Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05385 and BPUM_3190

See Amino acid alignment / Visit BSNT_05385 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:00
# Commandline: needle
#    -asequence dna-align/BSNT_05385___flgK.1.24716.seq
#    -bsequence dna-align/BPUM_3190___flgK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05385___flgK-BPUM_3190___flgK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05385___flgK-BPUM_3190___flgK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05385___flgK
# 2: BPUM_3190___flgK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1753
# Identity:     998/1753 (56.9%)
# Similarity:   998/1753 (56.9%)
# Gaps:         461/1753 (26.3%)
# Score: 2624.0
# 
#
#=======================================

BSNT_05385___      1 ATGACATCTACCTTTATGGGGCTTGAAACTGCAAGGCG-GGCGTTA----     45
                     |||...|||||.||.|||||.||.|||||.||||...| ||..|||    
BPUM_3190___f      1 ATGGGTTCTACATTCATGGGTCTAGAAACGGCAAAAAGAGGAATTACAGC     50

BSNT_05385___     46 --AGCGCTCAGCAGGCAGCTTTAAG-CAC-TACTGCAAATAACGTGGCAA     91
                       |||||   |||||  ||||||.| ||| |    ||||.|||||..|.|
BPUM_3190___f     51 CCAGCGC---GCAGG--GCTTTATGTCACAT----CAAACAACGTCTCCA     91

BSNT_05385___     92 ATGCCAATACTGATGGTTATACAAGACAGCGGGTCTCATTGGAGGCAACG    141
                     ||||.|||||.|||||.||..|||||||..|.||..|.||..|.|||..|
BPUM_3190___f     92 ATGCAAATACAGATGGCTACTCAAGACAAAGAGTTACCTTTAAAGCAGAG    141

BSNT_05385___    142 GA--CT---------ATTTCCCTGCTGT-----ATCTAAAAACGCAGAAA    175
                     .|  ||         ||||     |.||     ||..|||.|||.|    
BPUM_3190___f    142 AATCCTTATCCAGTCATTT-----CAGTTTATGATGGAAAGACGTA----    182

BSNT_05385___    176 AAACAGCGGGACAAATGGGTACGGGCGTTCAA---GGAAAATCAGTTGAG    222
                            .||.||||||||.||.||.||||||   ||||   |.|||||.
BPUM_3190___f    183 -------TGGCCAAATGGGGACAGGAGTTCAAGTTGGAA---CCGTTGAA    222

BSNT_05385___    223 AGAATAAGAGATATCTTTCTTGA-CTACCAATACCGTCTTCAAAACAACA    271
                     |||||..||||.|.||||.|.|| || .||||...|...|||.|||||.|
BPUM_3190___f    223 AGAATTCGAGACAGCTTTTTAGATCT-GCAATTTAGAGATCATAACAATA    271

BSNT_05385___    272 --GTGCCGGA-TACTATGACACGAAGGCAAAA------GCGCTGTCCCAA    312
                       .||.|..| ||||    ||     ||||||      ||.||.||.|||
BPUM_3190___f    272 ATTTGTCTTACTACT----CA-----GCAAAATCTGACGCCCTTTCGCAA    312

BSNT_05385___    313 ATGGAAGGCGTTTTAAATGA---AACGGATGACAGCGGCTTGAACAG---    356
                     |||||.||.|||.|.|||||   .||||||||   .|||||.|||||   
BPUM_3190___f    313 ATGGAGGGAGTTATGAATGATTTGACGGATGA---AGGCTTAAACAGAGC    359

BSNT_05385___    357 -TGTGCTCAATTCGTTTTGGAATTCTCTGCAGGAATTAT-CGAATAATAC    404
                      |.||    ||....|||||||.||..|.||||...||| |||| |..|.
BPUM_3190___f    360 CTTTG----ATAACCTTTGGAAATCATTACAGGTCCTATCCGAA-ACAAA    404

BSNT_05385___    405 AAATGAAGAAA------GTGCACGTTCTGTTGTTGCTCGAAAA-----GG    443
                     |||||..||.|      .|||.|||.|.||||||     ||||     |.
BPUM_3190___f    405 AAATGCCGACACCGCTTCTGCGCGTACAGTTGTT-----AAAACAAGTGC    449

