Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04492 and BPUM_3207
See
Amino acid alignment /
Visit
BSNT_04492 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:03
# Commandline: needle
# -asequence dna-align/BSNT_04492___ytcB.1.24716.seq
# -bsequence dna-align/BPUM_3207___galE2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04492___ytcB-BPUM_3207___galE2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04492___ytcB-BPUM_3207___galE2.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04492___ytcB
# 2: BPUM_3207___galE2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1195
# Identity: 543/1195 (45.4%)
# Similarity: 543/1195 (45.4%)
# Gaps: 509/1195 (42.6%)
# Score: 997.0
#
#
#=======================================
BSNT_04492___ 1 ---ATGAAAATACTCGTCACAGGA-GCAGCGGGCTTTATCGGCTCCCACC 46
|.||||.||.|.||.||.||| |.|| .||.|||||.||.| |||.
BPUM_3207___g 1 ATGAAGAAAGTATTGGTTACTGGAGGTAG-TGGATTTATAGGTT--CACA 47
BSNT_04492___ 47 T-CTG-CGAAGAATTACTA---AAAG-ATAAGAA-ACATAACGTTATTGG 89
| ||| .|||||||||.|| |||| |||.||| .||| |||..||
BPUM_3207___g 48 TACTGTTGAAGAATTAATAAACAAAGAATATGAAGTCAT--CGTGCTT-- 93
BSNT_04492___ 90 AATCGATGACTTTATC----GGT---------CCTACTCCA--------T 118
|||.||||| || ||| ..||.|.|| |
BPUM_3207___g 94 ----GATAACTTT-TCAACAGGTAGGAAGGAAAATATTGCACATTTATCT 138
BSNT_04492___ 119 TTTCCTTGAAATTAAAA------AACCTTAAAAACCTGCTGCAAGAAAAG 162
.||||.||.|.|.||.| ||| |||||| |.|||
BPUM_3207___g 139 GTTCCGTGTATTGAAGAGGATGTAAC----AAAACC---------AGAAG 175
BSNT_04492___ 163 CGATTTACGTTCATAAAGGAAAATCTGCTGACAGCGGATCTTGCTCCCTT 212
.|.||.|..||..|||| |||||| ||.||
BPUM_3207___g 176 TGGTTGAAATTATTAAA--AAAATC-----------------GCACC--- 203
BSNT_04492___ 213 ACTGGAAGGAGTGGACGTCATCTTTCATTTGGCGGCCATACCGG---GTG 259
.|||...|||.|||||.|.||.|| ||..| |||
BPUM_3207___g 204 ------------AGACTATATCATTCATCTTGCTGC---ACAAGTAAGTG 238
BSNT_04492___ 260 TCCGCTCAAGC----TGGGGCAATCATTTTCACCCATATGCCGCACAT-- 303
|| || |.||.||||.||| |...||||| ||
BPUM_3207___g 239 TC-------GCAGTATCGGTCAATGATT---ATATATATG------ATCA 272
BSNT_04492___ 304 -------AATATCCAAGCGCTC------------CAAA--GGCTCCTC-G 331
|||||..||| |.|| |||| |||| || |
BPUM_3207___g 273 AGAAGTGAATATTAAAG-GATCTCTGCATGTGATCAAAGCGGCT--TCAG 319
BSNT_04492___ 332 AGGC--GTGCCGGGAACATTCTATTCA--AACGTTCGTCTTTG---CATC 374
|||| ||| ||| ||.| |.||.|||| ||||
BPUM_3207___g 320 AGGCTGGTG---------------TCAAGAAAG-TGGTATTTGCCTCATC 353
BSNT_04492___ 375 CACCTCTTCCGTCTATGGCGAAAAACAAGGAAAAGT-------------C 411
..||.|| ||||||||.|| | |
BPUM_3207___g 354 AGCCGCT---GTCTATGGAGA--------------TCCTGTGTATCTGCC 386
BSNT_04492___ 412 AGTGAAAACACGTCGCTTTCTCC--TTTA--------TCTCCGTACGGGG 451
||| |.|||| ||| ||.|| ||.| ||.|||||.||..
