Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05385 and BPUM_3190
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:00
# Commandline: needle
# -asequence dna-align/BSNT_05385___flgK.1.24716.seq
# -bsequence dna-align/BPUM_3190___flgK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05385___flgK-BPUM_3190___flgK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05385___flgK-BPUM_3190___flgK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05385___flgK
# 2: BPUM_3190___flgK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1753
# Identity: 998/1753 (56.9%)
# Similarity: 998/1753 (56.9%)
# Gaps: 461/1753 (26.3%)
# Score: 2624.0
#
#
#=======================================
BSNT_05385___ 1 ATGACATCTACCTTTATGGGGCTTGAAACTGCAAGGCG-GGCGTTA---- 45
|||...|||||.||.|||||.||.|||||.||||...| ||..|||
BPUM_3190___f 1 ATGGGTTCTACATTCATGGGTCTAGAAACGGCAAAAAGAGGAATTACAGC 50
BSNT_05385___ 46 --AGCGCTCAGCAGGCAGCTTTAAG-CAC-TACTGCAAATAACGTGGCAA 91
||||| ||||| ||||||.| ||| | ||||.|||||..|.|
BPUM_3190___f 51 CCAGCGC---GCAGG--GCTTTATGTCACAT----CAAACAACGTCTCCA 91
BSNT_05385___ 92 ATGCCAATACTGATGGTTATACAAGACAGCGGGTCTCATTGGAGGCAACG 141
||||.|||||.|||||.||..|||||||..|.||..|.||..|.|||..|
BPUM_3190___f 92 ATGCAAATACAGATGGCTACTCAAGACAAAGAGTTACCTTTAAAGCAGAG 141
BSNT_05385___ 142 GA--CT---------ATTTCCCTGCTGT-----ATCTAAAAACGCAGAAA 175
.| || |||| |.|| ||..|||.|||.|
BPUM_3190___f 142 AATCCTTATCCAGTCATTT-----CAGTTTATGATGGAAAGACGTA---- 182
BSNT_05385___ 176 AAACAGCGGGACAAATGGGTACGGGCGTTCAA---GGAAAATCAGTTGAG 222
.||.||||||||.||.||.|||||| |||| |.|||||.
BPUM_3190___f 183 -------TGGCCAAATGGGGACAGGAGTTCAAGTTGGAA---CCGTTGAA 222
BSNT_05385___ 223 AGAATAAGAGATATCTTTCTTGA-CTACCAATACCGTCTTCAAAACAACA 271
|||||..||||.|.||||.|.|| || .||||...|...|||.|||||.|
BPUM_3190___f 223 AGAATTCGAGACAGCTTTTTAGATCT-GCAATTTAGAGATCATAACAATA 271
BSNT_05385___ 272 --GTGCCGGA-TACTATGACACGAAGGCAAAA------GCGCTGTCCCAA 312
.||.|..| |||| || |||||| ||.||.||.|||
BPUM_3190___f 272 ATTTGTCTTACTACT----CA-----GCAAAATCTGACGCCCTTTCGCAA 312
BSNT_05385___ 313 ATGGAAGGCGTTTTAAATGA---AACGGATGACAGCGGCTTGAACAG--- 356
|||||.||.|||.|.||||| .|||||||| .|||||.|||||
BPUM_3190___f 313 ATGGAGGGAGTTATGAATGATTTGACGGATGA---AGGCTTAAACAGAGC 359
BSNT_05385___ 357 -TGTGCTCAATTCGTTTTGGAATTCTCTGCAGGAATTAT-CGAATAATAC 404
|.|| ||....|||||||.||..|.||||...||| |||| |..|.
BPUM_3190___f 360 CTTTG----ATAACCTTTGGAAATCATTACAGGTCCTATCCGAA-ACAAA 404
BSNT_05385___ 405 AAATGAAGAAA------GTGCACGTTCTGTTGTTGCTCGAAAA-----GG 443
|||||..||.| .|||.|||.|.|||||| |||| |.
