Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05422 and BPUM_3211
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:03
# Commandline: needle
# -asequence dna-align/BSNT_05422___tuaA.1.24716.seq
# -bsequence dna-align/BPUM_3211___tuaA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05422___tuaA-BPUM_3211___tuaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05422___tuaA-BPUM_3211___tuaA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05422___tuaA
# 2: BPUM_3211___tuaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 703
# Identity: 446/703 (63.4%)
# Similarity: 446/703 (63.4%)
# Gaps: 110/703 (15.6%)
# Score: 1301.5
#
#
#=======================================
BSNT_05422___ 1 ------------------ATG------TACAATGAATATTCAAGCCAG-- 24
||| ||.|..||||| |.|||..||
BPUM_3211___t 1 GTGAGTGCAGAGAAAGCGATGAATCTTTATAGAGAATA-TGAAGTGAGAC 49
BSNT_05422___ 25 CAAACATATTCCTGTGCTCTATCTAAAAAAGCA----GTACGATATTTAT 70
.|||| .|.||.|.||| || |||.|.|.|| ||.||.|||||||
BPUM_3211___t 50 GAAAC-CACTCTTTTGC-CT---TAACAGAACATATGGTTCGTTATTTAT 94
BSNT_05422___ 71 ATATGAAACGGGTAATGGA---CATCGTCCT--TTC-----CTTGA--TT 108
.|...|||||..|.||.|| .|| ||.|| ||| .|||| ||
BPUM_3211___t 95 TTGCAAAACGTTTCATAGATTTAAT-GTTCTCGTTCATCGGATTGATGTT 143
BSNT_05422___ 109 GGGCTCGC---TC--TTACACTACCGTTTATTCTGCTGTTTTGTATATTA 153
|.|..||| || || |.|.||| ||||.||||| ||||
BPUM_3211___t 144 GAGTACGCCAATCATTT----TGCTGTT-----TGCTCTTTTG---ATTA 181
BSNT_05422___ 154 ATCTGTATCGAAACACCAGGTTC--CCCTTTATACCGCCAGGAACGCGTC 201
|.||| ||||||||.||..| ||.|||||| ..|||||..|.|||
BPUM_3211___t 182 AGCTG----GAAACACCGGGACCAGCCTTTTATA--TGCAGGAGAGGGTC 225
BSNT_05422___ 202 GGAAAAGACGGGAAGCAT-TTTAAGGTGATCAAATT------GC---GTT 241
||.|||||.|| | |||| ..|.||||| || |.|
BPUM_3211___t 226 GGGAAAGATGG------TGTTTA----CTTTAAATTATGGAAGCTCAGAT 265
BSNT_05422___ 242 CTATGAGAATTGACGCAGAAA----AATCCGGTGCAAAATGGGCGCAGAA 287
|.||||||||.||.||.|||| | ||.||.||||||||.||.||
BPUM_3211___t 266 CGATGAGAATCGATGCTGAAAGCGGA----GGAGCGAAATGGGCACAAAA 311
BSNT_05422___ 288 GGATGATCCGCGCATTACTGCAGTCGGGTCTTTTATAAGAAGAACAAGAA 337
..|||||||.||.||.||...|||.||..|.||.||..|.|.||||||||
BPUM_3211___t 312 AAATGATCCACGTATCACCAAAGTGGGAGCCTTCATTCGTAAAACAAGAA 361
BSNT_05422___ 338 TCGATGAACTTCCGCAGTTGATCAATGTGCTGGCTGGTGACATGAGCCTT 387
||||||||||||||||.||.|||||||||.|....||.||.|||||..|.
BPUM_3211___t 362 TCGATGAACTTCCGCAATTTATCAATGTGTTAAAAGGAGAAATGAGTATC 411
BSNT_05422___ 388 GTGGGGCCAAGGCCTGAAAGACCGATGTTTACCGCTCAGTTTCACAACGA 437
||.||.||..||||.||||||||||||||||||||..|.|||.|| ||.
BPUM_3211___t 412 GTAGGTCCGCGGCCAGAAAGACCGATGTTTACCGCAGAATTTAAC--CGG 459
BSNT_05422___ 438 A--ATTCCGGGATTTA--AAAATCGCTTAATTGTTAAACCGGGGTTAACG 483
| |||||.||.|||| |||| |.||||..||.||.|||||..|.||.
BPUM_3211___t 460 ACGATTCCAGGTTTTACGAAAA--GATTAACGGTCAAGCCGGGACTGACA 507
BSNT_05422___ 484 GGACTTGCTCAGGTAAACGGAGGCTATGATATCAGTCCGAGAGAAAAATT 533
||.||||||||.|||||.|||||.|||||.||.|||||.||.||||||||
BPUM_3211___t 508 GGTCTTGCTCAAGTAAATGGAGGATATGAAATGAGTCCAAGTGAAAAATT 557
BSNT_05422___ 534 GGTGCACGATCTGTATTACATTCGGAACTTAACGTTTCTTCTCGATTTAA 583
....||.||..|..||||.||||..|||||.||.|||..||||||....|
BPUM_3211___t 558 AACACATGACTTACATTATATTCAAAACTTGACATTTTCTCTCGACACGA 607
BSNT_05422___ 584 AGGTTATACTAAAAACGATTAAAGTTGTATTGACTGGCGAAGGAGCCAGA 633
||.||||..||||||||.|.|||||..|..||||.||.||.|||||||||
BPUM_3211___t 608 AGATTATGGTAAAAACGTTAAAAGTCATCATGACGGGTGACGGAGCCAGA 657
BSNT_05422___ 634 TAA 636
|||
BPUM_3211___t 658 TAA 660
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