BSNT_05385___    444 ACAAGCT---GTAGCTGAA--ACGTTTAATTATATTTCTGAATCACTTAC    488
                     |||.|||   ||||.|.||  .|||.||.|  ||.||||   ||..|.||
BPUM_3190___f    450 ACAGGCTTTAGTAGATCAATTCCGTCTACT--TAATTCT---TCTTTAAC    494

BSNT_05385___    489 AAATGTCCAATCGAATTTAAAAGCAGAGCTAAATACAACTG-------TG    531
                     ||...|.|||..||||||||||.||||.||..||.||||.|       ||
BPUM_3190___f    495 AACGATACAAAAGAATTTAAAAACAGAACTCGATTCAACAGCTAAAAATG    544

BSNT_05385___    532 TTGGATGTCAATTCTCTGCTT-TCTCAGTTAAACAGTT----TAAATAAG    576
                     |  ||...|.|||      || ||||    |||.||.|    |.|||||.
BPUM_3190___f    545 T--GAACACGATT------TTATCTC----AAATAGATGAAGTGAATAAA    582

BSNT_05385___    577 CAAATTGCACAAGTAGAGCCGGTCGGGCTTCTTCCGAATG-GCTTATATG    625
                     ||.||||||..|||.|||||...|||...||||||.|||| .||| ||||
BPUM_3190___f    583 CAGATTGCAGCAGTTGAGCCAAACGGATATCTTCCAAATGATCTT-TATG    631

BSNT_05385___    626 --ACCAGCGAGATTTGCTGATCGATAAATTATCCTCAATGGTTGATATCA    673
                       |||  ||.|||..|.|..|.|||.|||||||.|||.|.||||||||.|
BPUM_3190___f    632 ATACC--CGTGATGCGTTAGTAGATCAATTATCTTCATTTGTTGATATTA    679

BSNT_05385___    674 AAGTCAGCTACAACAAATCAGGCGGGAATGCACTTGCATCTGCTGAAGGA    723
                     ||||.||||||||...|||.||||||||||||||...|..||||||||||
BPUM_3190___f    680 AAGTGAGCTACAATCCATCTGGCGGGAATGCACTCAAAATTGCTGAAGGA    729

BSNT_05385___    724 ACTGTATCA--ATTGAAATCCTTGATAAAAATAAACAGTC-GCTAGGAAC    770
                     ||||  |||  ||.||.||..|||.|..||||..|||.|| ||| |||||
BPUM_3190___f    730 ACTG--TCAACATCGATATTATTGGTGCAAATGGACAATCTGCT-GGAAC    776

BSNT_05385___    771 TGTTTTGGACGGTAAAAATTACGAGGTT--------TCAGAACTTGCAGC    812
                     ..|||||.|.||    ||||||||            ||.|||||    ||
BPUM_3190___f    777 GATTTTGAATGG----AATTACGA----ACGAAAAATCTGAACT----GC    814

BSNT_05385___    813 CAA----CTATGATAATGAAACTGG----GTTAGTATCAAGT-ATTTCAA    853
                     .||    ||||||||||..|||.||    |||      ||.| |.|||||
BPUM_3190___f    815 AAATCTCCTATGATAATACAACGGGACTTGTT------AACTCACTTCAA    858

BSNT_05385___    854 -TCGGGGATACAGC--TGTGCAGGCGGAGTCCTTTAGCAGCAAGGGATCC    900
                      ||||....|||.|  | |||| ||.||     |.|||..||||.||   
BPUM_3190___f    859 TTCGGAACAACAACCAT-TGCA-GCAGA-----TCAGCTTCAAGTGA---    898

BSNT_05385___    901 CTTTT--------AGGATTTATAGAGTCTTACGGGTATATAACAGCAGAC    942
                     .|..|        ||.|.||.|.|||.||||.||.||.||          
BPUM_3190___f    899 ATGGTAAAGTAAAAGCACTTGTTGAGGCTTATGGCTACAT----------    938

BSNT_05385___    943 GGCCAA--------GAAAAGGGCGTATACCCGGAAATGCTTTCTGATCTT    984
                      |.|||        |||||.||..|.||.||.|||||||||.|.||.||.
BPUM_3190___f    939 -GTCAAATGGTACTGAAAAAGGTATGTATCCAGAAATGCTTGCAGAGCTG    987

BSNT_05385___    985 GACAATATGGCGCTTGAATTCGCGAAAG------------CTTTCAATGA   1022
                     ||            ||||.|.||..|||            |.||.||.||
BPUM_3190___f    988 GA------------TGAAGTAGCACAAGTATTTATGGATACATTTAACGA   1025

