Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05440 and BPUM_3219
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:03
# Commandline: needle
# -asequence dna-align/BSNT_05440___gtaB.1.24716.seq
# -bsequence dna-align/BPUM_3219___gtaB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05440___gtaB-BPUM_3219___gtaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05440___gtaB-BPUM_3219___gtaB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05440___gtaB
# 2: BPUM_3219___gtaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 889
# Identity: 690/889 (77.6%)
# Similarity: 690/889 (77.6%)
# Gaps: 17/889 ( 1.9%)
# Score: 2647.0
#
#
#=======================================
BSNT_05440___ 1 TTGAAGAAAGTTCGTAAAGCGATAATTCCCGCAGCGGGCCTTGGGACACG 50
|||||.|||||.||.|||||.||.||.||.||.||.||.||.||||||||
BPUM_3219___g 1 TTGAAAAAAGTACGGAAAGCCATTATACCAGCTGCAGGTCTCGGGACACG 50
BSNT_05440___ 51 TTTCCTCCCTGCAACGAAAGCGATGCCTAAAGAAATGCTTCCAATCGTAG 100
|||||||||||||||.|||||.|||||||||||.|||||.||||||||.|
BPUM_3219___g 51 TTTCCTCCCTGCAACAAAAGCCATGCCTAAAGAGATGCTCCCAATCGTTG 100
BSNT_05440___ 101 ATAAGCCAACTATTCAATATATTATTGAAGAAGCCGTTGAAGCCGGCATT 150
||||.|||||.|||||||||||||||||||||||.||||||.|.||.||.
BPUM_3219___g 101 ATAAACCAACCATTCAATATATTATTGAAGAAGCTGTTGAATCAGGAATC 150
BSNT_05440___ 151 GAAGATATTATCATCGTAACAGGTAAAAGCAAACGAGCGATTGAAGACCA 200
|||||.|||||.|||||.||.||.|||.|.|||.||||.||||||||.||
BPUM_3219___g 151 GAAGACATTATTATCGTCACTGGAAAAGGAAAAAGAGCAATTGAAGATCA 200
BSNT_05440___ 201 TTTCGATTTCTCGCCGGAACTCGAAAGAAACCTTGAGGAAAAGGGTAAAA 250
|||.|||||..|.||.|||||.||..|.|||||.||||||||.||.||||
BPUM_3219___g 201 TTTTGATTTTGCTCCAGAACTTGAGCGTAACCTAGAGGAAAAAGGGAAAA 250
BSNT_05440___ 251 CCGAACTGCTTGAAAAAGTAAAAAAAGCGTCAAACCTCGCTGATATTCAC 300
..||.|||.|.||||||||||..|||.|.||.|||.|.||||||||.|||
BPUM_3219___g 251 AGGAGCTGTTAGAAAAAGTAAGGAAATCTTCTAACATTGCTGATATCCAC 300
BSNT_05440___ 301 TATATTCGCCAAAAAGAACCAAAAGGACTTGGGCATGCCGTTTGGTGCGC 350
||.|||||.|||||||||||||||||.|||||.|||||.||||||||.||
BPUM_3219___g 301 TACATTCGTCAAAAAGAACCAAAAGGTCTTGGTCATGCTGTTTGGTGTGC 350
BSNT_05440___ 351 ACGCAACTTTATTGGAGACGAGCCATTCGCAGTTCTCCTTGGAGACGACA 400
|.|.||||||||.||.||.|||||.||.||.|||.|..|.||.||.||||
BPUM_3219___g 351 AAGAAACTTTATCGGTGATGAGCCTTTTGCTGTTTTATTAGGTGATGACA 400
BSNT_05440___ 401 TTGTCCAAGGAGAAAAACCTGGTCTTCGCCAGCTGATGGACGAGTACGAA 450
||||.||||..||||.||||||.||.||||||||||||||.||.||||||
BPUM_3219___g 401 TTGTTCAAGCCGAAACACCTGGGCTCCGCCAGCTGATGGATGAATACGAA 450
BSNT_05440___ 451 AAGACTCTCTCTTCCGTTATTGGCGTTCAGCAAGTACCTGAAGACCAAAC 500
||.|||||.||.||.||.|||||.||||||||||||.|.||..||.|.||
BPUM_3219___g 451 AAAACTCTATCATCTGTCATTGGTGTTCAGCAAGTAGCAGATCACGATAC 500
BSNT_05440___ 501 GCATCGCTACGGAATCATTGATCCTCTGACAAACGAAGGGCGCCTATATC 550
||||||||||||.||.||.||||||||.|||.|.|||||.||||..||.|
BPUM_3219___g 501 GCATCGCTACGGGATTATCGATCCTCTTACACAAGAAGGACGCCGTTACC 550
BSNT_05440___ 551 AGGTCAAAAACTTTGTAGAAAAACCAAAACCG---GGCACGGCACCGTCT 597
|.||.|||||||||||.|||||.|| .||| ||.||.|||||.||.
BPUM_3219___g 551 AAGTGAAAAACTTTGTTGAAAAGCC---GCCGCAAGGAACAGCACCATCG 597
BSNT_05440___ 598 AACCTTGCGATTTTGGGACGGTATGTCTTTACTCCTGAAATTTTCATGTA 647
||.||.||.|||||.|||||.||..|.||.||.||.||.||.||||||||
BPUM_3219___g 598 AATCTAGCCATTTTAGGACGCTACATTTTCACGCCAGAGATCTTCATGTA 647
BSNT_05440___ 648 CTTAGATAAACAGCAA---ATCGGTGCAGGGGGAGAGATCCAGCTGACCG 694
|.|.| |||||||| ||.||||||||.||.||.||.||||||||.|
BPUM_3219___g 648 CCTCG---AACAGCAAGAGATTGGTGCAGGTGGGGAAATTCAGCTGACAG 694
BSNT_05440___ 695 ATGCTATTCAGCAGTTAAACGAAATCCAGCGCGTATTTGCTTATGACTTT 744
||||.||.|||.||.|.||.||.||||||||.|||||.||.|||||.|||
BPUM_3219___g 695 ATGCCATCCAGAAGCTGAATGACATCCAGCGAGTATTCGCCTATGATTTT 744
BSNT_05440___ 745 GAAGGCAAACGCTATGATGTTGGAGAAAAACTCGGTTTTATCCAGACAAC 794
|||||.|||||.||.|||||.||.||.||.|..||.||.|||.|||||||
BPUM_3219___g 745 GAAGGAAAACGATACGATGTCGGTGAGAAGCAAGGCTTCATCGAGACAAC 794
BSNT_05440___ 795 TCTCGAATTTGCCATGCAGGA-CAGCGAACTGAAGGATTCACTGATTCCA 843
.||.|||||||||.|.||.|| .|| ||.|||||..|...|||.||||||
BPUM_3219___g 795 GCTTGAATTTGCCCTTCAAGATGAG-GATCTGAAAAAGAAACTCATTCCA 843
BSNT_05440___ 844 TTTATGCAGGACCTTCTGTCAAAAGAAGAATT---TTAA 879
||||||.|..|.|||||...||||||||||.| ||||
BPUM_3219___g 844 TTTATGAAACAGCTTCTCGAAAAAGAAGAAGTGAATTAA 882
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