Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05409 and BPUM_3203
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:02
# Commandline: needle
# -asequence dna-align/BSNT_05409___tuaH.1.24716.seq
# -bsequence dna-align/BPUM_3203___tuaH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05409___tuaH-BPUM_3203___tuaH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05409___tuaH-BPUM_3203___tuaH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05409___tuaH
# 2: BPUM_3203___tuaH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1299
# Identity: 824/1299 (63.4%)
# Similarity: 824/1299 (63.4%)
# Gaps: 204/1299 (15.7%)
# Score: 2326.0
#
#
#=======================================
BSNT_05409___ 1 GTGGAAACAAAAG---AAGCA------ATCATTCATGTCATCGTTGCCAC 41
||| |.|||.| ||||| |||||.|||||..||||.||.||
BPUM_3203___t 1 GTG---ATAAAGGTGAAAGCAGACTCGATCATACATGTTGTCGTAGCGAC 47
BSNT_05409___ 42 TGCTGAATGGGGAAAAGACCAATTGAGATACAGAAGGCACCGGCTGGCAG 91
.|..|||||||||.|.|||..|.|.||.||||||.||||.||||||||.|
BPUM_3203___t 48 GGGAGAATGGGGACAGGACGGACTAAGGTACAGACGGCATCGGCTGGCCG 97
BSNT_05409___ 92 AATTTTTAGCTGCT----CAGGAGGAAACGAAGGAAGTTATTTGGGTATG 137
|||||.||||..|| || |||||.||.|||||.||.||||||||
BPUM_3203___t 98 AATTTCTAGCATCTGATCCA----GAAACAAAAGAAGTCATCTGGGTATG 143
BSNT_05409___ 138 TCCGGC-TC--CGCGTGCCCAAGGGAAAGAG-----TTTCAGGAAGTCCA 179
.|||.| || |.||| .|.|.|| |||| ||.|||
BPUM_3203___t 144 CCCGTCATCATCTCGT--------CATATAGCTCCCTTTC----AGCCCA 181
BSNT_05409___ 180 T------TCTGGCATCAGGCAATTCGCTGTCAAAGACC----------TG 213
| || |.||.|.|||||| |||| ||
BPUM_3203___t 182 TAACCGATC--GAATGAAGCAATT----------GACCATTCCCGATGTG 219
BSNT_05409___ 214 CTGCAGAAAAAAATGTTTCGTTTCGGACGATATACAGATGTCTTTTACAA 263
||..|||..|||.|.|||||.||.||.||||||..|||..|.||.||.|.
BPUM_3203___t 220 CTCAAGAGCAAATTATTTCGCTTTGGTCGATATCAAGACATGTTCTATAT 269
BSNT_05409___ 264 ACATAAGCTCTCCCCATTACTCGATGAGCTTACACCTGCTTCTGCA---- 309
.|||||..|.|||||..|.||.|| |||..|||..|.|.|
BPUM_3203___t 270 TCATAAATTATCCCCTCTTCTTGA-------ACATTTGCGGCAGGAGGAA 312
BSNT_05409___ 310 ---AACGGTGAACGCTG-CTGTTTATGGTACACGTTTCCCGGATTCCCGC 355
|| ||.||..||.| .|||||||||||.||||||||.||.||.||||
BPUM_3203___t 313 AAGAA-GGGGATTGCCGTTTGTTTATGGTATACGTTTCCGGGCTTTCCGC 361
BSNT_05409___ 356 TGCTGTCTTCGCTGTATCCT----TGGGATCAGGTCATTTATGACTGCAG 401
|..|.|||| ||.||| | |||.|.||..|..|.|||||.|||||
BPUM_3203___t 362 TCTTATCTT--CTTTAT--TTGAATGGAAACATATTGTCTATGATTGCAG 407
BSNT_05409___ 402 TGACTTATGGGCTGCGCCGATCAGCGGC--CGATCAAATCTGCTGTCTGA 449
||||.|.||||..|.||||||.|||||| |.||.|.||| ||.|||.|
BPUM_3203___t 408 TGACCTGTGGGGAGAGCCGATAAGCGGCAACCATAACATC--CTTTCTTA 455
BSNT_05409___ 450 ATTCCGGCGAAAA----GTCA---TTAAAACGGCAGAGCTGA----GAAT 488
..|..||| | |||| ||||| ||||| | ||||
BPUM_3203___t 456 TATGAGGC----AGCGTGTCATTGTTAAA---GCAGA----AAATCGAAT 494
BSNT_05409___ 489 TATACAACGAGCAGATTCA--ATAACCTGTTCATCAGATTATCTTCACAA 536
|||..||...|||.| || ||.||.||.||.||..|.|||.|.|||.|
BPUM_3203___t 495 TATTAAATACGCACA--CAGCATTACATGCTCTTCTCAATATTTACACGA 542
BSNT_05409___ 537 GGAAGTAGACAAAAAACTGACTGCAGGACGAGA----AAAG----GTTCA 578
..||.| |||||||| |.|||..|| |||| |||| |||
BPUM_3203___t 543 TCAAAT---CAAAAAAC-GTCTGATGG--GAGAACCGAAAGATGTGTT-- 584
BSNT_05409___ 579 TACAGTGGAAAACGGTGTGGAGTATGAGCTGTTTTCTGCAAATAAACAAG 628
||||||||||||.|||||.|||||.||..|||| |||.|| ||.|||.
