Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05465 and BPUM_3253
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:06
# Commandline: needle
# -asequence dna-align/BSNT_05465___ywtF.1.24716.seq
# -bsequence dna-align/BPUM_3253___ywtF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05465___ywtF-BPUM_3253___ywtF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05465___ywtF-BPUM_3253___ywtF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05465___ywtF
# 2: BPUM_3253___ywtF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1035
# Identity: 654/1035 (63.2%)
# Similarity: 654/1035 (63.2%)
# Gaps: 117/1035 (11.3%)
# Score: 1853.5
#
#
#=======================================
BSNT_05465___ 1 ATGGAGGAACGATTACAACACAAGAAGAAA-----AAGAGA-----CGTC 40
|||||..|| .|||||||.|| |||.|| |||.
BPUM_3253___y 1 ATGGATCAA----------TCAAGAAGCAAACGCCAAGGGAAAAAGCGTT 40
BSNT_05465___ 41 TGAAAAAATGGGTGAAATTCACAATCGGTTTGT--TTGCTATTCTAATTA 88
|.|||...|||||||||.|||| ||..|||.| |.|.|||||| .|||
BPUM_3253___y 41 TAAAACCGTGGGTGAAAGTCAC--TCTATTTATAGTCGGTATTCT-TTTA 87
BSNT_05465___ 89 -TCGTAACTGGTTCAATTGGTAC---CTATGCTTA-TATAAAGTTGAACA 133
|...|||.|.||| ||..|| ||||||.|| ||.|||| |||..|
BPUM_3253___y 88 CTGACAACCGCTTC---TGTCACAGGCTATGCCTACTACAAAG-TGACTA 133
BSNT_05465___ 134 ATGCGTCAAAACAAGCACATATTGATCTAAATGAAAAT------GGTCAA 177
..||..|||||.|||||||..| ||| |..|.|| |.||||
BPUM_3253___y 134 GCGCTGCAAAAAAAGCACAAGT--ATC----TTTAGATCGCGGCGCTCAA 177
BSNT_05465___ 178 TCCGTTAAACGTATCAAAGAATTTGATCCGAAAAAAGACTCATTTACTGT 227
||.||.|||||.||..|||.|||.|||||....||||||...|||.||||
BPUM_3253___y 178 TCTGTCAAACGGATTGAAGCATTCGATCCTGGGAAAGACAGCTTTTCTGT 227
BSNT_05465___ 228 ATTACTTTTAGGAATTGATTCA--AGAAATTCCAAAGGTGAGACGGTTGA 275
.|||.|..|.||.||||| || ||| || .|||||.||.||..|
BPUM_3253___y 228 CTTATTGCTTGGTATTGA--CAGCAGA----CC--GGGTGAAACAGTGAA 269
BSNT_05465___ 276 CGATGCTCGAAGTGACGCTAATGTCTTAGTTACCTTTAATCGAAAAAACA 325
..|.||.|||||.||.||.|..|||||||..|||.|.|||||.|.|||.|
BPUM_3253___y 270 ACAAGCACGAAGCGATGCGATGGTCTTAGCAACCGTCAATCGTACAAATA 319
BSNT_05465___ 326 AATCAGCAACAATGTTAAGTATACCGAGAGATTCTTATGTTAACATCCCT 375
|..|.|.||.|.|.|||||.||.||.||.||.||.||.||.||.||.||.
BPUM_3253___y 320 AGACCGTAAAATTATTAAGCATTCCAAGGGACTCATACGTGAATATTCCA 369
BSNT_05465___ 376 GGTTATGGATATGATAAATTTACACATGCCCATGCATATGGAG-----GA 420
||..||||.|||||.|||.||||||||||.||.||||.|||.| ||
BPUM_3253___y 370 GGGCATGGCTATGACAAAATTACACATGCACACGCATTTGGCGGTGCAGA 419
BSNT_05465___ 421 GTAAAACTCTCGGCGAAA--ACAATTGAAAACCTTCTAGATATTCCAGTA 468
.|.||.|| .|| |||.|.|||||..|.||||||||||||||.
