Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05383 and BPUM_3188
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:00
# Commandline: needle
# -asequence dna-align/BSNT_05383___yviE.1.24716.seq
# -bsequence dna-align/BPUM_3188.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05383___yviE-BPUM_3188.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05383___yviE-BPUM_3188.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05383___yviE
# 2: BPUM_3188
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 641
# Identity: 370/641 (57.7%)
# Similarity: 370/641 (57.7%)
# Gaps: 127/641 (19.8%)
# Score: 919.5
#
#
#=======================================
BSNT_05383___ 1 ATGCAGATTCCCAGATTGATTATGCATAGTGTTCA-----AGGAAAAATT 45
|||||.||.||.||||||.|.||||| .|| |.|.|||..|
BPUM_3188 1 ATGCAAATCCCTAGATTGTTAATGCA------ACAAACCTATGCAAAGCT 44
BSNT_05383___ 46 GGTTTAACAA----CGACGCCTGCCAGCT----TAAAAATGGAGCAGCCT 87
| ||| ||||..|| |||.|| .|.||.|.|||||||||
BPUM_3188 45 G------CAAATGTCGACAACT-CCATCTCGTCAAGAAGTAGAGCAGCCT 87
BSNT_05383___ 88 CAAGCTGATCTAGAGATCGAACAGCCGAGTGCGGAAATGGAAATATC--- 134
..|||.||.||.||.||..|.|||||.|..||.|..||| ||||||
BPUM_3188 88 AGAGCGGACCTTGAAATTCAGCAGCCCAAAGCTGTTATG--AATATCAAA 135
BSNT_05383___ 135 -GGTGACACCTGGAAAACTCACGATTGACCAGACACAAGCATGGGAAGAA 183
| ||||||...||||.|.||.||.|||||.||..|.||||..|..||.
BPUM_3188 136 AG--GACACCGTCAAAATTAACTATAGACCAAACCGAGGCATTTGCCGAT 183
BSNT_05383___ 184 TTAGACAGAAAG--CATGTT------TTCAAGAGAATTGAAGAAGCCGCC 225
.|.||.|..||| .||.|| ||||..|||||.| |.|||||
BPUM_3188 184 ATGGATATCAAGTCAATTTTTAGGCGTTCAGAAGAATGG--GCAGCCG-- 229
BSNT_05383___ 226 CAACAAGGG----CATGAGGATGTAATGA-AGGGAATAGCGCGCACGGCA 270
|||| |.||..|.|| || |||||||.|..||.|.|||.
BPUM_3188 230 -----AGGGGAAACGTGCTGTTG----GAGAGGGAATGGGCCGAAGGGCG 270
BSNT_05383___ 271 GAAGAAGGCGACGAGCTTATGAGAATTGAAAATAAAGGGAACCCAATCGC 320
||||||||....||.||.||.|..||.||.|||...|||||..||||.||
BPUM_3188 271 GAAGAAGGTAGTGAACTCATCAAGATCGAGAATGGTGGGAATGCAATTGC 320
BSNT_05383___ 321 -----TT--CACAAGCAA-GGAGGAACTCTGAAATGCA-CCA---AATTC 358
|| .|.||.||| ||.|...||| || ||| |||||
BPUM_3188 321 CGAGTTTGCTAAAATCAATGGCGCTCCTC-------CAGCCAAACAATTC 363
BSNT_05383___ 359 A--ATTAGGCGAAAATTATGCT-CCTTCTCTATCTAGGGTGAAAATACAA 405
| |||.| |.||.| |||||..|.|.|||.||||||||.||.
BPUM_3188 364 ACCATTGG--------TGTGATCCCTTCATTCTTTAGTGTGAAAATTCAC 405
BSNT_05383___ 406 TATACTCCGTCACAGC------TTGATGTTCAGATTACGCCGCGAAAGCC 449
|||...||.||..||| |||||||..| |||.|.|||..|
BPUM_3188 406 TATCAGCCATCTGAGCTTCAAATTGATGTGGA------GCCTCAAAAAGC 449
BSNT_05383___ 450 TGTTATTCAGGCTGAGCCGCATAAGCCAATTGTTGAATATACGCCAGGAA 499
|.|.||..||||...|||.|||||.|||||.|||.|.||...||||||.|
BPUM_3188 450 TATCATAGAGGCAACGCCTCATAAACCAATCGTTAACTACCAGCCAGGTA 499
BSNT_05383___ 500 ATGTTAAGGTTGACATGCTCCAATACCCTGATTTAAATATAGATGTAGAA 549
|.||.||..||||.|||.|.||||||||.||||||||.|||||.||.||
BPUM_3188 500 AGGTCAATATTGATATGTTACAATACCCAGATTTAAAAATAGAAGTTGA- 548
BSNT_05383___ 550 TACCCGAAAGAATCAC---CCGAAAAG----TAA------- 576
|||| || ||.|||.| |||
BPUM_3188 549 ----CGAA------ACGGGCCAAAATGGTGATAAGGTATAG 579
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