Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05464 and BPUM_3252
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:06
# Commandline: needle
# -asequence dna-align/BSNT_05464.1.24716.seq
# -bsequence dna-align/BPUM_3252___ywtG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05464-BPUM_3252___ywtG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05464-BPUM_3252___ywtG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05464
# 2: BPUM_3252___ywtG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1400
# Identity: 891/1400 (63.6%)
# Similarity: 891/1400 (63.6%)
# Gaps: 223/1400 (15.9%)
# Score: 2938.0
#
#
#=======================================
BSNT_05464 1 ATGAAAAAGCAGTC-AAATATATGGCTTTATTTTTTCGGAGCTCTTGGAG 49
|||||||| || ||||...|||||||||||.|||||.||.|||||.|
BPUM_3252___y 1 ATGAAAAA----TCGAAATGGGTGGCTTTATTTCTTCGGCGCACTTGGCG 46
BSNT_05464 50 GCGCGTTATATGGCTATGATACCGGAGTGATTTCCGGAGCTATTTTATTT 99
||||.|||||||||||||||||.||.||.|||||.||.||.||.||||||
BPUM_3252___y 47 GCGCCTTATATGGCTATGATACAGGTGTCATTTCTGGCGCCATCTTATTT 96
BSNT_05464 100 ATGAAAAAGGAGTTAGGATTGAATGCGTTTACAGAAGGTCTTGTTGTCAG 149
||||||.||||.|||||.||.||.||.||||||||.||.|||||||||||
BPUM_3252___y 97 ATGAAAGAGGATTTAGGGTTAAACGCATTTACAGAGGGACTTGTTGTCAG 146
BSNT_05464 150 CTCCTTACTGGTTGGGGCGATACTAGG---CTCGGGAGCGGCCGGCAAGC 196
|||..|..|..|.||.|||||.||.|| |||...| .|.||.||||
BPUM_3252___y 147 CTCGATTTTAATCGGAGCGATGCTCGGTTCCTCTTTA---TCTGGAAAGC 193
BSNT_05464 197 TGACTGACCGTTTCGGAAGAAAAAAAGCAATTATGACGGCCGCGCTGTTG 246
||||.||.|..||.||..||||||||||.||.||..|.||.|||.|.||.
BPUM_3252___y 194 TGACAGATCAATTTGGGCGAAAAAAAGCCATCATCGCCGCAGCGATTTTA 243
BSNT_05464 247 TTTTGTATAGGCGGTCTTGGTGTGGCACTGGCCCCAAATACGGGAGTCAT 296
|||..|||.||.||..|||||...||.||.|||||.|||||||.|||.||
BPUM_3252___y 244 TTTATTATCGGGGGATTTGGTACAGCCCTTGCCCCGAATACGGAAGTGAT 293
BSNT_05464 297 GGTGCTGTTTCGCATCATTTTGGGACTTGCAGTCGGAACATCGACGACGA 346
|||..||||.||.||..|..|.||.|||||.|||||....|||||.||||
BPUM_3252___y 294 GGTCTTGTTCCGAATTGTGCTAGGGCTTGCTGTCGGGTGCTCGACAACGA 343
BSNT_05464 347 TCGTGCCGCTTTATTTATCTGAACTGGCGCC-AAAGCATAAGCGCGGGGC 395
|.||.||..|.||||||||||||||.||.|| ||.|.||.| ||.||.||
BPUM_3252___y 344 TTGTTCCATTATATTTATCTGAACTCGCTCCGAAGGAATCA-CGAGGAGC 392
BSNT_05464 396 GCTGTCATCACTGAATCAGCTGATGATCACGGTCGGCATCCTTCTTTCTT 445
.|||||.|||.|.||.||.||.||||||||..|.||.||.||.||..|.|
BPUM_3252___y 393 ACTGTCCTCATTAAACCAACTCATGATCACATTTGGTATTCTACTCGCCT 442
BSNT_05464 446 ACATTGTCAATTACATATTTGCCGATGCCGAAGCGTGGCGCTGGATGCTT 495
|.|||||.||||||...||.||.|||||.||.||.||||||..|||||||
BPUM_3252___y 443 ATATTGTGAATTACGCTTTAGCGGATGCAGAGGCATGGCGCCTGATGCTT 492
BSNT_05464 496 GGATTGGCTGCTGTGCCGTCATTGCTCTTGCTCAT-TGGCATTTTGTTTA 544
|||.|.||.|.|||.||.||..|||| ||..|.|| |||.|||.||||||
BPUM_3252___y 493 GGAATTGCGGTTGTTCCTTCTGTGCT-TTTATTATGTGGGATTATGTTTA 541
BSNT_05464 545 TGCCGGAGAGCCCGCGCTGGCTGTT----CACGAATGGCGAAGAA----- 585
||||.||.||.||.||||||||||| | |||||.|.|.|
BPUM_3252___y 542 TGCCTGAAAGTCCCCGCTGGCTGTTTGTCC----ATGGCCAGGCAGACTG 587
BSNT_05464 586 AGCAAAGCGAAGA-ACATT--CT----TGA-AAAGTTGCGT-GGCACAAC 626
.|||| |||| |.||| || ||| ||| |.|| .|||
BPUM_3252___y 588 TGCAA----AAGAGATATTAGCTAAACTGAGAAA---GAGTAAGCA---- 626
BSNT_05464 627 AGATATTGATCAGGAAA-TACATGATATAAAAGAAGCGGAAAAGCAGGAT 675
|||..|.||..|.|||| |.|| ||.|||.||.|.||.||||...|.||.
