Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05428 and BPUM_3215
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:03
# Commandline: needle
# -asequence dna-align/BSNT_05428___lytB.1.24716.seq
# -bsequence dna-align/BPUM_3215___lytB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05428___lytB-BPUM_3215___lytB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05428___lytB-BPUM_3215___lytB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05428___lytB
# 2: BPUM_3215___lytB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2375
# Identity: 1397/2375 (58.8%)
# Similarity: 1397/2375 (58.8%)
# Gaps: 496/2375 (20.9%)
# Score: 3469.5
#
#
#=======================================
BSNT_05428___ 1 TTGAAAAAGATGAAGCTTCT-----------GGTTCTGTCGTCAGTAACT 39
|||||||| ||.||| ||| .|| ||.|| |.|||
BPUM_3215___l 1 TTGAAAAA-ATTAAG--TCTAACATTTACAACGT----TCATC--TTACT 41
BSNT_05428___ 40 GCTGCAGCTCTGATGTTTACGCAATCTGCCCAGGCTGC--CGACAA-AAC 86
..|| ||..|.||||.||.|..|| |.||||| ||.||| ..|
BPUM_3215___l 42 TTTG-----CTTGTATTTATGCCAAATG---ATGCTGCAGCGGCAAGCTC 83
BSNT_05428___ 87 AATTTCGGTAAAGTTAAGTAATTAT-TTGGGCAAT-AAATCAAGTGTT-- 132
||||||.||.||.|||...||.||| ||||| ||| |||.|||.| ||
BPUM_3215___l 84 AATTTCTGTTAAATTATCAAACTATGTTGGG-AATAAAAACAACT-TTAA 131
BSNT_05428___ 133 GATATCGACATTACCGGCTTATACGAAATTCCGGG--CTCAGGAATC-TC 179
.|||||..||| |||||||||||.||.|..|.|| |..|.|.||| ||
BPUM_3215___l 132 CATATCATCAT--CCGGCTTATACAAAGTAACTGGTACAAATGTATCTTC 179
BSNT_05428___ 180 CG-----CGACA-GAGCGGTACGGCGGGGCGACCCGCTTTGATGTGGCAA 223
|| |||.| || .|||| .||.|||.|.|||.||.||.|
BPUM_3215___l 180 CGTCGCTCGATATGA-TGGTA--------AGAACCGTTATGAGGTAGCCA 220
BSNT_05428___ 224 ACAATGTCGCATCTGCCGGATGGACGAACCCGAGC-ACAGTCGTGATTGT 272
|.|.|.||||.||.||.||.||||..||.|| |.| ||..|.||.|||||
BPUM_3215___l 221 ATAGTATCGCTTCAGCAGGTTGGAAAAATCC-ATCTACCATTGTCATTGT 269
BSNT_05428___ 273 CAACCGAGACGCTTTTGCGGACGCGCTCTCTGCAACTCC----GCTTGCA 318
.||.||.|||||.|||||.||.||..|.||.||.||.|| ||||..|
BPUM_3215___l 270 AAATCGTGACGCATTTGCAGATGCTATTTCCGCTACACCATTAGCTTATA 319
BSNT_05428___ 319 AA--GAAGTACGATGCGCCGATTCTTTTA-ACAGATGCGGGAACGCTGAC 365
|| || ||||.||.||| ||.|| ||..||||.|.||...|.||
BPUM_3215___l 320 AACTGA------ATGCACCTATT-TTATATACGAATGCTGAAAAATTAAC 362
BSNT_05428___ 366 GGCGAAA----ACCGAAACTCAAATTGCCAAGATGAAGCCAGATAACATC 411
||| ||.||||..||||||...||.|||||.||.|||||.||.
