Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05386 and BPUM_3191
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:01
# Commandline: needle
# -asequence dna-align/BSNT_05386___yvyG.1.24716.seq
# -bsequence dna-align/BPUM_3191___yvyG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05386___yvyG-BPUM_3191___yvyG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05386___yvyG-BPUM_3191___yvyG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05386___yvyG
# 2: BPUM_3191___yvyG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 551
# Identity: 306/551 (55.5%)
# Similarity: 306/551 (55.5%)
# Gaps: 136/551 (24.7%)
# Score: 760.0
#
#
#=======================================
BSNT_05386___ 1 ATGTCAGCGAAGGCAATTATTGAACAATTGAAGCGACTTTGCGTTCTGCA 50
|||||||..||...|||.||||||.|..||.|.||.||.|..|...||||
BPUM_3191___y 1 ATGTCAGTTAAAATAATCATTGAAGAGCTGCATCGTCTCTATGGATTGCA 50
BSNT_05386___ 51 TGAGCACCTGCTCACGCTGTCTGAAGAAAAGACGGAAGCGCT-CAAAGCC 99
|||.||.||..|.|.||||||..|.||.||.||.|||..||| .|||||
BPUM_3191___y 51 TGAACAGCTTTTGAAGCTGTCAAAGGATAAAACAGAAATGCTGAAAAGC- 99
BSNT_05386___ 100 GGCAAAACAAAAGAG---------CTTTCTAACATTTTGACAAAAGAGCA 140
||.||| |||||..|..||||||....|||.||
BPUM_3191___y 100 ---------AATGAGATTGATGCTCTTTCAGAGGTTTTGAATTTAGAACA 140
BSNT_05386___ 141 AAAATATATTCAAGCAATCACGCAGACAGAAGATGACCGGATCAAAACAA 190
||||||||||||.||.||..|.||...|||||| |||||.|
BPUM_3191___y 141 AAAATATATTCAGGCCATTTCTCAATTAGAAGA----------AAAACGA 180
BSNT_05386___ 191 CTT----CGGCCTTTCTCGGATATAGCGAAAATAAT---------ACTAT 227
.|| ||.|..||| .||.|....|||||.|| |||||
BPUM_3191___y 181 ATTGAAGCGACAGTTC---AATTTTTACAAAATGATGAAACACCAACTAT 227
BSNT_05386___ 228 ATCCGCATGTATCGCCAAAACCTCAGGCAGTGAA----------AAGGAA 267
..||||.||||||| ||| |||| |||| || |||
BPUM_3191___y 228 CACCGCGTGTATCG---AAA----AGGC--TGAAGGTTCGGATCAA-GAA 267
BSNT_05386___ 268 GAGCTGGAACAACTATACGAATCTCTTTCT----CAAGTTCTCGGACGT- 312
||||| .||.||.||.| |||.||....|||.|
BPUM_3191___y 268 GAGCT--------------CATTTCGTTATATGACAAATTAAATGACATC 303
BSNT_05386___ 313 ---------CTGAAAAAAGTAAATGAGATGAATAGGCAGCTGA-----CA 348
||||||.|.||||||||..||||.|..|||||.| ||
BPUM_3191___y 304 ATGGTGGAACTGAAAGATGTAAATGAACTGAACAAACAGCTCATTCAGCA 353
BSNT_05386___ 349 AGAGACGCGCTGCAATTCATCTCTATTTCGTACGATATGCTGGTT---CC 395
| .||||.|||||.||.||..|..|.|.|||| ||.||| ||
BPUM_3191___y 354 A-----TCGCTTCAATTTATTTCACTGACATTCGAT---CTCGTTAACCC 395
BSNT_05386___ 396 ---TAAGGAAAATAACTTCAATTACAG-CAAA----TCAATTAAAGCTGA 437
|||.||||||| |.||||||.| |||| || ||.| ||
BPUM_3191___y 396 TAATAAAGAAAATA---TGAATTACGGACAAAATGGTC--TTGA----GA 436
BSNT_05386___ 438 GCT----GCCGAAA-AGCAGCCAAATGAAACTGTTTGATTCAAAAGCTTA 482
|.| |||.||| ||||| |.|....|||||||||||||.||.||
BPUM_3191___y 437 GTTCAAAGCCTAAACAGCAG----AGGGCTTTGTTTGATTCAAAGGCGTA 482
BSNT_05386___ 483 G 483
.
BPUM_3191___y 483 A 483
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