Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05418 and BPUM_3208
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:02
# Commandline: needle
# -asequence dna-align/BSNT_05418___tuaD.1.24716.seq
# -bsequence dna-align/BPUM_3208___tuaD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05418___tuaD-BPUM_3208___tuaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05418___tuaD-BPUM_3208___tuaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05418___tuaD
# 2: BPUM_3208___tuaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1412
# Identity: 924/1412 (65.4%)
# Similarity: 924/1412 (65.4%)
# Gaps: 154/1412 (10.9%)
# Score: 2817.0
#
#
#=======================================
BSNT_05418___ 1 ATGTTGAAAAGAATTGCTGTCATTGGGACGGGATATGTCGGGCTGGTGTC 50
||||||||.|.|||||||||.|||||.||.||.|||||||||.|.||.||
BPUM_3208___t 1 ATGTTGAAGAAAATTGCTGTGATTGGAACAGGGTATGTCGGGTTAGTATC 50
BSNT_05418___ 51 TGGAACTTGTTTTGCTGAAGTGGGAAACTC-AGTTGTCTGCTGTGATATC 99
.||.||||||||||||||..|.||||| || .||..||||||||||.||.
BPUM_3208___t 51 GGGTACTTGTTTTGCTGATATCGGAAA-TCGTGTCATCTGCTGTGACATT 99
BSNT_05418___ 100 GACGCTGA---AAAAAT-AAGAGGACTCTT----AGCCGGAGTAATGCCG 141
|| ||| |||||| ||.|| ||| || .||.||..|.||.
BPUM_3208___t 100 GA---TGAATCAAAAATCAACAG----CTTAAAAAG-TGGTGTCGTTCCC 141
BSNT_05418___ 142 ATTTATGAGAACGGCCTAAAAGAGCTTG-TGGATAAAAA---CGTA-AAC 186
|||||||| |.|||..|.||||...||| |.||.||.|| ||.| ||.
BPUM_3208___t 142 ATTTATGA-ACCGGGTTTAAAGGAATTGATTGAAAAGAATACCGAAGAAG 190
BSNT_05418___ 187 GAAAATCGCTTATTTTTCTCTACTGATATTCCAAAAGCGATTGAAGAAGC 236
||| |..|.|||||..|.||..|||||||....||.||....|||.|
BPUM_3208___t 191 GAA----GACTGTTTTTTACAACCAATATTCCTGCTGCTATCAGGGAATC 236
BSNT_05418___ 237 TGAGATTATTTATATTGCAGTCGGAACACCGATGTCGGAAACAGGG-GAA 285
.||.|||||.||||||||.||.||.||.||||||.|.| .|||||| |||
BPUM_3208___t 237 AGACATTATCTATATTGCTGTAGGGACTCCGATGACAG-CACAGGGAGAA 285
BSNT_05418___ 286 GCAGATCTGACATTTGTTAAATCTGTTGCCGAAATGATCGGAAAGCATCT 335
||||||.|.||.|..||.|||.||||.||..|||..||.||..|.|||.|
BPUM_3208___t 286 GCAGATTTAACGTACGTGAAAGCTGTCGCTCAAACAATTGGTGAACATTT 335
BSNT_05418___ 336 GAACGGCTATAAAGTCATCGTCAACAAAAGCACTGTCCCTGTTGGCACTG 385
.||.|||||.|||.||||||||||.||||||||.||.||.|||||.||.|
BPUM_3208___t 336 AAATGGCTACAAAATCATCGTCAATAAAAGCACAGTGCCCGTTGGAACAG 385
BSNT_05418___ 386 GAAAGCTCATACAAGGTATCATACAACGTATTTC--AAAAGGA------- 426
|...||||.|.||||..|| |.|| |||||.|
BPUM_3208___t 386 GCCGGCTCGTTCAAGCCAT-----------TGTCGAAAAAGCATCGCGCA 424
BSNT_05418___ 427 -GAAGT-TCCTTTCGACGTCGTTTCGAATCCCGAATTCCTTCGTGAAGGA 474
.|||| ||||||.||.|||||.||.|||||.|||||.||..|.|||||.
BPUM_3208___t 425 GTAAGTATCCTTTTGATGTCGTATCCAATCCAGAATTTCTCAGAGAAGGC 474
BSNT_05418___ 475 ACAGCTATTTACGATACGATGAATATGGAAAGAGCCGTCATCGGCGCGAC 524
.|.||.||..|.|||||||||||||||||..|.|..||.||.||..|.||
BPUM_3208___t 475 TCTGCCATCAAAGATACGATGAATATGGAGCGGGTGGTTATAGGGTCTAC 524
BSNT_05418___ 525 AAG-----------CGAAAGGGCTGCTGCGATAATTGAAGAACTT-CATA 562
||| ||.|| ||.||| ||||..|| |||.
BPUM_3208___t 525 AAGTTCTCATGCATCGGAA-----------ATCATT-AAGACGTTACATG 562
BSNT_05418___ 563 AGCCTTTTCAAAC----------GAAAATTGTCAAGTCTAACCTTGAAAG 602
|.||.|||||||| |||| |.|||||.|||||
BPUM_3208___t 563 AACCGTTTCAAACAGTAGTGGTTGAAA----------CCAACCTAGAAAG 602
BSNT_05418___ 603 TGCAGAAATGATTAAATATGCTGCAAATGC-ATTTTTGGCTACAAAGATC 651
||||||||||||||||||.||.|||||||| ||..|| ||.||.||.||.
