Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05459 and BPUM_3248
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:05
# Commandline: needle
# -asequence dna-align/BSNT_05459___gerBA.1.24716.seq
# -bsequence dna-align/BPUM_3248___gerBA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05459___gerBA-BPUM_3248___gerBA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05459___gerBA-BPUM_3248___gerBA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05459___gerBA
# 2: BPUM_3248___gerBA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1649
# Identity: 953/1649 (57.8%)
# Similarity: 953/1649 (57.8%)
# Gaps: 379/1649 (23.0%)
# Score: 2388.0
#
#
#=======================================
BSNT_05459___ 1 ATGCAAA-TCGACTCTGATCTCCAACGCAATATAGAGACATTGAAAA--- 46
|||.||| ||| |.|..|||...||||||.|.|..|.|..|
BPUM_3248___g 1 ATGAAAAGTCG-------TATTGAACAAGATATAGCGTCCGTCATCAAGC 43
BSNT_05459___ 47 -----AAAAGTT-----GGGACAAAACGACGATATCATGTTTTATACGTT 86
||.||.| |||| |||..||.||||||.||||..|..|.||
BPUM_3248___g 44 GCGTCAAGAGCTTTGCCGGGA-AAAGTGATGATATCGTGTTCCACTCATT 92
BSNT_05459___ 87 TTCATTTGGAGGCAGCAGACAGAAA-----GCGTGCCTACTGTATATTGA 131
||||||||| .|...|||..| ||.||.||..||||..||||
BPUM_3248___g 93 TTCATTTGG-----TCCTTCAGCTATCTCTGCATGTCTCATGTACGTTGA 137
BSNT_05459___ 132 CGGTTTGACAGA----------------AAATAAACTTCTGGCGCAATAC 165
.||..|.||||| |||.|||
BPUM_3248___g 138 AGGACTCACAGAGTTTGAGATGCTTTCCAAACAAA--------------- 172
BSNT_05459___ 166 GTCATTTCTCCATTACAAAAAGAAGCGTTAGACAAAAAAGAGGGCTTGAT 215
|||||||.||..|.|||||.||| ||.||.|..|..|||| |||||
BPUM_3248___g 173 -TCATTTCACCCATGCAAAAGGAA---TTGGATATTACGGAGG--TTGAT 216
BSNT_05459___ 216 TGAAGATTTATCCGCTTTCTTTTTCGGCTATCATC-ACAATGTAATCTCT 264
..|.||.||| ||.|||||.| .|| |.||.|| |||.|
BPUM_3248___g 217 -----CCTAATACGC------TTCCGGCTCT-GTCTAAAACGT--TCTTT 252
BSNT_05459___ 265 ACTAT---AAAGGAAATACAGCAGCTTATTTTTTCCGGA--CATGCCATC 309
...|| |||.||..|.|.|.||..||| || |.|||||||
BPUM_3248___g 253 GGCATCCAAAATGACGTGCTGGAGGATAT--------GAACCTTGCCATC 294
BSNT_05459___ 310 TTGCTG-GCCGATGGATACAGCGG-AGGGCTGGCTTTT-------GAT-- 348
| ||.|.| |||.||||| |||||| .|||| |||
BPUM_3248___g 295 -----GAGCAGTT--ATATAGCGGCAGGGCT--ATTTTATTTGTAGATGG 335
BSNT_05459___ 349 ------ACGAAAACA-TTCATGACGCGCGCCTTTGAA--GAACCTTCCTC 389
|| ||.|| || ||||.|| || |||||||..||
BPUM_3248___g 336 TGCAGCAC--AAGCACTT------GCGCTCC----AAACGAACCTTTTTC 373
BSNT_05459___ 390 TGAAAT-------CGTAGAA----CGCGGTCCGAA--------------- 413
||| .|||||| |||..||.|||
BPUM_3248___g 374 ---AATTTAGAGAAGTAGAAGAGCCGCAATCGGAAGTCCTTGTAAGAGGG 420
BSNT_05459___ 414 -----GATTGGCTTTATTGAAAATCTCCGGACAAACACGGCGCTTTTA-- 456
|||.||.|||||||||||.||....|.||||||||| ||||
