Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05396 and BPUM_3200

See Amino acid alignment / Visit BSNT_05396 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:01
# Commandline: needle
#    -asequence dna-align/BSNT_05396___yvyE.1.24716.seq
#    -bsequence dna-align/BPUM_3200.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05396___yvyE-BPUM_3200.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05396___yvyE-BPUM_3200.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05396___yvyE
# 2: BPUM_3200
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity:     473/707 (66.9%)
# Similarity:   473/707 (66.9%)
# Gaps:          91/707 (12.9%)
# Score: 1478.0
# 
#
#=======================================

BSNT_05396___      1 ATGCTGCACAGCTATTTTACTGTGAAAGAAG--CAGGAGAACACGAGATT     48
                     .|||||.|..|||||.||||.||  ||.|||  ..||.||.||.|||||.
BPUM_3200          1 TTGCTGAATCGCTATCTTACAGT--AAAAAGTCGTGGCGAGCATGAGATC     48

BSNT_05396___     49 GTTATAGAAAAATCGCGTTTTATCTGTCATTTA-AGCCGTG-TTTCTACC     96
                     ||.||.||||||||.||||||||.||||||.|| || |||| |.||| |.
BPUM_3200         49 GTCATTGAAAAATCACGTTTTATTTGTCATATACAG-CGTGCTGTCT-CA     96

BSNT_05396___     97 GAACAAGAGGCACAGGAATTTATACAGAAAATAAAGAAACAGCACTGGAA    146
                     |||.||||.|||||.|.|||||||||....||.||.|||||.||.|||||
BPUM_3200         97 GAAGAAGAAGCACAAGCATTTATACAATCCATTAAAAAACAACATTGGAA    146

BSNT_05396___    147 TGCGACTCATAATTGCTCGGCTTATGTTATTGGCGAGAATGATCATATCC    196
                     |||.||.||||||||.||.||.|||.|.|||||.||..||||.|..||.|
BPUM_3200        147 TGCCACACATAATTGTTCTGCCTATCTCATTGGAGAACATGACCTGATTC    196

BSNT_05396___    197 AAAAAGCCAATGATGACGGGGAACCAAGCGGTACAGCGGGAGTGCCGATG    246
                     |||||||.||||||||.||.||||||||.|||||||||||.|||||.|||
BPUM_3200        197 AAAAAGCGAATGATGATGGTGAACCAAGTGGTACAGCGGGTGTGCCCATG    246

BSNT_05396___    247 CTCGAGGTTTTAAAGAAACGCAGACTGAAGGATAC--TTGCGCCGTCGTT    294
                     ||.||.||.|||||.|||||.|..|||||.|||||  ||  |..||.||.
BPUM_3200        247 CTTGAAGTGTTAAAAAAACGGAAGCTGAAAGATACAGTT--GTAGTAGTC    294

BSNT_05396___    295 ACACGCTACTTCGGAGGCATTAAGCTTGGTGCTGGCGGATTAATTCGCGC    344
                     ||.||.||.|||||.||.||||||||.||.||.||.|||||.|||||.||
BPUM_3200        295 ACTCGTTATTTCGGCGGTATTAAGCTAGGCGCCGGTGGATTGATTCGTGC    344

BSNT_05396___    345 TTATGGGAAATCAGTGTCTGAAGGATTAAATCATATAGGTGTTGTAGAAC    394
                     .||.||.|||||.||.||.||||...|.||.|||.|.||..|.|||||.|
BPUM_3200        345 CTACGGAAAATCTGTATCAGAAGCCATCAACCATGTTGGGATGGTAGAGC    394

BSNT_05396___    395 GGAAGC----TTATGCGAATCATGCATACTTCTGCAGATTACACATGGCT    440
                         ||    |.|||||.|..|||||.||..|...||||||.||||||||
BPUM_3200        395 ----GCTGTTTAATGCGTACGATGCACACAACAATAGATTATACATGGCT    440

BSNT_05396___    441 TGGCAAGATTGAAAATGAATTAAGGGAGTCACAATTTCTGTTAAAGGAAA    490
                     |||.|||.|.||.|||||..|.||.|..|||...||||.|.||||.||||
BPUM_3200        441 TGGAAAGGTAGAGAATGAGCTTAGAGCCTCATCTTTTCAGCTAAAAGAAA    490

BSNT_05396___    491 TCCATTATGCGGAAAACGTTGAATTT----GAAGTATACGTAAATGAGAA    536
                     |.||||||||.|||.|.|||  ||||    ||.||||  |||.|  ||||
BPUM_3200        491 TTCATTATGCAGAAGATGTT--ATTTTTGAGACGTAT--GTAGA--AGAA    534

BSNT_05396___    537 A---------AGAATTTCAGAATACTCTCAATGGATTTTAAATT----TA    573
                     |         ||.|.||||       .|.|||||||    .|.|    |.
BPUM_3200        535 ACACAAACAGAGCAGTTCA-------TTGAATGGAT----GACTGAGCTG    573

BSNT_05396___    574 ACGAATGGATCA----TGTTATACTAAA-AAGG-GTATTTTGATATATCT    617
                     ||.||||||  |    |||  |||.||| |||| |.|  .||||.|||.|
BPUM_3200        574 ACAAATGGA--AAGAGTGT--TACAAAAGAAGGCGAA--CTGATTTATTT    617

BSNT_05396___    618 TGAAAA--ACAAGTTGAAAATC---AAAAGGAGA---ATAAATGA-----    654
                     .|||||  |||  |||   .||   .||||||||   ||.||||.     
BPUM_3200        618 AGAAAAGGACA--TTG---GTCCGATAAAGGAGACAGATGAATGGCACAA    662

BSNT_05396___    654 -------    654
                            
BPUM_3200        663 CGAGTAA    669


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