Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05407 and BPUM_3202
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:02
# Commandline: needle
# -asequence dna-align/BSNT_05407___tagO.1.24716.seq
# -bsequence dna-align/BPUM_3202___mraY2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05407___tagO-BPUM_3202___mraY2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05407___tagO-BPUM_3202___mraY2.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05407___tagO
# 2: BPUM_3202___mraY2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1098
# Identity: 801/1098 (73.0%)
# Similarity: 801/1098 (73.0%)
# Gaps: 51/1098 ( 4.6%)
# Score: 2862.5
#
#
#=======================================
BSNT_05407___ 1 ATGCTTGACGAACGCATGATTCGCATTGTTGTTGCGTTTATTGTCTCGCT 50
|||..|.||||||| |||.||.| |.||||||.|||||||.||
BPUM_3202___m 1 ATGGATTACGAACG-------CGCCTTAT--TAGCGTTTTTTGTCTCTCT 41
BSNT_05407___ 51 -GCTGACAGTTTTAATCATAACCCCAATCGTAAAAAGGATTGCGATTAAA 99
||| |||||||||||..|.||.||||||||.||.|.|.||||.|||||.
BPUM_3202___m 42 GGCT-ACAGTTTTAATTGTGACACCAATCGTCAAGAAGTTTGCAATTAAG 90
BSNT_05407___ 100 ATAGGTGCAGTTGACCAGCCCAGCAATCGAAAAGTACATGACAAAATCAT 149
||.||||||||.||||||||.|..||.||||||||.|||||.|||.|.||
BPUM_3202___m 91 ATTGGTGCAGTGGACCAGCCGAATAAACGAAAAGTTCATGATAAAGTAAT 140
BSNT_05407___ 150 GCCCCGCATGGGCGGGCTGGCCATATTTATCGGGGTGG------------ 187
|||.||.|||||.||..||||.||.|||||.||.||.|
BPUM_3202___m 141 GCCTCGAATGGGTGGTTTGGCAATTTTTATTGGAGTAGCGGCTGGAGCAT 190
BSNT_05407___ 188 TTGCAGGCGTGCTTGCATCCGGTATTTACA-CAGAAACAAGGATGACGGC 236
|.|||||||.||| ||.|.|||| .|.||| ||.||.||
BPUM_3202___m 191 TAGCAGGCGGGCT--------GTTTCTACATAATAAA-----ATTACAGC 227
BSNT_05407___ 237 AATTACAGTCGGAGC---ATTCATCATTATTGTGTTAGGTATTCTTGACG 283
||||.||||.||.|| |.|||||.|.||| ||||||||..||||.|
BPUM_3202___m 228 AATTTCAGTTGGTGCCGTACTCATCGTCATT---TTAGGTATATTTGATG 274
BSNT_05407___ 284 ATAAATATCAATTAAGTGCAAAAGTTAAGTTTTTGATTCAATTAGGTGTA 333
||||||||.|.||||||||||.|.||||.|||.|..|.|||.|...|||.
BPUM_3202___m 275 ATAAATATAATTTAAGTGCAAGATTTAAATTTCTCGTACAAGTCCTTGTT 324
BSNT_05407___ 334 GCCATTATGGTTGTAAGCACTGGCTTAAAAATGGACTTTTTCTCAGTACC 383
||...|.||.||||.|||||.|||||||||||||||||.|||||.||.||
BPUM_3202___m 325 GCTTGTTTGATTGTGAGCACGGGCTTAAAAATGGACTTCTTCTCTGTTCC 374
BSNT_05407___ 384 TTTTTTAACAGAACGATTTGAGTTAGGATGGATGGCTTATCCGCTGACGG 433
||||||||||||.|||.|||||||||||||||||||||||||.||.||.|
BPUM_3202___m 375 TTTTTTAACAGATCGAATTGAGTTAGGATGGATGGCTTATCCCCTCACCG 424
BSNT_05407___ 434 TATTATGGATTGTCGGCATCACGAACGCAATTAACCTGATTGATGGATTG 483
|..|||||||||||||.||.||.||.||.||.||..|.|||||.||..|.