BPUM_3252___y 627 AGAAGTGGAAGAAGAAATTTCA-GACATACAACAGGCAGAAAGTGAAGAA 675
BSNT_05464 676 GAAGGCGGCCTGAAGGAGCTGTTCGATCCATGGGTGCGCCCAGCCCTGAT 725
.|||||||..|.|||||..|.||.||.|||||||||||||||||..|.||
BPUM_3252___y 676 AAAGGCGGTTTTAAGGAATTATTTGAGCCATGGGTGCGCCCAGCATTAAT 725
BSNT_05464 726 TGCCGGTTTGGGATTGGCATTTTTGCAGCAATTTATCGGAACGAATACGA 775
|||.|||.|.||..|.||.|||||||||||.||||||||.||.|||||||
BPUM_3252___y 726 TGCTGGTGTCGGTCTTGCCTTTTTGCAGCAGTTTATCGGTACCAATACGA 775
BSNT_05464 776 TCATCTACTATGCGCCAAAAACCTTTACAAACGTCGGATTCGGAAACTCC 825
|.||.||||||||.||||||||.||.||||.|||.||.||.||.||.||.
BPUM_3252___y 776 TTATTTACTATGCACCAAAAACATTCACAAGCGTTGGTTTTGGCAATTCA 825
BSNT_05464 826 GCTTCAATTTTAGGAACGGTCGGAATCGGCACAGTCAATGTTGTCATGAC 875
||..|.|||||||||||.||||||||.||..||||.|||||.||||||||
BPUM_3252___y 826 GCGGCCATTTTAGGAACCGTCGGAATTGGGGCAGTGAATGTCGTCATGAC 875
BSNT_05464 876 ATTAGTAGCGATTAAAATCATCGACAAGATTGGAAG-AAAGCCGTTACTG 924
.||.||.|||||||||||.||.|||....|.||..| |||| ||.|.||.
BPUM_3252___y 876 GTTTGTGGCGATTAAAATTATTGACCGTGTAGGGCGTAAAG-CGCTGCTC 924
BSNT_05464 925 CTATTCGGGAATGCGGGAATGGTGATCAGCTTGATCGTTCTCGCTTTAGT 974
.||||.||||||||.||.|||||..|.||.||.||.||.||..|..|.||
BPUM_3252___y 925 TTATTTGGGAATGCTGGCATGGTCCTAAGTTTAATTGTCCTGTCAGTGGT 974
BSNT_05464 975 AAATCTCTTTTTCGA-----TAACACTCCGGCTGCCTCATGGACGACCGT 1019
.||||..|||||||| .|||| ||.||...||||||.||..|
BPUM_3252___y 975 CAATCGATTTTTCGAAGGATCAACA-----GCGGCAGGATGGACAACTAT 1019
BSNT_05464 1020 CATTTGTTTAGGCGTGTTTATCGTTGTCTTTGCGGTCAGCTGGGGACCGG 1069
.|||||||||||..|.|||||.||..|||||||.|||||||||||.||.|
BPUM_3252___y 1020 TATTTGTTTAGGTCTCTTTATTGTCATCTTTGCTGTCAGCTGGGGTCCTG 1069
BSNT_05464 1070 TTGTGTGGGTGATGCTTCCTGAATTGTTCCTGCTTCATGTCAGAGGAATC 1119
|.||.|||||.|||||||||||..||||||...|.||||||.||||.|||
BPUM_3252___y 1070 TCGTTTGGGTCATGCTTCCTGAGCTGTTCCCAGTACATGTCCGAGGGATC 1119
BSNT_05464 1120 GGGACCGGTGTTTCGACC-------------------------------- 1137
||.||.|||||.||.|||
BPUM_3252___y 1120 GGTACAGGTGTCTCTACCTTCCTCCTTCATACAGGAAATTTAATCATCTC 1169
BSNT_05464 1138 ------------------------AGCGATGGGAATCAGTTATTTATTCC 1163
.||||||||.||||||.||.|.||||
BPUM_3252___y 1170 ACTTACATTCCCAACTTTACTAAGCGCGATGGGTATCAGTAATCTTTTCC 1219
BSNT_05464 1164 TGATTTATGCCGCGATCG--GTATCATGGCG--TTCTTATTTGT------ 1203
|.||||||||.|..|||| ||| |||| |||||||||||
BPUM_3252___y 1220 TCATTTATGCGGTCATCGGCGTA----GGCGCCTTCTTATTTGTGAAATA 1265
BSNT_05464 1204 --------------------------------------------CCGATT 1209
.|||||
BPUM_3252___y 1266 TATGGTGACTGAAACGAAAGGGAAAAGTCTTGAAGAAATTGAAGACGATT 1315
BSNT_05464 1210 TAA----------------------------------------------- 1212
|||
BPUM_3252___y 1316 TAAAAAAGAGGAATCGTGCCGTCACAGGTGACGAAGGAAAAACGGTGTGA 1365
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