BPUM_3203___t 585 TACAGTGGAAAATGGTGTCGAGTACGATGTGTT---TGCGAA-AAGCAAT 630
BSNT_05409___ 629 CTCCCG---ATCGCAG-TATACTGCAGGGGAGAGAAGGAACAGTGTTAGG 674
||.||| |..|.|| |.|.|||.|.||.|||||||||||.|||.|.||
BPUM_3203___t 631 CTTCCGTGTAAAGAAGATGTGCTGGAAGGAAGAGAAGGAACCGTGCTCGG 680
BSNT_05409___ 675 TTTTATCGGCGGAATTAAACCGAAGCTCGATTTTAAAATGATTGAAGAAG 724
|||||||||.|||||.|||||.||.|||||||||.|.|||||.|..||||
BPUM_3203___t 681 TTTTATCGGAGGAATCAAACCAAAACTCGATTTTGACATGATGGCTGAAG 730
BSNT_05409___ 725 CCGC---CCTGCAAAAGCCTGATTGGACATTTTTATGGGTTGGCCCGGAT 771
|.|| |.||| .||||||||||||||||||||..||.||.||||||
BPUM_3203___t 731 CTGCTCGCATGC---GGCCTGATTGGACATTTTTATTTGTCGGTCCGGAT 777
BSNT_05409___ 772 GCCACCAATGGTGACGTTTCGTTTCAAGA-GCTGCTGAGGCTTCCCAATG 820
|..||.|||||.||....||.|||||..| || |||.|..||.||.||||
BPUM_3203___t 778 GGAACGAATGGAGATCCATCTTTTCAGCATGC-GCTTAAACTGCCTAATG 826
BSNT_05409___ 821 TTATATGGACCGG-CCCGGCGGATCCGAAAGAAGTTCC-GCATTTTATGG 868
|.||.|||||.|| .|.|..|.|.|.| |||||||.|| || ||.||||.
BPUM_3203___t 827 TGATTTGGACAGGAGCTGTTGCAGCAG-AAGAAGTGCCTGC-TTATATGA 874
BSNT_05409___ 869 AGCTTATCGACATTGGCATCATGCCTTATAAACAATCACCGTATAATCAA 918
||||.||.||..|.||.||.|||||.||.||||||||.||.|||||||||
BPUM_3203___t 875 AGCTGATTGATGTAGGGATGATGCCATACAAACAATCCCCTTATAATCAA 924
BSNT_05409___ 919 GCTGTGTTTCCACTGAAACTATTTGAATTTTTAGCGGCAGGAAAACCTGT 968
||.|||||.|||||.||.||.|.||||||||||||.||.||||.|||.||
BPUM_3203___t 925 GCGGTGTTCCCACTCAAGCTTTATGAATTTTTAGCTGCTGGAATACCGGT 974
BSNT_05409___ 969 CGTCGGCTCTAATCTTCCGTCAACCTCAAAAATGC---AAAAGCCGTATG 1015
.|||||.|..|||||.||.|||| |..|||.|| ||.||..|.|||
BPUM_3203___t 975 TGTCGGTTTAAATCTCCCTTCAA---CGGAAAGGCTAAAAGAGAAGAATG 1021
BSNT_05409___ 1016 TATACGAATATGTAGAAGGTGATCATCCAATTG---ATTTTATAGCAGCT 1062
|.||.||||||.|||..||.|||.|||| || ..||.||||.|||.
BPUM_3203___t 1022 TGTATGAATATTTAGTGGGCGATGATCC---TGCGCTCTTCATAGAAGCC 1068
BSNT_05409___ 1063 TGTGAAAAAGTTCTCGAACAAAACGGA-GAC----------GAAACCTAT 1101
||...||||||..|| |.|||||..|| ||| ||.|||||
BPUM_3203___t 1069 TGCCTAAAAGTGATC-AGCAAAAAAGACGACACGGCTTTTAGACACCTA- 1116
BSNT_05409___ 1102 AAAGAAATGCGCCGAAACATCGCTCGC----ACACAAGATTGGAATTGC- 1146
|.|.||| ||||| || |.|.||||||||.| .||
BPUM_3203___t 1117 AGACAAA---GCCGA----------GCGAAGAAAAAAGATTGGCA-CGCG 1152
BSNT_05409___ 1147 TTATTTAGACAAATTAT-GAAATATACAGGGATTCAAAAACATGCGTAG 1194
.|.||.|.|.|.||..| |||.|| ||....|||.||.||.|.||.||.
BPUM_3203___t 1153 CTGTTCACAAACATGGTGGAACTA-ACGAATATTAAAGAAAACGCATAA 1200
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