BPUM_3207___g 387 AGT--AGACAC--CGC--TCACCAGTTAAAGCCTGGTTCGCCGTATGGTT 430
BSNT_04492___ 452 TAACAAAGCTTACGGGAGA-----------AAAGCTTTGC-----CATGT 485
||.||||.||.||.|.||| ||| |.|| ||| |
BPUM_3207___g 431 TATCAAAACTCACAGTAGAGCGGTACTTAGAAA---TGGCAAAAACAT-T 476
BSNT_04492___ 486 GTATCAACAGAGTTTTGGCATTCCAATTGTGATTCTCCGTT-------TT 528
|||| |.|.||| .|.||||| |||||.||.| |.
BPUM_3207___g 477 GTAT-------GATGTGG----ACTATTGT-ATTCTTCGGTATAGCAATG 514
BSNT_04492___ 529 TTTACCGTATACGGGCCAAGACAGC----GGCCGGA-----------TAT 563
||||..| |.||.|.|||||| || ||| || |.|
BPUM_3207___g 515 TTTATGG--TCCGCGACAAGAC-GCACTTGGC--GAAGGGGGGGTTGTCT 559
BSNT_04492___ 564 GGCTTTTCACCGGCTCATTAAGCAGCACCTTCAGCAA------AAGCCGC 607
.|.|||||.|.| .|||| |..|||| |.|||.|
BPUM_3207___g 560 CGATTTTCTCTG-----ATAAG--------TTTGCAAAGGTTGAGGCCCC 596
BSNT_04492___ 608 TTACCATCTTCGGTGATGGGCAGCAGTCAAGAGATTTCACTTATATCGGC 657
|| .|||.||.||.||.|||.|.||..||||||||||||..|||.|.||.
BPUM_3207___g 597 TT-TCATTTTTGGGGACGGGGAACAAACAAGAGATTTCATCTATGTAGGT 645
BSNT_04492___ 658 GACTGTGTCAAAGGCATCACCG-CTGTTCTTGGGAAACCCCGCCTTATTG 706
|| ||.| |||.||.|| .|||| .||.|||
BPUM_3207___g 646 GA-----TCTA--GCAGCAGCGAATGTT-----------GCGGCTT---- 673
BSNT_04492___ 707 GTGAAACAGTAAATATCGGCGGCGCAGAGCGTGCCTCAGTCATAAAGGTT 756
.||||| ||||.||| ||.|.||
BPUM_3207___g 674 ---TAACAG-------------------------CTCAATCA-AACGTTT 694
BSNT_04492___ 757 GTCTCCCTCATTGAGGATATTTC-----------CGGCAGAAAAGCAACA 795
|| ||.| ||||||| || |.||
BPUM_3207___g 695 GT--------TTAA--ATATTTCATGTGGGGATTCG----------ATCA 724
BSNT_04492___ 796 CT--------GCACTTTTCGGACAAA--AT------AG---CAGGG---- 822
|| ||..||| |||| || || |.|||
BPUM_3207___g 725 CTGTGAATGAGCTGTTT-----CAAACGATGAAGCGAGTGACGGGGTCGC 769
BSNT_04492___ 823 -----GAACC----------GCGCAACACGTG--GGCGGATATT------ 849
||||| ||||| .|||| || |||||||
BPUM_3207___g 770 ATCTTGAACCAATTTACAAGGCGCA--GCGTGCAGG-GGATATTGTGCAT 816
BSNT_04492___ 850 ---------TCAA------AAGCAAAACAGCTCTTGCATTATAATCCCGC 884
|||| ||.|.|||||..|||| ||
BPUM_3207___g 817 AGTACATTGTCAAATGAGGAAACGAAACAAGTCTT--------AT----- 853
BSNT_04492___ 885 CACAT-----CC----------TTAAAGGATGGCTTG------ACCAACG 913
||| || |||.||||.||.||| |||
BPUM_3207___g 854 --CATGGGAGCCTGTTGTGAGTTTACAGGAAGGTTTGGCTCGTACC---- 897
BSNT_04492___ 914 AAATCACCTATTTATCGTCGCTGT-ATCAGG------GGGAATAA 951
||..|||| ||.| |.|||| .||..|||
BPUM_3207___g 898 --ATTTCCTA----------CTATGAACAGGAAGTCAAGGCTTAA 930
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.