BPUM_3248___g 421 CCTCGGATCGGTTTTATTGAAAACCTTGAAAAAAACACGGC---TTTAAT 467
BSNT_05459___ 457 -CGAGAGCGGACGAGTGACCCTAATCTCATCAT--AAAAG--AAATGACG 501
||.||||||.|.|..|||||.||.||..|||| ||||| .||||
BPUM_3248___g 468 TCGTGAGCGGGCAAACGACCCAAACCTTGTCATTCAAAAGGTGAATG--- 514
BSNT_05459___ 502 ATAG------GCAA-AAGGACAAAAAAAAAGATAGCTGTCGCA------- 537
||| |||| ||| ||| |.||||
BPUM_3248___g 515 -TAGGTACTCGCAATAAG----------AAG------GCCGCAGCCCTTG 547
BSNT_05459___ 538 TATA--TTCAGGATATTG----CCCCTGATTATGTCGTAAAAGAAGTGTT 581
|||| |||..||||||| .|||..|||| |||.|||| ||||
BPUM_3248___g 548 TATACGTTCGTGATATTGTTGATCCCAAATTA----GTAGAAGA--TGTT 591
BSNT_05459___ 582 TAA--ACG-----CCTAAAATCCATCATAACAGATGATTTGCCGGAATCA 624
|.| ||| ||.|| ||.|.||..|||||..|.||.|||.|.
BPUM_3248___g 592 TTATCACGGATGTCCGAA-----ATTAAAATGGATGACATCCCTGAAACC 636
BSNT_05459___ 625 GGC-ACACTTGAGCAGCTCATTGAAGATGAACC-TTTTTCGATCTTTCCG 672
||| |.| ||||.||.||.|||||.|| .|.|| ..|.||.||.||||||
BPUM_3248___g 637 GGCTATA-TTGAACAACTGATTGAGGA-CAGCCACATCTCCATTTTTCCG 684
BSNT_05459___ 673 ACGATCTTAAGTACAGAGCGTCCAGATCGTGTAGAAAGC-TCATTGTTGG 721
..|||...||.||||||.||||||||.||.|| ||..|| ||..||.|.|
BPUM_3248___g 685 CAGATTCAAAATACAGAACGTCCAGACCGGGT-GATTGCATCTGTGCTTG 733
BSNT_05459___ 722 AAGGCCGGGTTTCCATTTTGGTGGATGGCACGCCGTTTGCACTCGTTGTC 771
||||....||.||.|||||..|.||||||||.||.|||||||||.||.|.
BPUM_3248___g 734 AAGGGAAAGTATCGATTTTACTCGATGGCACTCCCTTTGCACTCATTTTA 783
BSNT_05459___ 772 CCCGCAACG-----------CTTGATGAATTTATTCATTCACCGGATGAT 810
| |||.| ||||||| ||.|||||.||.|||
BPUM_3248___g 784 C---CAATGACCTTTACAGCCTTGATG--------CAATCACCTGAAGAT 822
BSNT_05459___ 811 TACAGCCAGCGCTGGATTACAATGT----CACTTATTCGTTTGCTTCGTT 856
||....|||.|.||||.|| || |.|||.|.|||||.||.||||
BPUM_3248___g 823 TATTATCAGAGATGGACTA----GTGCGACTCTTTTACGTTTACTCCGTT 868
BSNT_05459___ 857 ATTCCAGCATC-CTGATT-----ACCATTTATTT-GCCGGGCTTATATAT 899
|| ||| |||.|| ||.||||.||| .|||||||| ||.||
BPUM_3248___g 869 AT------ATCGCTGTTTTGCTCACGATTTTTTTACCCGGGCTT-TACAT 911
BSNT_05459___ 900 TTCTCTCGTTTCCTT-----CCATACGGGGCTT-TTGCCGACGAGAATGG 943
|.|.||.||.| ||| ||| ||||| ||.||.||..|.||||
BPUM_3248___g 912 TGCACTTGTCT-CTTATCACCCA-----GGCTTATTACCAACACGGATGG 955
BSNT_05459___ 944 CTATTTCAATTGCAGGCAGCAGGCTGAATGTGCCCTTTCCGCCTTTTGTT 993
|..|..|.||.|||||||||.|.|.||||||.||.||.||.|||.|||||
BPUM_3248___g 956 CACTCACCATCGCAGGCAGCCGTCAGAATGTTCCGTTCCCTCCTGTTGTT 1005
BSNT_05459___ 994 GAAGCCTTTATTATGATATTTACGATAGAACTGATCCGGGAAGCCGGTTT 1043
||.||..||.|.|||...|||||||||||.|||.|.||||||||.||..|
BPUM_3248___g 1006 GAGGCGATTCTCATGTCTTTTACGATAGAGCTGCTGCGGGAAGCTGGACT 1055
BSNT_05459___ 1044 ACGGCTGCC-AAAGCCGATCGGACAGACGATTGGGCTTATTGGAGGCGTT 1092
.|||||||| |.|||| |||||.|||||.||||||||.|||||.||.||.