BPUM_3215___l 363 ----AAAGACCACTGAAAAGCAAATTAAAAAAATGAATCCTGATAATATT 408
BSNT_05428___ 412 TTAATTATCGGTGGAACAACGAGCGTTTC-----CAA-----AAATG--T 449
.|.|||||||||||||||||.||.||||| ||| ||| | |
BPUM_3215___l 409 CTCATTATCGGTGGAACAACAAGTGTTTCTTCAGCAACTGAGAAA-GCAT 457
BSNT_05428___ 450 TGA--AAACACGCTGA------AAAAGTAT--GGGGCAATTGTCCGTATC 489
|.| |||.||| || |||||.|| |.||.|| |||
BPUM_3215___l 458 TAAAGAAATACG--GAAAGATCAAAAGAATCAGTGGTAA--------ATC 497
BSNT_05428___ 490 GGCGGCGCCAATCGATATGATGTGTCTAAAAATATTGC----GAGCCGGA 535
.||.||||.|||.||..||||.||||| || ||
BPUM_3215___l 498 -----------ACGTTATGCTGTTTCACAAAACATTGCAAAAGA----GA 532
BSNT_05428___ 536 TGGGGTCCTACAGCCAGGCGATTGTTGCCACCGG------TTTGGTCTTC 579
|||||..|||.||..|.||.||.||.||.||.|| ||| |.|
BPUM_3215___l 533 TGGGGAACTATAGTGAAGCTATAGTGGCAACAGGAAGCATTTT----TAC 578
BSNT_05428___ 580 TCCGAC---GCTCTGTCGATCGCGCCTTATGCGGCAATGAACGGTTATCC 626
| ||| ||| ||..|..|.||.|||||.||||..|||||.||.||
BPUM_3215___l 579 T--GACAGTGCT---TCAGTAACTCCATATGCTGCAAGAAACGGCTACCC 623
BSNT_05428___ 627 GATACTGCTCTCAGGGAATAA--------TACGATCCGAAGCGA-TTACA 667
.||.||| |.|..|||.|| ||| |.| |||||
BPUM_3215___l 624 TATTCTG---TTAACGAAGAAAGACAGTTTAC---------CCACTTACA 661
BSNT_05428___ 668 ATATTCCGAGCAAAGTTACAATCGTCGGCGGTCCGTTGAGTGTCAGCACA 717
|..|.||||..||||||...||..|.||.||......||||||.||||.|
BPUM_3215___l 662 AACTCCCGAAAAAAGTTGTGATTATTGGTGGAGAAAAGAGTGTTAGCAAA 711
BSNT_05428___ 718 AGTGTTGAA-AACACATTAAAGAAAAAAG-CGGCTGTTACCCGCATCGGC 765
|..|||||| ..||.||||| |||||.| |..||||.|...|.||.||.
BPUM_3215___l 712 AAAGTTGAATCTCAAATTAA--AAAAACGTCCACTGTGAAAAGAATAGGT 759
BSNT_05428___ 766 GGTGCGAACAGATATGAAGTGTCTGCGAATATTGTTAAC-GCGCTTAACA 814
||.||.||.||||||||.||.|||||.||||||| |||| |.|.|.||||
BPUM_3215___l 760 GGAGCTAATAGATATGAGGTCTCTGCAAATATTG-TAACTGGGTTAAACA 808
BSNT_05428___ 815 TGAACGC--ATCAAAGGTTTTCATGT--CTAACGGAATGACTTTTGCAGA 860
||||.|| || |||.|.| ||.| |.|||||....|.|||..||||
BPUM_3215___l 809 TGAATGCTAAT--AAGCTAT--ATTTAGCAAACGGTTCTATTTTCACAGA 854
BSNT_05428___ 861 TGCACTGGCCGGTTCCGTCCTTGCAGCCA--AACAAAAGCATCCTTTGCT 908
||||.|..|...|||..|..|.||||||| ||.||.||| |||.||.|
BPUM_3215___l 855 TGCAATTACATTTTCACTTTTAGCAGCCAAGAATAACAGC--CCTATGGT 902
BSNT_05428___ 909 ACTTGT-----CCAATCGGGCAGTTTGCCGCCTCCTGTCGCAGATGT-AG 952
|||||| ..||| |||.|..|..|.||||| ||..| |.
