Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04115 and BPUM_3242
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:39
# Commandline: needle
# -asequence dna-align/BSNT_04115.1.24716.seq
# -bsequence dna-align/BPUM_3242___ysnE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04115-BPUM_3242___ysnE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04115-BPUM_3242___ysnE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04115
# 2: BPUM_3242___ysnE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 496
# Identity: 263/496 (53.0%)
# Similarity: 263/496 (53.0%)
# Gaps: 146/496 (29.4%)
# Score: 764.0
#
#
#=======================================
BSNT_04115 0 -------------------------------------------------- 0
BPUM_3242___y 1 GTGATAGAAGACATGTACATTCAACAAGATACTCTCACAGATGGACAAAT 50
BSNT_04115 1 -------------------------------ATG---------TCCCCGC 10
||| |||||||
BPUM_3242___y 51 AGAGCAGCTGATTACCGCTCATTTAGAAGAAATGAAAAAGCATTCCCCGC 100
BSNT_04115 11 CGGAAAGCATCCATGCC------TTAGGTTTAGAGAAACTAAG--AGGCC 52
|.||||||||||||||| ||||.|..|..|||| ||| |||
BPUM_3242___y 101 CAGAAAGCATCCATGCCCTTCCGTTAGCTGAATTGAAA--AAGCAAGG-- 146
BSNT_04115 53 CTGGAATAACATTTTGGAGTGCATGGGAGGGTGATGAACTAGCCGGTTGC 102
|| |.|||.|.|||||||...||||.||.||.||.||....||.|||
BPUM_3242___y 147 -TG---TCACAGTGTGGAGTGTTCGGGATGGAGAGGAGCTTCTTGGCTGC 192
BSNT_04115 103 GGAGCGCTAAAAGAACTGGACAGCTG-GCACGGAGAAGTCAAATCAATGC 151
|||||..||||.||.|| |.||..|| .|||||.|||.|||||||.|||.
BPUM_3242___y 193 GGAGCATTAAAGGAGCT-GTCAAGTGATCACGGCGAAATCAAATCCATGA 241
BSNT_04115 152 GAACATCTGCATCACATTTAAGAAAAGGCGT-----------TGC-CAAA 189
|.||..|.||..|.|||.|..|||||||.|| ||| .||.
BPUM_3242___y 242 GGACTGCAGCTCCCCATATGCGAAAAGGTGTAGGAAGGTATATGCTGAAC 291
BSNT_04115 190 CAAGTTCTCCAGCATATCATTGAAGAAGCCGAGAAGCGAGGCTATGAGCG 239
||..|||||| ||||.||..|.|.|||.||.|||...||
BPUM_3242___y 292 CATCTTCTCC------------AAGAGGCAAAAAGGCGTGGTTATTCACG 329
BSNT_04115 240 ACTAAGCTTAGAAACGGGTTCAATGGCTTCATTTGAGCCGGCAAGAAAAT 289
..|.||||||||.||.|||.|.|||.|||..||.|||||.|||||||||.
BPUM_3242___y 330 TATCAGCTTAGAGACAGGTGCGATGTCTTTCTTCGAGCCAGCAAGAAAAC 379
BSNT_04115 290 TGTATGAAAG-CTTCGGTTTCCAG-TA-TTGTGAACCGTT---TGCAGAC 333
|.|||||.|| .||.||||| | || ||||...||.|| |.||
BPUM_3242___y 380 TATATGAGAGTGTTGGGTTT---GATAGTTGTCCGCCTTTCGGTTCA--- 423
BSNT_04115 334 TACGATGAAGATCCAAACAGTGTGTTTATGAAGAAGGAATTGTGA- 378
||.||.|||||||||||||||.|.|||||||..||||||||.| |
BPUM_3242___y 424 TATGAAGAAGATCCAAACAGTTTATTTATGACAAAGGAATTAT-AG 468
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