BPUM_3253___y 420 TTTAACCT-------TAAGTACAGTAGAAAATTTACTAGATATTCCAGTT 462
BSNT_05465___ 469 GATTATGTAATAGAAAGTAATTTTGACGCTTTTAAAGATGTTGTGGATGA 518
||||.|||.||..||||||||||..|.||.||||||||..|.||..||||
BPUM_3253___y 463 GATTTTGTGATCCAAAGTAATTTCAAAGCATTTAAAGAGATCGTTAATGA 512
BSNT_05465___ 519 ATTAAATGGAGTTAGTATAAATGTAAAAAATGAAAAAATAGTTAATCAAA 568
|.||||.||.|||..|||.||.||.||..||||..|..|.||.||.||..
BPUM_3253___y 513 ACTAAACGGGGTTTCTATTAACGTGAAGGATGATTATGTCGTCAAACAGG 562
BSNT_05465___ 569 TTAAAAAAGATACAAAAGGAAAAGTCACA--TTAAAAACTGGCGTTCAAA 616
||..|||||||||||||||.||.|| ||| || .||||.||...|||.|
BPUM_3253___y 563 TTCTAAAAGATACAAAAGGTAAGGT-ACAGCTT-CAAACAGGAACTCATA 610
BSNT_05465___ 617 CACTAAACGGTGAAGAAGCACTAGCTTATGTAAGGACACGTAAAGCTGAT 666
|.|||.|||||||..||||.||.||.|||||.||.|||||.|||||.|||
BPUM_3253___y 611 CGCTAGACGGTGATCAAGCTCTTGCGTATGTGAGAACACGAAAAGCAGAT 660
BSNT_05465___ 667 ACCGATTTTCAACGCGGTCAAAGACAGATGGAAGTCCTAAATGCCATCAT 716
|.||||||...|||.||.||..|.||.||||||||..||||.|||||..|
BPUM_3253___y 661 AGCGATTTATTACGTGGACAGCGTCAAATGGAAGTATTAAAAGCCATTTT 710
BSNT_05465___ 717 AAAAAAATCTAAATCATTAAGCTCAATACCAGCATATGATGATATCGTTG 766
..|.|||||.|||||.||||..||.||.||..|||||||..|||||.|||
BPUM_3253___y 711 TGATAAATCAAAATCGTTAACGTCTATTCCGTCATATGACAATATCATTG 760
BSNT_05465___ 767 ATAGTTTAGGGGAAAATTTAAAGATGAATTTATCTTTAAATGATGCAA-- 814
|||...|.||.||.|||.|...||..| |.||||..||||...||
BPUM_3253___y 761 ATACACTTGGTGATAATGTCGCGACCA----ACCTTTCGATGAAAGAACT 806
BSNT_05465___ 815 --TCGGTTTATTTCCTTTTATAACTTCTTTAAAATCAGTTGATACTGAAC 862
||||..|.||.||..||.||||.||.||.|||||..|.|||||....|
BPUM_3253___y 807 AGTCGGGCTTTTCCCGCTTCTAACGTCATTGAAATCGATGGATACCATTC 856
BSNT_05465___ 863 AACTTACCGGTTCTGACATGTATCTCTACAGCTCTCGTGAGCGAAAAAAA 912
|.||.|..||.||||| .||| .|||.|||...|
BPUM_3253___y 857 AGCTGAAAGGCTCTGA---------TTAC---------CAGCCAAATGGA 888
BSNT_05465___ 913 CTATATTATTTGAAACTTGATAGTGAAA---AGCTAGAAGAAGTCAAAAC 959
.|.||||||||..||.|.|| |.||| |||||.|.|||||.||.||
BPUM_3253___y 889 GTTTATTATTTCCAATTGGA---TCAAAATCAGCTAAACGAAGTGAAGAC 935
BSNT_05465___ 960 CGAACTAAAAAA------TGACATA-GATAACTGA 987
.|||.|.||.|| |||..|| .||||
BPUM_3253___y 936 TGAATTGAAGAAGCAGCTTGAATTATCATAA---- 966
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