BPUM_3248___g 1056 TCGGCTGCCTAGAGCC-ATCGGGCAGACAATTGGGCTCATTGGCGGGGTC 1104
BSNT_05459___ 1093 GTCATCGGACAGGCAGCTGTGCAGGCGCAA-ATTGTCAGCGCACTGATGG 1141
.||||.||.||.||.|||||.||.|| ||| ||.|||||.||..|.||||
BPUM_3248___g 1105 ATCATTGGTCAAGCGGCTGTCCAAGC-CAATATCGTCAGTGCCTTAATGG 1153
BSNT_05459___ 1142 TCATTGTCGTTTCCGTTACGGCATTGGCGTCCTTTACCGTTCCTTCATAC 1191
|.|||.|.||.||..|.||||||.|.||...||||||.|..||.||.||.
BPUM_3248___g 1154 TGATTATTGTGTCGCTAACGGCACTCGCTGACTTTACGGCACCATCCTAT 1203
BSNT_05459___ 1192 GCCTTTAACTTTCCGCTGCGGATTATTCG---TATCGCAGCAATGATAAG 1238
|.|||||..||.||||||||.||..|.|| ||| .||.||..|.||
BPUM_3248___g 1204 GACTTTAGTTTCCCGCTGCGTATCTTGCGATTTAT---GGCCATTTTCAG 1250
BSNT_05459___ 1239 TGCAGC--TGTATTGGGCATGTATGGCGTCATCATG-GTCTTTCTGTTAG 1285
|.|||| ||| ||||| .|.||||||.|.|||||| || |.|.|.||.|
BPUM_3248___g 1251 TTCAGCGATGT-TTGGG-TTATATGGCTTAATCATGTGT-TATTTATTTG 1297
BSNT_05459___ 1286 TAATTGGCCATTTAATGCGTTTGAAAAGCTTTGGCCAGGATTACATTATT 1335
|..||.|.||.||.||||..||.||.|.|||||| ||
BPUM_3248___g 1298 TGCTTTGTCACTTGATGCAATTAAAGACCTTTGG--------------TT 1333
BSNT_05459___ 1336 CCGATAATGGCACAGCCCG---------GAC------AAGATTTGAAAGA 1370
..||..||..||| |||.| .|| .||||||.||.||
BPUM_3248___g 1334 TTGACTATTTCAC-GCCTGTTTTGTCTTCACCGTTTTCAGATTTAAAGGA 1382
BSNT_05459___ 1371 CACGATTATTCGCGT-TCCCACCCTATT------TTTAAAAAGAAGACCT 1413
.||| |||...||| |.||| ||| ||||||..| |||
BPUM_3248___g 1383 TACG--TATGTACGTCTTCCA----ATTGGGTTATTTAAATCG-AGA--- 1422
BSNT_05459___ 1414 ACCCGCAAA-GGCACAAAAGATAAAATC-----AGACAAAGGTGA---- 1452
|||.||| .||| ||||.|.|||||| |||| ||||.||
BPUM_3248___g 1423 --CCGAAAACAGCA-AAAATAAAAAATCTCAAAAGAC-AAGGAGATTAA 1467
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