTAAATGCGCCACCTGATCCAGGAGCGATGAGAATTCTTCC 746
BSNT_05472___ 747 GCTGATCAGTCCGA-GCGA----GCCTGGGCACTTTGTTAATGGGTTTGC 791
..|.|| .|| |||| .|||||.||||||||.|||||.|||||
BPUM_3259___y 747 ATTAAT-----GGATGCGAAAACACCTGGACACTTTGTAAATGGTTTTGC 791
BSNT_05472___ 792 CGCAAACGACGCTTCTTCTACTTTGAATATATGGAAACGTGTAAAAGAAA 841
.|||||.|||||.||.|||||.|||||.||.|||||.|||||.|||||||
BPUM_3259___y 792 GGCAAATGACGCATCATCTACATTGAACATTTGGAAGCGTGTGAAAGAAA 841
BSNT_05472___ 842 TCGGTTACCCGACCGATGATCCGATCATCATCATGAACTGCCGCGCAGAC 891
|.||.||.||.||.|||||.|||||.||.||||||||||||||.||.||.
BPUM_3259___y 842 TTGGATATCCAACAGATGAACCGATTATTATCATGAACTGCCGTGCGGAT 891
BSNT_05472___ 892 CGTGTCGATCGGACACAGCAATTCGCAAATGACGTATTGCCTTATATTGA 941
|||||.|||||.||....||.||.||..|.||.|||.|.|||||||||||
BPUM_3259___y 892 CGTGTAGATCGAACGATCCAGTTTGCGGAGGATGTACTTCCTTATATTGA 941
BSNT_05472___ 942 AGCAAGTGAACTGATCTTAATCGGTGAAACAACAGAACCGATCGTAAAAG 991
|||||||||.||..|.|||||.||||||||||||||.||.||.|||||.|
BPUM_3259___y 942 AGCAAGTGATCTCGTTTTAATTGGTGAAACAACAGATCCAATTGTAAAGG 991
BSNT_05472___ 992 CCTATGAAGAAGGCAAAATTCCTGCAGACAAACTGCATGATCTAGAGTAT 1041
|.|||||.||.||.||||||||.||.|||.|..|.||..|.||.||.|||
BPUM_3259___y 992 CATATGAGGATGGAAAAATTCCGGCTGACCACTTACACAACCTTGAATAT 1041
BSNT_05472___ 1042 AAGTCAACAGATGAAATTATGGA-ATTGTTAAAGAAAAGAATGCACAACC 1090
.|.||.|||||.|||||||||.| ||..||.||.||||| .|.||.||.|
BPUM_3259___y 1042 CAATCTACAGAAGAAATTATGAACATGCTTGAAAAAAAG-CTTCATAATC 1090
BSNT_05472___ 1091 GTGTCATATATGGCGTCGGCAATATTCATGGTGCCGCAGAGCCTTTAATT 1140
|.||..|.|||||.|||||||||||||||||||||||.||.||.|||||.
BPUM_3259___y 1091 GAGTGGTTTATGGAGTCGGCAATATTCATGGTGCCGCTGAACCGTTAATC 1140
BSNT_05472___ 1141 GAAAAAATCCACGAATACAAGGTTAAGCAGCTCGTAAGCTAG 1182
||||||||.||.||||||||..||||||||||.||.||||||
BPUM_3259___y 1141 GAAAAAATTCAAGAATACAAAATTAAGCAGCTTGTCAGCTAG 1182
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