BSNT_05385___   1023 AGTGCA----CAG-----------AAATGGTGTGACCAAGAGCGGTGAAC   1057
                     .|||||    |||           ||||||      ||..|||||   ||
BPUM_3190___f   1026 TGTGCATAAGCAGGGGTACACGTTAAATGG------CACAAGCGG---AC   1066

BSNT_05385___   1058 AAGGCGGAGACTTTTTTGATTTTACTGGCGGTGAA----ACTGAACCTGC   1103
                     |      |||||||||||||.||       |.|||    |.||||     
BPUM_3190___f   1067 A------AGACTTTTTTGATATT-------GAGAATAACAATGAA-----   1098

BSNT_05385___   1104 C-------AAGG-------GCGCGGCGGGCAAGATCAAAGTGGCTGACAG   1139
                             ||||       ||.||        .||.||||||..|||...
BPUM_3190___f   1099 -TTAAATAAAGGATTAGCTGCTCG--------TATTAAAGTGAGTGATGT   1139

BSNT_05385___   1140 CATATTAGATTCAAAAGGCGCA-AACATTGC----TTTCTCACTGACTGG   1184
                     |||.||||..||||.||    | ||.||.||    |.|||||.|.|    
BPUM_3190___f   1140 CATTTTAGCATCAACAG----ATAATATCGCAGCATCTCTCAATCA----   1181

BSNT_05385___   1185 TGCAGCCAACGATAACGCA-------------AATGCTACAAAATTAGCA   1221
                                  ||||||             ||||||||.|||||||||
BPUM_3190___f   1182 -------------AACGCAAGGTGACGGTTCGAATGCTACGAAATTAGCA   1218

BSNT_05385___   1222 AAT--------------GTTTTAACC-------GGTAAAATAACCATTAA   1250
                     |||              |||   |||       ||.||.|.|||    ||
BPUM_3190___f   1219 AATATACAAGACCTGAAGTT---ACCAATCGGTGGCAATACAAC----AA   1261

BSNT_05385___   1251 CGGTAAAGAAACTAGTGTTTTAGATTATT------ATGCGGGTCTGATTG   1294
                     ||.|..||              |||||.|      |||      |.||||
BPUM_3190___f   1262 CGATCCAG--------------GATTACTACCAAAATG------TCATTG   1291

BSNT_05385___   1295 GCGAGCTAGGGATCGAAGCTCAAGAGGCTAATCGAC-TGGCGTCTAATAC   1343
                     ..|||.|.|||||      ||||| ||..||...|| ||.|| ||     
BPUM_3190___f   1292 CTGAGATGGGGAT------TCAAG-GGAAAAAGAACATGACG-CT-----   1328

BSNT_05385___   1344 AGAAA-CA---CAGCTTAATGATGCTGAC-ATAAACCGTCAGCAAAT---   1385
                     ||||| ||   ||||    ||.|..||.| ||      |||||.|||   
BPUM_3190___f   1329 AGAAAGCAGTTCAGC----TGCTCTTGTCAAT------TCAGCCAATGAA   1368

BSNT_05385___   1386 --------------GAGCGCAGTTTCTTTAGACGAAGAAATGACGAATAT   1421
                                   |||.||.|||||..|.||.|||||||||||||||||
BPUM_3190___f   1369 CGTAGAATGTCGACGAGTGCTGTTTCCATTGATGAAGAAATGACGAATAT   1418

BSNT_05385___   1422 GATTCAATTCCAACACGCATACAATGCAGCTGCAAGAATGGTGACTTTAC   1471
                     |||.|||||.||.||.|||||.|||||||||||.|||.|.|||||.||||
BPUM_3190___f   1419 GATCCAATTTCAGCATGCATATAATGCAGCTGCGAGAGTTGTGACATTAC   1468

BSNT_05385___   1472 AAGACGAATTACTTGATAAAGTGATCAACGGTATGGGTGTTGGAGGAAGG   1521
                     ||||.|||.||.|.||||||||.||.|||||.||||||||.|.|||||||
BPUM_3190___f   1469 AAGATGAAATATTGGATAAAGTAATAAACGGCATGGGTGTCGTAGGAAGG   1518

BSNT_05385___   1522 TAG   1524
                     |||
BPUM_3190___f   1519 TAG   1521


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