Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05453 and BPUM_3230

See Amino acid alignment / Visit BSNT_05453 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:04
# Commandline: needle
#    -asequence dna-align/BSNT_05453___tagD.1.24716.seq
#    -bsequence dna-align/BPUM_3230___tagD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05453___tagD-BPUM_3230___tagD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05453___tagD-BPUM_3230___tagD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05453___tagD
# 2: BPUM_3230___tagD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 405
# Identity:     308/405 (76.0%)
# Similarity:   308/405 (76.0%)
# Gaps:          15/405 ( 3.7%)
# Score: 1119.0
# 
#
#=======================================

BSNT_05453___      1 ATG---ACAATGAAGAAAGTCATCACATACGGAACGTTTGATTTATTACA     47
                     |||   .|||||||||||||.||.||.|||||.||.||||||||||||||
BPUM_3230___t      1 ATGTTTGCAATGAAGAAAGTTATTACTTACGGTACATTTGATTTATTACA     50

BSNT_05453___     48 TTGGGGACATATCAAGTTATTGGAACGGGCAAAACAATTGGGGGACTATT     97
                     .|||||.||.||.|||.|..|.|||||.|||||.||..|.||.||.||.|
BPUM_3230___t     51 CTGGGGGCACATTAAGCTGCTTGAACGTGCAAAGCAGCTTGGAGATTACT    100

BSNT_05453___     98 TAGTTGTAGCGATTTCGACTGACGAATTCAATCTT-CA-AAAGCAGAAAA    145
                     ||||.||.||.||||||||.||.||.||.|| ||| || |||.|| ||||
BPUM_3230___t    101 TAGTGGTGGCCATTTCGACAGATGAGTTTAA-CTTACAGAAATCA-AAAA    148

BSNT_05453___    146 AAGCATATCACAGCTATGAGCACCGCAAGCTGATTCTTGAAACGATCCGC    195
                     |.||.|||||.|||||.|||||.||.|||||.||||||||||||||.||.
BPUM_3230___t    149 AGGCTTATCATAGCTACGAGCATCGAAAGCTCATTCTTGAAACGATTCGT    198

BSNT_05453___    196 TACGTAGACGAAGTCATCCCGGAAAAAAACTGGGATCAAAAGGTACAAGA    245
                     ||.||||||||||||||.||.|||||.|.||||||||||||.||.|..||
BPUM_3230___t    199 TATGTAGACGAAGTCATTCCAGAAAACAGCTGGGATCAAAAAGTCCGTGA    248

BSNT_05453___    246 TGTGATCA--ATCATGATATCGATGTATTTGTCATGGGGGATGACTGGGA    293
                     .|||  ||  |.||.|||||.|||||.|||||||||||.|||||||||||
BPUM_3230___t    249 CGTG--CAAGAGCACGATATTGATGTGTTTGTCATGGGAGATGACTGGGA    296

BSNT_05453___    294 AGGGAAATTCGACTTCCTAAAGGACTACTGCAAGGTTGTTTACCTCCCGA    343
                     |||.||||||||.|||.|.||.||..|.|||.|.||.||.|||.|....|
BPUM_3230___t    297 AGGTAAATTCGATTTCTTGAAAGAGCATTGCGAAGTCGTGTACTTGAAAA    346

BSNT_05453___    344 GAACCGAAGGAATTTCCACGACAAAGATCAAAGAGGAAATCGC--GAACC    391
                     ||||.|||||.||.||.||.|||.|.||.||.||.|||||.||  ||  |
BPUM_3230___t    347 GAACAGAAGGTATCTCGACAACACAAATTAAGGAAGAAATTGCAGGA--C    394

BSNT_05453___    392 TTTAA    396
                     |||||
BPUM_3230___t    395 TTTAA    399


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