BPUM_3190___f 405 AAATGCCGACACCGCTTCTGCGCGTACAGTTGTT-----AAAACAAGTGC 449
BSNT_05385___ 444 ACAAGCT---GTAGCTGAA--ACGTTTAATTATATTTCTGAATCACTTAC 488
|||.||| ||||.|.|| .|||.||.| ||.|||| ||..|.||
BPUM_3190___f 450 ACAGGCTTTAGTAGATCAATTCCGTCTACT--TAATTCT---TCTTTAAC 494
BSNT_05385___ 489 AAATGTCCAATCGAATTTAAAAGCAGAGCTAAATACAACTG-------TG 531
||...|.|||..||||||||||.||||.||..||.||||.| ||
BPUM_3190___f 495 AACGATACAAAAGAATTTAAAAACAGAACTCGATTCAACAGCTAAAAATG 544
BSNT_05385___ 532 TTGGATGTCAATTCTCTGCTT-TCTCAGTTAAACAGTT----TAAATAAG 576
| ||...|.||| || |||| |||.||.| |.|||||.
BPUM_3190___f 545 T--GAACACGATT------TTATCTC----AAATAGATGAAGTGAATAAA 582
BSNT_05385___ 577 CAAATTGCACAAGTAGAGCCGGTCGGGCTTCTTCCGAATG-GCTTATATG 625
||.||||||..|||.|||||...|||...||||||.|||| .||| ||||
BPUM_3190___f 583 CAGATTGCAGCAGTTGAGCCAAACGGATATCTTCCAAATGATCTT-TATG 631
BSNT_05385___ 626 --ACCAGCGAGATTTGCTGATCGATAAATTATCCTCAATGGTTGATATCA 673
||| ||.|||..|.|..|.|||.|||||||.|||.|.||||||||.|
BPUM_3190___f 632 ATACC--CGTGATGCGTTAGTAGATCAATTATCTTCATTTGTTGATATTA 679
BSNT_05385___ 674 AAGTCAGCTACAACAAATCAGGCGGGAATGCACTTGCATCTGCTGAAGGA 723
||||.||||||||...|||.||||||||||||||...|..||||||||||
BPUM_3190___f 680 AAGTGAGCTACAATCCATCTGGCGGGAATGCACTCAAAATTGCTGAAGGA 729
BSNT_05385___ 724 ACTGTATCA--ATTGAAATCCTTGATAAAAATAAACAGTC-GCTAGGAAC 770
|||| ||| ||.||.||..|||.|..||||..|||.|| ||| |||||
BPUM_3190___f 730 ACTG--TCAACATCGATATTATTGGTGCAAATGGACAATCTGCT-GGAAC 776
BSNT_05385___ 771 TGTTTTGGACGGTAAAAATTACGAGGTT--------TCAGAACTTGCAGC 812
..|||||.|.|| |||||||| ||.||||| ||
BPUM_3190___f 777 GATTTTGAATGG----AATTACGA----ACGAAAAATCTGAACT----GC 814
BSNT_05385___ 813 CAA----CTATGATAATGAAACTGG----GTTAGTATCAAGT-ATTTCAA 853
.|| ||||||||||..|||.|| ||| ||.| |.|||||
BPUM_3190___f 815 AAATCTCCTATGATAATACAACGGGACTTGTT------AACTCACTTCAA 858
BSNT_05385___ 854 -TCGGGGATACAGC--TGTGCAGGCGGAGTCCTTTAGCAGCAAGGGATCC 900
||||....|||.| | |||| ||.|| |.|||..||||.||
BPUM_3190___f 859 TTCGGAACAACAACCAT-TGCA-GCAGA-----TCAGCTTCAAGTGA--- 898
BSNT_05385___ 901 CTTTT--------AGGATTTATAGAGTCTTACGGGTATATAACAGCAGAC 942
.|..| ||.|.||.|.|||.||||.||.||.||
BPUM_3190___f 899 ATGGTAAAGTAAAAGCACTTGTTGAGGCTTATGGCTACAT---------- 938
BSNT_05385___ 943 GGCCAA--------GAAAAGGGCGTATACCCGGAAATGCTTTCTGATCTT 984
|.||| |||||.||..|.||.||.|||||||||.|.||.||.
