Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05464 and BPUM_3252

See Amino acid alignment / Visit BSNT_05464 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:06
# Commandline: needle
#    -asequence dna-align/BSNT_05464.1.24716.seq
#    -bsequence dna-align/BPUM_3252___ywtG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05464-BPUM_3252___ywtG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05464-BPUM_3252___ywtG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05464
# 2: BPUM_3252___ywtG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1400
# Identity:     891/1400 (63.6%)
# Similarity:   891/1400 (63.6%)
# Gaps:         223/1400 (15.9%)
# Score: 2938.0
# 
#
#=======================================

BSNT_05464         1 ATGAAAAAGCAGTC-AAATATATGGCTTTATTTTTTCGGAGCTCTTGGAG     49
                     ||||||||    || ||||...|||||||||||.|||||.||.|||||.|
BPUM_3252___y      1 ATGAAAAA----TCGAAATGGGTGGCTTTATTTCTTCGGCGCACTTGGCG     46

BSNT_05464        50 GCGCGTTATATGGCTATGATACCGGAGTGATTTCCGGAGCTATTTTATTT     99
                     ||||.|||||||||||||||||.||.||.|||||.||.||.||.||||||
BPUM_3252___y     47 GCGCCTTATATGGCTATGATACAGGTGTCATTTCTGGCGCCATCTTATTT     96

BSNT_05464       100 ATGAAAAAGGAGTTAGGATTGAATGCGTTTACAGAAGGTCTTGTTGTCAG    149
                     ||||||.||||.|||||.||.||.||.||||||||.||.|||||||||||
BPUM_3252___y     97 ATGAAAGAGGATTTAGGGTTAAACGCATTTACAGAGGGACTTGTTGTCAG    146

BSNT_05464       150 CTCCTTACTGGTTGGGGCGATACTAGG---CTCGGGAGCGGCCGGCAAGC    196
                     |||..|..|..|.||.|||||.||.||   |||...|   .|.||.||||
BPUM_3252___y    147 CTCGATTTTAATCGGAGCGATGCTCGGTTCCTCTTTA---TCTGGAAAGC    193

BSNT_05464       197 TGACTGACCGTTTCGGAAGAAAAAAAGCAATTATGACGGCCGCGCTGTTG    246
                     ||||.||.|..||.||..||||||||||.||.||..|.||.|||.|.||.
BPUM_3252___y    194 TGACAGATCAATTTGGGCGAAAAAAAGCCATCATCGCCGCAGCGATTTTA    243

BSNT_05464       247 TTTTGTATAGGCGGTCTTGGTGTGGCACTGGCCCCAAATACGGGAGTCAT    296
                     |||..|||.||.||..|||||...||.||.|||||.|||||||.|||.||
BPUM_3252___y    244 TTTATTATCGGGGGATTTGGTACAGCCCTTGCCCCGAATACGGAAGTGAT    293

BSNT_05464       297 GGTGCTGTTTCGCATCATTTTGGGACTTGCAGTCGGAACATCGACGACGA    346
                     |||..||||.||.||..|..|.||.|||||.|||||....|||||.||||
BPUM_3252___y    294 GGTCTTGTTCCGAATTGTGCTAGGGCTTGCTGTCGGGTGCTCGACAACGA    343

BSNT_05464       347 TCGTGCCGCTTTATTTATCTGAACTGGCGCC-AAAGCATAAGCGCGGGGC    395
                     |.||.||..|.||||||||||||||.||.|| ||.|.||.| ||.||.||
BPUM_3252___y    344 TTGTTCCATTATATTTATCTGAACTCGCTCCGAAGGAATCA-CGAGGAGC    392

BSNT_05464       396 GCTGTCATCACTGAATCAGCTGATGATCACGGTCGGCATCCTTCTTTCTT    445
                     .|||||.|||.|.||.||.||.||||||||..|.||.||.||.||..|.|
BPUM_3252___y    393 ACTGTCCTCATTAAACCAACTCATGATCACATTTGGTATTCTACTCGCCT    442

BSNT_05464       446 ACATTGTCAATTACATATTTGCCGATGCCGAAGCGTGGCGCTGGATGCTT    495
                     |.|||||.||||||...||.||.|||||.||.||.||||||..|||||||
BPUM_3252___y    443 ATATTGTGAATTACGCTTTAGCGGATGCAGAGGCATGGCGCCTGATGCTT    492

BSNT_05464       496 GGATTGGCTGCTGTGCCGTCATTGCTCTTGCTCAT-TGGCATTTTGTTTA    544
                     |||.|.||.|.|||.||.||..|||| ||..|.|| |||.|||.||||||
BPUM_3252___y    493 GGAATTGCGGTTGTTCCTTCTGTGCT-TTTATTATGTGGGATTATGTTTA    541

BSNT_05464       545 TGCCGGAGAGCCCGCGCTGGCTGTT----CACGAATGGCGAAGAA-----    585
                     ||||.||.||.||.|||||||||||    |    |||||.|.|.|     
BPUM_3252___y    542 TGCCTGAAAGTCCCCGCTGGCTGTTTGTCC----ATGGCCAGGCAGACTG    587

BSNT_05464       586 AGCAAAGCGAAGA-ACATT--CT----TGA-AAAGTTGCGT-GGCACAAC    626
                     .||||    |||| |.|||  ||    ||| |||   |.|| .|||    
BPUM_3252___y    588 TGCAA----AAGAGATATTAGCTAAACTGAGAAA---GAGTAAGCA----    626