BPUM_3215___l 903 ACTTGTGAAAGAAAAT-----AGTCTAACATCACCTGT----GACATCAA 943
BSNT_05428___ 953 TCGCCAAAAAA---GGAACACAGTCTTTTGCTTTG-CT--TGGAGGGA-- 994
|.|.||||||| ||.||..|.|||||....||| || |||||..|
BPUM_3215___l 944 TTGTCAAAAAACAGGGGACGTACTCTTTCCAATTGTCTGGTGGAGTAAAA 993
BSNT_05428___ 995 -CC----------GCCT-CGATC-----------ACGGA--TTCGTTGAA 1019
|| |.|| |.||| |.|.| ||..|||||
BPUM_3215___l 994 TCCATTTCAGCAAGTCTACAATCTAAATTATCAAAAGAATTTTATTTGAA 1043
BSNT_05428___ 1020 AAACAGCCTGGCAGAT-ATGATTACCGGGAACGGATACTCTGTTAATCTA 1068
.||.| || |.|||||.| ||..|| .|||| ||||
BPUM_3215___l 1044 GAATA---------ATAAGGATTATC---AATTGA----ATGTT--TCTA 1075
BSNT_05428___ 1069 TCGGGCGGAAAGCTTGTGCTCAACAAAAAT---AAT-AAAGCTGTCAAAA 1114
.||| |||||| ||| ||||...|.||.|
BPUM_3215___l 1076 ACGG--------------------AAAAATTTCAATCAAAGGCATTAAGA 1105
BSNT_05428___ 1115 CGTTTGAAACTTCA----------TTTACGGCATCACCTAAAAAATATTC 1154
|.||||.|.||||| || ||..|.||||||||
BPUM_3215___l 1106 CATTTGGATCTTCAGTAAGAGTTGTT----------CCAGAGAAATATTC 1145
BSNT_05428___ 1155 GACTTCAAATTCCATCAGCATCAA------CGGAAGGCCTTATTTAGGCA 1198
.|||.|||||..||| ||.| .||||.| |.||.||.||.|
BPUM_3215___l 1146 AACTACAAATGTCAT-----TCGAGTTGCTGGGAAAG-CATACTTGGGGA 1189
BSNT_05428___ 1199 ATATGAAGTTTACGATTGAATCAAGCAAATATATTCGACCGATAAACGAA 1248
|.|||||.|||.|..|.||||||.|| |||||||||||.|.|||.|||
BPUM_3215___l 1190 ACATGAATTTTGCTGTAGAATCAGGC---TATATTCGACCAACAAATGAA 1236
BSNT_05428___ 1249 AACATTCCGTTTGAAGATTATCTAAAAGGTGTTGTGCCGCACGAAATGCC 1298
|||||.||.||||||||||||||.|||||.|||||||||.|.||||||||
BPUM_3215___l 1237 AACATCCCTTTTGAAGATTATCTTAAAGGGGTTGTGCCGAATGAAATGCC 1286
BSNT_05428___ 1299 GGCAAGTTGGCAGACTGAAGCTTTAAAAGCCCAAGCGGTGGCAGCGAGAA 1348
.|||||.|||||...|||.||.||.|||||.||.||.||.|||||..|.|
BPUM_3215___l 1287 AGCAAGCTGGCATGTTGAGGCATTGAAAGCACAGGCTGTTGCAGCACGTA 1336
BSNT_05428___ 1349 CATATTCGGT---CGGT-TCCGCAGGAAAAGTAGTGGCTGATACGCAATC 1394
|||||||.|| |.|| | |||.|||||.|||.|.|||||...|.|
BPUM_3215___l 1337 CATATTCTGTAAGCAGTAT----AGGGAAAGTTGTGCCAGATACAACAGC 1382
BSNT_05428___ 1395 GTTTCAGGTTTACGGCGGATATGACTGG------AATTCGA-AGACATCC 1437
|||.||.||.||.|||||.|||.||||| ||.||.| |.|
BPUM_3215___l 1383 GTTCCAAGTATATGGCGGTTATAACTGGTCTACAAACTCTACAAA----- 1427
BSNT_05428___ 1438 AGCGTTGTAAATTCCACAAAAGGACAA-GTTTTAAAATATAACGGCAATT 1486
||| ||||.||.|.|||||||| ||| ||.|||||||||||....|.|.
BPUM_3215___l 1428 AGC--TGTAGATGCTACAAAAGG-CAAGGTATTAAAATATAATAATAGTC 1474
BSNT_05428___ 1487 TGATTTCGGCCGTTTACTCATCAAGCAACGGGGGATATACGGAAGCAAGC 1536
|||||||.||....||.|..||.||.||.||.||.||.||.||.||.||.