BPUM_3208___t 603 TGCAGAAATGATTAAATACGCAGCAAATGCGATGCTT-GCAACCAAAATT 651
BSNT_05418___ 652 TCGTTCATTAATGATATCGCGAATATTTGCGAAAGAGTCGGAGCTGACGT 701
||.||.||.||||||||.||.|||||||||||..||||.||.||.||.||
BPUM_3208___t 652 TCTTTTATCAATGATATTGCCAATATTTGCGATCGAGTGGGTGCAGATGT 701
BSNT_05418___ 702 ATCA-AAGGTGTCTGAAGGTGTCGGACTCGACAGCAGAATCGGCAATAAA 750
|.| ||.||.||.|||||.||.||.||.||.|||.||||.||..|.||.
BPUM_3208___t 702 -TGAGAAAGTATCAGAAGGCGTTGGTCTAGATAGCCGAATTGGACAGAAG 750
BSNT_05418___ 751 TTTTTAAAAGCCGGAATCGGCTTTGGTGGCTCCTGCTTCCCTAAAGATAC 800
|||||||||||||||.|.||.|||||.||.|||||||||||.||.|||||
BPUM_3208___t 751 TTTTTAAAAGCCGGAGTTGGTTTTGGAGGTTCCTGCTTCCCGAAGGATAC 800
BSNT_05418___ 801 AATGGCTTTATTGCATATCGC-GAAGTCAGCCGGCTACCCTTTTAAAATG 849
.|.|||..||||..|.||.|| ||| .|||..||.||.|.||||||..|.
BPUM_3208___t 801 CAAGGCACTATTAAAAATAGCTGAA-ACAGTAGGTTATCGTTTTAAGTTA 849
BSNT_05418___ 850 ATTGAAGCCGTCATCGAGACGAACCAAAAGCAGCGTGCCCACATTGTGCA 899
||||||.|.||..||||.||.||...|.|.||.||.||..|..|.|||.|
BPUM_3208___t 850 ATTGAATCTGTTGTCGAAACAAATACACATCAACGAGCGTATCTCGTGAA 899
BSNT_05418___ 900 GAAGCTCCTTGATGTGTTCGGCGATTTAAACGGCAAGACCATTTCAATTC 949
|||..|..|.|||||.|..||.||..|.||.||.||.||.||.||..|..
BPUM_3208___t 900 GAAATTGATGGATGTCTATGGTGACATCAAGGGAAAAACGATCTCTGTAT 949
BSNT_05418___ 950 TTGGTTTGGCATTCAAGCCTAATACAAACGATATGCGCTCAGCTCCATCT 999
|.||.||||||||.||.|||||||||||.|||.|..|.||..||||..||
BPUM_3208___t 950 TAGGATTGGCATTTAAACCTAATACAAATGATTTAAGATCCTCTCCTGCT 999
BSNT_05418___ 1000 CTGGATGTCATTCCGACGCTG--AGAAGTCTTGGTGCTAAAGTCAAAGCG 1047
||.|||.|.|||||.|.|.|| ||| |||.||.|||.|.||.||||||
BPUM_3208___t 1000 CTTGATATTATTCCAATGTTGCAAGA--TCTAGGAGCTTATGTAAAAGCG 1047
BSNT_05418___ 1048 TTTGATCCGATTGCGGTTC-CT--GAAGCAGAA-AAGATTCTGGGCGATC 1093
|.|||.||.||||| || || ||||| ||| |||||.||.||..|.|
BPUM_3208___t 1048 TATGACCCAATTGC---TCACTTAGAAGC-GAAGAAGATCCTTGGAAACC 1093
BSNT_05418___ 1094 AAGCTGTTTACAGCGAAGATCTGTATGAGACGATTCAAGATACGGATGCC 1143
||.|..|.|.|||.||..|.||.|||.|.||.||..|..||.|.|||||.
BPUM_3208___t 1094 AAACGATATTCAGTGACAACCTATATCAAACTATAGAGCATTCAGATGCA 1143
BSNT_05418___ 1144 TGCGTCATATTGACAGAGTGGCATGAGATACAGAACATGGATATTACCAA 1193
||..||||.|||||.||.|||.|.||..||...||.||||||||....||
BPUM_3208___t 1144 TGTTTCATCTTGACTGAATGGGAAGAAGTATTAAAAATGGATATGGAGAA 1193
BSNT_05418___ 1194 ACTC--AAGGCCGCTTTGAAAAATCCCGTCTTAATCGATGGACGTAATAT 1241
|.|| |||.|..||| .||..|||.||..|.||.||||||||||||||
BPUM_3208___t 1194 AGTCAGAAGACTACTT--CAACGTCCAGTGATCATTGATGGACGTAATAT 1241
BSNT_05418___ 1242 ATTTGAAGTTGAAAAAATGAGAAACGAAGGTATGATCTATCATTCAATCG 1291
|||||||...|||.||||||||||..|.||..|.||.||||||||.||||
BPUM_3208___t 1242 ATTTGAACCAGAACAAATGAGAAAAAACGGCTTTATTTATCATTCGATCG 1291
BSNT_05418___ 1292 GACGGCCGGAAGTACAGG---------------TAGAAG---GAATTCTG 1323
|.||.||..|.||||||| |||||| ||
BPUM_3208___t 1292 GTCGTCCTCATGTACAGGATGTTAAGATGTTATTAGAAGCTTGA------ 1335
BSNT_05418___ 1324 ACCAACGTATAA 1335
BPUM_3208___t 1335 ------------ 1335
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