BPUM_3190___f 939 -GTCAAATGGTACTGAAAAAGGTATGTATCCAGAAATGCTTGCAGAGCTG 987
BSNT_05385___ 985 GACAATATGGCGCTTGAATTCGCGAAAG------------CTTTCAATGA 1022
|| ||||.|.||..||| |.||.||.||
BPUM_3190___f 988 GA------------TGAAGTAGCACAAGTATTTATGGATACATTTAACGA 1025
BSNT_05385___ 1023 AGTGCA----CAG-----------AAATGGTGTGACCAAGAGCGGTGAAC 1057
.||||| ||| |||||| ||..||||| ||
BPUM_3190___f 1026 TGTGCATAAGCAGGGGTACACGTTAAATGG------CACAAGCGG---AC 1066
BSNT_05385___ 1058 AAGGCGGAGACTTTTTTGATTTTACTGGCGGTGAA----ACTGAACCTGC 1103
| |||||||||||||.|| |.||| |.||||
BPUM_3190___f 1067 A------AGACTTTTTTGATATT-------GAGAATAACAATGAA----- 1098
BSNT_05385___ 1104 C-------AAGG-------GCGCGGCGGGCAAGATCAAAGTGGCTGACAG 1139
|||| ||.|| .||.||||||..|||...
BPUM_3190___f 1099 -TTAAATAAAGGATTAGCTGCTCG--------TATTAAAGTGAGTGATGT 1139
BSNT_05385___ 1140 CATATTAGATTCAAAAGGCGCA-AACATTGC----TTTCTCACTGACTGG 1184
|||.||||..||||.|| | ||.||.|| |.|||||.|.|
BPUM_3190___f 1140 CATTTTAGCATCAACAG----ATAATATCGCAGCATCTCTCAATCA---- 1181
BSNT_05385___ 1185 TGCAGCCAACGATAACGCA-------------AATGCTACAAAATTAGCA 1221
|||||| ||||||||.|||||||||
BPUM_3190___f 1182 -------------AACGCAAGGTGACGGTTCGAATGCTACGAAATTAGCA 1218
BSNT_05385___ 1222 AAT--------------GTTTTAACC-------GGTAAAATAACCATTAA 1250
||| ||| ||| ||.||.|.||| ||
BPUM_3190___f 1219 AATATACAAGACCTGAAGTT---ACCAATCGGTGGCAATACAAC----AA 1261
BSNT_05385___ 1251 CGGTAAAGAAACTAGTGTTTTAGATTATT------ATGCGGGTCTGATTG 1294
||.|..|| |||||.| ||| |.||||
BPUM_3190___f 1262 CGATCCAG--------------GATTACTACCAAAATG------TCATTG 1291
BSNT_05385___ 1295 GCGAGCTAGGGATCGAAGCTCAAGAGGCTAATCGAC-TGGCGTCTAATAC 1343
..|||.|.||||| ||||| ||..||...|| ||.|| ||
BPUM_3190___f 1292 CTGAGATGGGGAT------TCAAG-GGAAAAAGAACATGACG-CT----- 1328
BSNT_05385___ 1344 AGAAA-CA---CAGCTTAATGATGCTGAC-ATAAACCGTCAGCAAAT--- 1385
||||| || |||| ||.|..||.| || |||||.|||
BPUM_3190___f 1329 AGAAAGCAGTTCAGC----TGCTCTTGTCAAT------TCAGCCAATGAA 1368
BSNT_05385___ 1386 --------------GAGCGCAGTTTCTTTAGACGAAGAAATGACGAATAT 1421
|||.||.|||||..|.||.|||||||||||||||||
BPUM_3190___f 1369 CGTAGAATGTCGACGAGTGCTGTTTCCATTGATGAAGAAATGACGAATAT 1418
BSNT_05385___ 1422 GATTCAATTCCAACACGCATACAATGCAGCTGCAAGAATGGTGACTTTAC 1471
|||.|||||.||.||.|||||.|||||||||||.|||.|.|||||.||||
BPUM_3190___f 1419 GATCCAATTTCAGCATGCATATAATGCAGCTGCGAGAGTTGTGACATTAC 1468
BSNT_05385___ 1472 AAGACGAATTACTTGATAAAGTGATCAACGGTATGGGTGTTGGAGGAAGG 1521
||||.|||.||.|.||||||||.||.|||||.||||||||.|.|||||||
BPUM_3190___f 1469 AAGATGAAATATTGGATAAAGTAATAAACGGCATGGGTGTCGTAGGAAGG 1518
BSNT_05385___ 1522 TAG 1524
|||
BPUM_3190___f 1519 TAG 1521
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