Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05394 and BPUM_3198
See
Amino acid alignment /
Visit
BSNT_05394 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:01
# Commandline: needle
# -asequence dna-align/BSNT_05394___degU.1.24716.seq
# -bsequence dna-align/BPUM_3198___degU.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05394___degU-BPUM_3198___degU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05394___degU-BPUM_3198___degU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05394___degU
# 2: BPUM_3198___degU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 690
# Identity: 564/690 (81.7%)
# Similarity: 564/690 (81.7%)
# Gaps: 0/690 ( 0.0%)
# Score: 2316.0
#
#
#=======================================
BSNT_05394___ 1 GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGA 50
||||||||||||||.|||||.|||||.||.||.||.||.|||||.|||||
BPUM_3198___d 1 GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGA 50
BSNT_05394___ 51 AGGTGTTAAACGGATATTGGATTTTGAACCTACCTTTGAAGTGGTAGCCG 100
||||||.||||||||.||.||||||||||||||.||||||||.||.||.|
BPUM_3198___d 51 AGGTGTCAAACGGATTTTAGATTTTGAACCTACTTTTGAAGTAGTTGCAG 100
BSNT_05394___ 101 AAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCT 150
||||.||.|||||.||||||||.||.|||||.||.||.|||||||||||.
BPUM_3198___d 101 AAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCA 150
BSNT_05394___ 151 GATGTTGTGATCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGC 200
||||||||.||.|||||.||.||||||||.||.||.||||||||.||.||
BPUM_3198___d 151 GATGTTGTCATTATGGACATTAATATGCCGAATGTTAATGGTGTAGAGGC 200
BSNT_05394___ 201 TACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTAATTATTCTAT 250
||||||.|||||.||.|||||.|||||.|||||.|||||.||||||||||
BPUM_3198___d 201 TACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTCATTATTCTAT 250
BSNT_05394___ 251 CAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCA 300
|.|||||.||.||||||||.|||||.||||||||..||||||||||.|||
BPUM_3198___d 251 CTATTCATGACGACGAAAACTATGTGACACATGCATTGAAAACAGGAGCA 300
BSNT_05394___ 301 AGAGGTTATCTGCTGAAAGAGATGGATGCTGATACATTAATTGAAGCGGT 350
|||||.||||||.|.|||||.||||||||.||.||..|.||||||||.||
BPUM_3198___d 301 AGAGGCTATCTGTTAAAAGAAATGGATGCAGACACGCTCATTGAAGCAGT 350
BSNT_05394___ 351 TAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA 400
.|||||.||.|||||.||.||||||||..|.||||||||.||||||||.|
BPUM_3198___d 351 GAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA 400
BSNT_05394___ 401 ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACAC 450
||.|.||.||.||||||||.|||||.||.||.||.||.|||||.|||||.
BPUM_3198___d 401 ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACAT 450
BSNT_05394___ 451 CCTCAACATGAGGTTTACCCTGAAATCCGCAGACCATTACATATTTTAAC 500
||.||.|||||.||.||.||||||||.|||||||||.|.|||||.|||||
BPUM_3198___d 451 CCGCAGCATGAAGTATATCCTGAAATTCGCAGACCACTTCATATCTTAAC 500
BSNT_05394___ 501 TAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACC 550
.||.||.||.||.|||||.||.||.|||.|.||.||||||||.|||||..
BPUM_3198___d 501 GAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATA 550
BSNT_05394___ 551 GCGGAATTGGTGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCAT 600
|.|||||||||||.||..|.|||||.||||||||.||.||.||||||||.
BPUM_3198___d 551 GAGGAATTGGTGAGTCGCTCTTTATTAGTGAGAAGACAGTCAAAAACCAC 600
BSNT_05394___ 601 GTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGACGCAAGCCGT 650
||.||.||.||||||||||||||.||||||||||||||.||.|||||.||
BPUM_3198___d 601 GTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTACACAAGCTGT 650
BSNT_05394___ 651 TGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG 690
|||.||.||.|||||.||.||||||||||||||||||||.
BPUM_3198___d 651 TGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA 690
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.