Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05413 and BPUM_3205
See
Amino acid alignment /
Visit
BSNT_05413 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:02
# Commandline: needle
# -asequence dna-align/BSNT_05413___tuaF.1.24716.seq
# -bsequence dna-align/BPUM_3205___tuaF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05413___tuaF-BPUM_3205___tuaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05413___tuaF-BPUM_3205___tuaF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05413___tuaF
# 2: BPUM_3205___tuaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 781
# Identity: 433/781 (55.4%)
# Similarity: 433/781 (55.4%)
# Gaps: 209/781 (26.8%)
# Score: 972.5
#
#
#=======================================
BSNT_05413___ 1 ATGAAT--TTAATCAAACGTATTGCTGGTA---------GAGTGAAAAAG 39
|||..| || ||| ||| ||.|.| ||.|.||||||
BPUM_3205___t 1 ATGTCTGGTT--TCA----TAT--CTAGGATAGGGAAACGAATCAAAAAG 42
BSNT_05413___ 40 TTTAT--TGTGGCGATAATTGTGCTTCC--TCTTATTCTTGGT--CTTGT 83
|..|| |.|||| |.||..||||.|| ||.||| |.||| ||| |
BPUM_3205___t 43 TACATCGTATGGC--TCATACTGCTGCCTATCGTAT--TAGGTGCCTT-T 87
BSNT_05413___ 84 GGGCTATTTTATACCGAAGG------GGAGTGTTGCTCCGTCTGATTACA 127
||..|.||||.|.|..|||| |.|| |.||||..|||.|
BPUM_3205___t 88 GGTTTCTTTTTTGCTAAAGGAACTACGCAG-------CAGTCTAGTTATA 130
BSNT_05413___ 128 CGGCTACTGTAACGATATCAACCGGAAACTATGGAGAAGCTAAGTACAAC 177
|.||..||||.||..|..|...|||.||.||||..||.|....|||.|||
BPUM_3205___t 131 CAGCGGCTGTTACCCTCACTCTCGGTAAATATGATGATGGGGTGTATAAC 180
BSNT_05413___ 178 AAT---GCAAAACAAGT-ACCGCTGCTGTTGAAAAACGGAGCTTTTTTAA 223
||| || |.|||| ||..|| ||.||.||||.||..||.|||.|||
BPUM_3205___t 181 AATATGGC---AGAAGTGACATCT-CTATTAAAAAGCGATGCCTTTCTAA 226
BSNT_05413___ 224 AGGA--TATTTTCCCGGGGATGTCGGAAGAGGATTTGGCGCAGTTGAAAG 271
|.|| .| |.|.|.||||| |.|||| ||..|||||
BPUM_3205___t 227 ATGAAGCA----CTCAGTGATGT-GAAAGA-----------AGAAGAAAG 260
BSNT_05413___ 272 AC--GATCTGGTGATTGAAA-------TCAGAACGGATTCGCTTTTTAAT 312
|| ||| .||||| ||| || |||...|||
BPUM_3205___t 261 ACAGGAT-------ATGAAAACCCGTCTCA--------TC-CTTACCAAT 294
BSNT_05413___ 313 --TTAAGCTACACAGGGCCTGACA---------AACAGA-------AAAC 344
.|.||.|||||| .|.||| .||.|| ||..
BPUM_3205___t 295 CAATCAGATACACA----ATTACAGTTGTCGTTCACTGATGCCGATAAGG 340
BSNT_05413___ 345 ATCGGATACTTTAG-------GAAAAA----TCAAAGACGCCTATATGAA 383
|||| |.||||.| |||..| ||.||.|| ||.|...
BPUM_3205___t 341 ATCG--TGCTTTGGCTGTCGTGAAGCAGGTGTCGAATAC----ATTTCTC 384
BSNT_05413___ 384 AGGC--GATAAGGCGCTTTTTTCAAAAAGGGAAGAAGTCATTGAAAATAA 431
|.|| |||||.||..|.|||.||||||||.|..|.||.|||||||.| |
BPUM_3205___t 385 AAGCAAGATAAAGCATTATTTACAAAAAGGCAGCAGGTTATTGAAAGT-A 433
BSNT_05413___ 432 TATTAAG--GCGCTTGAAGGCGAAACAGTCAGCTCTGATTCAAAAGTTGA 479
.||| || ||.|||.|||.||||.|.||||||..|||||||||||||||
BPUM_3205___t 434 GATT-AGCTGCACTTCAAGACGAATCGGTCAGCAATGATTCAAAAGTTGA 482
BSNT_05413___ 480 CAAACAGCGGTTTTTGTATGAACTTGAA----ACAAGCAAGCTTGATATG 525
.|||.|.||.||.||.|||||| |||.| ||| |||||||..|||
BPUM_3205___t 483 TAAAGAACGATTCTTATATGAA-TTGGAGTCTACA---AAGCTTGGAATG 528
BSNT_05413___ 526 AAGGCTGCTGAAGAAATTG-------AGCCCTTGAACGTACTAGAT---- 564
|||...|| |.|.|||| .|||| |.|||||.|||
BPUM_3205___t 529 AAGCAGGC---AAAGATTGTCGATCCTGCCC----AAGTACTTGATGAGG 571
BSNT_05413___ 565 ------AACCAGGTTGTCGGCATGTC-GCCTAAAAAAAGAGCGGT-ATTG 606
|| |||||||| ||| ||||||.|.||..| .|||
BPUM_3205___t 572 GCAATAAA----------GGCATGTCAGCC-AAAAAACGGGCACTGCTTG 610
BSNT_05413___ 607 GGCGTATTG--ATTGG-TTTGG-----CGCTGTCATTTTT----TATTAT 644
||| ||| ||||| |||.| ||| ||||.||| |.|||
BPUM_3205___t 611 GGC---TTGTCATTGGCTTTAGCATCTCGC--TCATGTTTGTCGTCTTA- 654
BSNT_05413___ 645 TGTTGTTCCGGAAGTTTTCAGAGAACGTTAA 675
||.|||||.||||.||||..||||
BPUM_3205___t 655 -------CCCGAAGTGTTCAAAGAATCTTAA 678
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.