BPUM_3215___l 1475 TGATTTCTGCAACCTATTATTCTAGTAATGGAGGCTACACCGAGGCTAGT 1524
BSNT_05428___ 1537 GCAGAGGTATGGGGCGGCAA-TG---TTCCATATTTAATCGCCAAAGCGG 1582
|.|||.||.|| |.||| || ||||.||..||.||||.|||||.|
BPUM_3215___l 1525 GAAGAAGTGTG----GTCAAGTGCATTTCCTTACCTAGTCGCAAAAGCAG 1570
BSNT_05428___ 1583 ATACATATGACCCGAAAACCA-GCTGGTCGATATCTTTGAAT----AAAA 1627
|||||.|.||.||.|||| | ||| |.||.| |||..|.| ||||
BPUM_3215___l 1571 ATACAAAAGATCCAAAAA--ATGCT--TGGACA-CTTAAACTATCAAAAA 1615
BSNT_05428___ 1628 CGCAGATCA--ACACCAGCGGCTTAAATCTGAG-CAGCCCTAGCA-CTTG 1673
|.||..|.| |||.|| |||| .||.| ||.|.|.|||| ||||
BPUM_3215___l 1616 CTCAATTGAGTACATCA----CTTA---GTGCGTCATCTCCAGCATCTTG 1658
BSNT_05428___ 1674 GTGGAATTCGACTAATGAAACGAACTCC--GCCTATTTATCGGGACTGAA 1721
|||||.|..|||....||||| ||.|.| |.|..||.|..||| .||||
BPUM_3215___l 1659 GTGGAGTAAGACAGCAGAAAC-AAATGCAAGTCAGTTGAATGGG-TTGAA 1706
BSNT_05428___ 1722 AAGCTGGTTTATGACCAAT----AAATATCCTAG-TGCGGAATCTATTAA 1766
.|.||||.||.|.|..||| |||.||| || |.|.|| .|||||
BPUM_3215___l 1707 GAACTGGATTCTAAAAAATAAAGAAACATC--AGCTTCAGA---GATTAA 1751
BSNT_05428___ 1767 GATCACGAAAATCTCAAGCCTGAGC----CTGAGCAGTGCAAAAACTGCC 1812
|||..|.||.||.||.||..|.|.| |||.| |||||....
BPUM_3215___l 1752 GATTGCTAATATTTCTAGTGTCACCTTTTCTGGG-------AAAACAAAA 1794
BSNT_05428___ 1813 GGTCAGCGGCCGAAAACAGCAGAGGTGAAGTTTTCTTACTTTGTCAAAG- 1861
||.|||.|..|.|||||||| || ||||| ||||
BPUM_3215___l 1795 GGGCAGAGAGCAAAAACAGC--------------CT--CTTTG--AAAGT 1826
BSNT_05428___ 1862 -------------AAAAATCAAATGGCTATGTTCTGTCAAACGGAAAACT 1898
||||||.||| .|.||| |.
BPUM_3215___l 1827 TAGCTATCACTTAAAAAATAAAA----CAGGTT---------------CC 1857
BSNT_05428___ 1899 TTCAG-----AAAAAACAGCGAC-----GATTTCCGTGACGACGACTCAA 1938
|.||| |.|||.||||.|| |.||| |..|.||||.||
BPUM_3215___l 1858 TACAGTATGAATAAATCAGCAACACTTAGTTTT-----AAAATGACTGAA 1902
BSNT_05428___ 1939 TTAAGATCGATGTTGGGCGGCATGAATATGAAGAGCACGTATGCTTCTTT 1988
||.|||||.||..||||.|.||..|||.|.||.|||||.||.|||||
BPUM_3215___l 1903 TTTAGATCAATACTGGGTGCCACTAATTTAAAAAGCACATACGCTTC--- 1949
BSNT_05428___ 1989 A-TCA--AACAATACGAACGCTTTTATTCTCAGCGGTAAAGGATTCGGCC 2035
| ||| |||||.||.||.|.|||.|.|.|||..||.|||||||..||.|
BPUM_3215___l 1950 AGTCAAGAACAACACCAATGATTTCACTATCACAGGAAAAGGATATGGAC 1999
BSNT_05428___ 2036 ACGGAATCGGCATGAGTCAGTATGGAGC--AAATGCCAGAGCTGCTGCCG 2083
|.|||.|.||.||||||||.|||||||| ||||| |||||||...|.|
BPUM_3215___l 2000 ATGGAGTTGGAATGAGTCAATATGGAGCGAAAATG--AGAGCTGAATCAG 2047
BSNT_05428___ 2084 G--GCACGATTA--CAAGAAGATTTTAAGT--TTCTATTATCC------- 2120
| |||| .|| |||| .||||| || |||||||||||
BPUM_3215___l 2048 GAAGCAC--ATACTCAAG--CATTTT--GTCATTCTATTATCCAGGCGCA 2091
BSNT_05428___ 2121 AAATACGACTCTATCAAGCTATTAA 2145
|||| ||.|||...|||||
BPUM_3215___l 2092 AAAT-------TAACAACAAATTAA 2109
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