BSNT_05464       627 AGATATTGATCAGGAAA-TACATGATATAAAAGAAGCGGAAAAGCAGGAT    675
                     |||..|.||..|.|||| |.|| ||.|||.||.|.||.||||...|.||.
BPUM_3252___y    627 AGAAGTGGAAGAAGAAATTTCA-GACATACAACAGGCAGAAAGTGAAGAA    675

BSNT_05464       676 GAAGGCGGCCTGAAGGAGCTGTTCGATCCATGGGTGCGCCCAGCCCTGAT    725
                     .|||||||..|.|||||..|.||.||.|||||||||||||||||..|.||
BPUM_3252___y    676 AAAGGCGGTTTTAAGGAATTATTTGAGCCATGGGTGCGCCCAGCATTAAT    725

BSNT_05464       726 TGCCGGTTTGGGATTGGCATTTTTGCAGCAATTTATCGGAACGAATACGA    775
                     |||.|||.|.||..|.||.|||||||||||.||||||||.||.|||||||
BPUM_3252___y    726 TGCTGGTGTCGGTCTTGCCTTTTTGCAGCAGTTTATCGGTACCAATACGA    775

BSNT_05464       776 TCATCTACTATGCGCCAAAAACCTTTACAAACGTCGGATTCGGAAACTCC    825
                     |.||.||||||||.||||||||.||.||||.|||.||.||.||.||.||.
BPUM_3252___y    776 TTATTTACTATGCACCAAAAACATTCACAAGCGTTGGTTTTGGCAATTCA    825

BSNT_05464       826 GCTTCAATTTTAGGAACGGTCGGAATCGGCACAGTCAATGTTGTCATGAC    875
                     ||..|.|||||||||||.||||||||.||..||||.|||||.||||||||
BPUM_3252___y    826 GCGGCCATTTTAGGAACCGTCGGAATTGGGGCAGTGAATGTCGTCATGAC    875

BSNT_05464       876 ATTAGTAGCGATTAAAATCATCGACAAGATTGGAAG-AAAGCCGTTACTG    924
                     .||.||.|||||||||||.||.|||....|.||..| |||| ||.|.||.
BPUM_3252___y    876 GTTTGTGGCGATTAAAATTATTGACCGTGTAGGGCGTAAAG-CGCTGCTC    924

BSNT_05464       925 CTATTCGGGAATGCGGGAATGGTGATCAGCTTGATCGTTCTCGCTTTAGT    974
                     .||||.||||||||.||.|||||..|.||.||.||.||.||..|..|.||
BPUM_3252___y    925 TTATTTGGGAATGCTGGCATGGTCCTAAGTTTAATTGTCCTGTCAGTGGT    974

BSNT_05464       975 AAATCTCTTTTTCGA-----TAACACTCCGGCTGCCTCATGGACGACCGT   1019
                     .||||..||||||||     .||||     ||.||...||||||.||..|
BPUM_3252___y    975 CAATCGATTTTTCGAAGGATCAACA-----GCGGCAGGATGGACAACTAT   1019

BSNT_05464      1020 CATTTGTTTAGGCGTGTTTATCGTTGTCTTTGCGGTCAGCTGGGGACCGG   1069
                     .|||||||||||..|.|||||.||..|||||||.|||||||||||.||.|
BPUM_3252___y   1020 TATTTGTTTAGGTCTCTTTATTGTCATCTTTGCTGTCAGCTGGGGTCCTG   1069

BSNT_05464      1070 TTGTGTGGGTGATGCTTCCTGAATTGTTCCTGCTTCATGTCAGAGGAATC   1119
                     |.||.|||||.|||||||||||..||||||...|.||||||.||||.|||
BPUM_3252___y   1070 TCGTTTGGGTCATGCTTCCTGAGCTGTTCCCAGTACATGTCCGAGGGATC   1119

BSNT_05464      1120 GGGACCGGTGTTTCGACC--------------------------------   1137
                     ||.||.|||||.||.|||                                
BPUM_3252___y   1120 GGTACAGGTGTCTCTACCTTCCTCCTTCATACAGGAAATTTAATCATCTC   1169

BSNT_05464      1138 ------------------------AGCGATGGGAATCAGTTATTTATTCC   1163
                                             .||||||||.||||||.||.|.||||
BPUM_3252___y   1170 ACTTACATTCCCAACTTTACTAAGCGCGATGGGTATCAGTAATCTTTTCC   1219

BSNT_05464      1164 TGATTTATGCCGCGATCG--GTATCATGGCG--TTCTTATTTGT------   1203
                     |.||||||||.|..||||  |||    ||||  |||||||||||      
BPUM_3252___y   1220 TCATTTATGCGGTCATCGGCGTA----GGCGCCTTCTTATTTGTGAAATA   1265

BSNT_05464      1204 --------------------------------------------CCGATT   1209
                                                                 .|||||
BPUM_3252___y   1266 TATGGTGACTGAAACGAAAGGGAAAAGTCTTGAAGAAATTGAAGACGATT   1315

BSNT_05464      1210 TAA-----------------------------------------------   1212
                     |||                                               
BPUM_3252___y   1316 TAAAAAAGAGGAATCGTGCCGTCACAGGTGACGAAGGAAAAACGGTGTGA   1365


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