BPUM_3202___m 425 TGCTATGGATTGTCGGTATTACAAATGCCATCAATTTAATTGACGGCCTT 474
BSNT_05407___ 484 GATGGCCTTGCTGCCGGTCTTTCTGTTATCGGCCTGTCAACGATCGCTGT 533
|||||.||.|||||||||.|.|||||.|||||..|.|||||.||.||.||
BPUM_3202___m 475 GATGGACTAGCTGCCGGTATATCTGTCATCGGTTTATCAACAATTGCAGT 524
BSNT_05407___ 534 CATGGCGCTATCCGGCGGAAAAG-TGCTCATTCTGTCACTCTCATTAGTC 582
.||||| .|.|.|.||.||.||| |.||.|||||.||..|.||..|.|||
BPUM_3202___m 525 GATGGC-ATTTTCTGCTGACAAGATTCTGATTCTTTCTTTATCTCTTGTC 573
BSNT_05407___ 583 GTTATTGCCAGCACGCTGGGGTTTTTGTTTTACAACTTCCACCCGGCAAA 632
||.||||.|||.|||.|.||.|||.|.|||||||||||.||.|||||.||
BPUM_3202___m 574 GTCATTGGCAGTACGATCGGCTTTCTCTTTTACAACTTTCATCCGGCGAA 623
BSNT_05407___ 633 AATCTTTATGGGAGATACGGGATCACTTTTTTTAGGGTATAGTATTTCGA 682
.||.||||||||||||||.||.||.||.||||||||.||||..||.|||.
BPUM_3202___m 624 GATTTTTATGGGAGATACCGGTTCGCTATTTTTAGGCTATATGATCTCGG 673
BSNT_05407___ 683 TTCTTTCATTATTAGGCCTGTATAAAAGTGTCACATTGTTCAGTATCGTT 732
|.||.|||.|.||||||.|.||.|||||||||||.|||||.|||.|.|||
BPUM_3202___m 674 TGCTGTCACTTTTAGGCTTATACAAAAGTGTCACTTTGTTTAGTGTTGTT 723
BSNT_05407___ 733 ATCCCGATTATTATATTAGGCGTACCGATTTTTGATACAACATTTGCTAT 782
.|.||..|.||.||..||||.||.||.||.||||||||.||.|||||.||
BPUM_3202___m 724 GTTCCTGTGATCATTCTAGGTGTTCCTATATTTGATACGACCTTTGCGAT 773
BSNT_05407___ 783 CATCAGGAGAATATTAAACAAACAGCCGATTTCAGCGCCTGATAAGTCGC 832
|||.|||.|.||||||||||||||||||||||||.|.||.||.||.||.|
BPUM_3202___m 774 CATTAGGCGTATATTAAACAAACAGCCGATTTCATCACCGGACAAATCTC 823
BSNT_05407___ 833 ATATTCACCATAGACTGATGGCCTTTGGCCTTTCACATCGGATGTCAGTC 882
|||||||.||||||||.||||||||.|||.|.||.|||||.|||.|.|||
BPUM_3202___m 824 ATATTCATCATAGACTAATGGCCTTCGGCTTGTCCCATCGCATGGCTGTC 873
BSNT_05407___ 883 TTAGTTATTTATTTGATTGGATTTATTTTCAGTATCAGTGCGATTGTGCT 932
.|.||.|||||..|||||||.||..|.||.||..|.|||||||||.||||
BPUM_3202___m 874 ATCGTGATTTACATGATTGGGTTAGTCTTTAGCTTAAGTGCGATTTTGCT 923
BSNT_05407___ 933 TAAAAGTGCCACAATTTGGCTTTCTTTGTTTATTATCTTCATTTTA---A 979
.|.|||.||.||.||||||.|.||..|..|.|||||.| ||||| .
BPUM_3202___m 924 GACAAGCGCGACCATTTGGTTATCGCTCATCATTATTT---TTTTACTGG 970
BSNT_05407___ 980 TCATTTTTATGCAGATCATAGCAGAAGTGACAGGACTCGTAAATGAAAAA 1029
|.||.||||||||..|.||.||.|||||.||.||..|.||.||.|||.|.
BPUM_3202___m 971 TGATGTTTATGCAAGTGATTGCGGAAGTTACGGGTTTGGTCAACGAAGAG 1020
BSNT_05407___ 1030 TTTAAGCCGTTTACGAAGTTTTATAAACGTCTGGTGAAAAGGAATTAA 1077
||.||.||.||||||||.|||||||||||..||||.|||||..|.|||
BPUM_3202___m 1021 TTCAAACCATTTACGAAATTTTATAAACGAATGGTCAAAAGACAATAA 1068
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