Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05396 and BPUM_3200
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:01
# Commandline: needle
# -asequence dna-align/BSNT_05396___yvyE.1.24716.seq
# -bsequence dna-align/BPUM_3200.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05396___yvyE-BPUM_3200.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05396___yvyE-BPUM_3200.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05396___yvyE
# 2: BPUM_3200
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity: 473/707 (66.9%)
# Similarity: 473/707 (66.9%)
# Gaps: 91/707 (12.9%)
# Score: 1478.0
#
#
#=======================================
BSNT_05396___ 1 ATGCTGCACAGCTATTTTACTGTGAAAGAAG--CAGGAGAACACGAGATT 48
.|||||.|..|||||.||||.|| ||.||| ..||.||.||.|||||.
BPUM_3200 1 TTGCTGAATCGCTATCTTACAGT--AAAAAGTCGTGGCGAGCATGAGATC 48
BSNT_05396___ 49 GTTATAGAAAAATCGCGTTTTATCTGTCATTTA-AGCCGTG-TTTCTACC 96
||.||.||||||||.||||||||.||||||.|| || |||| |.||| |.
BPUM_3200 49 GTCATTGAAAAATCACGTTTTATTTGTCATATACAG-CGTGCTGTCT-CA 96
BSNT_05396___ 97 GAACAAGAGGCACAGGAATTTATACAGAAAATAAAGAAACAGCACTGGAA 146
|||.||||.|||||.|.|||||||||....||.||.|||||.||.|||||
BPUM_3200 97 GAAGAAGAAGCACAAGCATTTATACAATCCATTAAAAAACAACATTGGAA 146
BSNT_05396___ 147 TGCGACTCATAATTGCTCGGCTTATGTTATTGGCGAGAATGATCATATCC 196
|||.||.||||||||.||.||.|||.|.|||||.||..||||.|..||.|
BPUM_3200 147 TGCCACACATAATTGTTCTGCCTATCTCATTGGAGAACATGACCTGATTC 196
BSNT_05396___ 197 AAAAAGCCAATGATGACGGGGAACCAAGCGGTACAGCGGGAGTGCCGATG 246
|||||||.||||||||.||.||||||||.|||||||||||.|||||.|||
BPUM_3200 197 AAAAAGCGAATGATGATGGTGAACCAAGTGGTACAGCGGGTGTGCCCATG 246
BSNT_05396___ 247 CTCGAGGTTTTAAAGAAACGCAGACTGAAGGATAC--TTGCGCCGTCGTT 294
||.||.||.|||||.|||||.|..|||||.||||| || |..||.||.
BPUM_3200 247 CTTGAAGTGTTAAAAAAACGGAAGCTGAAAGATACAGTT--GTAGTAGTC 294
BSNT_05396___ 295 ACACGCTACTTCGGAGGCATTAAGCTTGGTGCTGGCGGATTAATTCGCGC 344
||.||.||.|||||.||.||||||||.||.||.||.|||||.|||||.||
BPUM_3200 295 ACTCGTTATTTCGGCGGTATTAAGCTAGGCGCCGGTGGATTGATTCGTGC 344
BSNT_05396___ 345 TTATGGGAAATCAGTGTCTGAAGGATTAAATCATATAGGTGTTGTAGAAC 394
.||.||.|||||.||.||.||||...|.||.|||.|.||..|.|||||.|
BPUM_3200 345 CTACGGAAAATCTGTATCAGAAGCCATCAACCATGTTGGGATGGTAGAGC 394
BSNT_05396___ 395 GGAAGC----TTATGCGAATCATGCATACTTCTGCAGATTACACATGGCT 440
|| |.|||||.|..|||||.||..|...||||||.||||||||
BPUM_3200 395 ----GCTGTTTAATGCGTACGATGCACACAACAATAGATTATACATGGCT 440
BSNT_05396___ 441 TGGCAAGATTGAAAATGAATTAAGGGAGTCACAATTTCTGTTAAAGGAAA 490
|||.|||.|.||.|||||..|.||.|..|||...||||.|.||||.||||
BPUM_3200 441 TGGAAAGGTAGAGAATGAGCTTAGAGCCTCATCTTTTCAGCTAAAAGAAA 490
BSNT_05396___ 491 TCCATTATGCGGAAAACGTTGAATTT----GAAGTATACGTAAATGAGAA 536
|.||||||||.|||.|.||| |||| ||.|||| |||.| ||||
BPUM_3200 491 TTCATTATGCAGAAGATGTT--ATTTTTGAGACGTAT--GTAGA--AGAA 534
BSNT_05396___ 537 A---------AGAATTTCAGAATACTCTCAATGGATTTTAAATT----TA 573
| ||.|.|||| .|.||||||| .|.| |.
BPUM_3200 535 ACACAAACAGAGCAGTTCA-------TTGAATGGAT----GACTGAGCTG 573
BSNT_05396___ 574 ACGAATGGATCA----TGTTATACTAAA-AAGG-GTATTTTGATATATCT 617
||.|||||| | ||| |||.||| |||| |.| .||||.|||.|
BPUM_3200 574 ACAAATGGA--AAGAGTGT--TACAAAAGAAGGCGAA--CTGATTTATTT 617
BSNT_05396___ 618 TGAAAA--ACAAGTTGAAAATC---AAAAGGAGA---ATAAATGA----- 654
.||||| ||| ||| .|| .|||||||| ||.||||.
BPUM_3200 618 AGAAAAGGACA--TTG---GTCCGATAAAGGAGACAGATGAATGGCACAA 662
BSNT_05396___ 654 ------- 654
BPUM_3200 663 CGAGTAA 669
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