Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05375 and BPUM_3183
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:00
# Commandline: needle
# -asequence dna-align/BSNT_05375___fliS.1.24716.seq
# -bsequence dna-align/BPUM_3183___fliS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05375___fliS-BPUM_3183___fliS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05375___fliS-BPUM_3183___fliS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05375___fliS
# 2: BPUM_3183___fliS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 429
# Identity: 286/429 (66.7%)
# Similarity: 286/429 (66.7%)
# Gaps: 51/429 (11.9%)
# Score: 875.0
#
#
#=======================================
BSNT_05375___ 1 ATGGCGATCCAAAATCCATATACAGCCTATCAGCAAAATTC-AGTGAATA 49
|||||.||.||.||.||.|||.|.|||||||||.||||||| |.|| |.|
BPUM_3183___f 1 ATGGCAATTCAGAACCCTTATGCCGCCTATCAGAAAAATTCTATTG-AGA 49
BSNT_05375___ 50 CGGCTACACCCGGGGAGCTGACGCTTATGCTGTATAATGGCTGTTTAAAA 99
|.||.|||||.|..|||.|||||||||||||.|||.|.|||||.|||||.
BPUM_3183___f 50 CTGCAACACCTGCTGAGTTGACGCTTATGCTTTATGAAGGCTGCTTAAAG 99
BSNT_05375___ 100 TTTATAAGACTTGCCTCTCAGGCCATTGAGAATGATGAT--ATGGAACGT 147
||.||||||||.||.....|.||||||.|.||.||.||| | |.||||
BPUM_3183___f 100 TTCATAAGACTCGCGAAGTATGCCATTCAAAAAGAGGATGCA-GAAACG- 147
BSNT_05375___ 148 AAAAATGAGAATCTGATTAAAGCGCAAAATATTATTCAGGAATTAAATTT 197
|.|||||.|||.||||..||.||.|||||.||.|||||.|||||||||.|
BPUM_3183___f 148 AGAAATGTGAACCTGAAAAAGGCTCAAAACATCATTCAAGAATTAAATGT 197
BSNT_05375___ 198 TACACTTAA------------CCGTAACATAGAGCTTTCCGCTTCCATGG 235
.|| ||||| .||||.||.|||| .||||
BPUM_3183___f 198 CAC-CTTAAATCGTTCTTATGACGTATCAAAGAG-----------TATGG 235
BSNT_05375___ 236 ---GTGCGATGTACGATTATATGTATCGAAGATTGGTACAGGCAAATATC 282
|| |||||.|||||.||.|||||.|||.||.|..|.||.|||.|.
BPUM_3183___f 236 CAAGT---ATGTATGATTACATTTATCGCAGACTGATTGAAGCTAATTTT 282
BSNT_05375___ 283 AAAAATGATACG--GGCATGCTGGCTGAGGTTGAAGGC--TATGTAACAG 328
.|||||| ||| |..|||.||..|||.||.|| || ||.|||||.|
BPUM_3183___f 283 CAAAATG--ACGAAGAGATGTTGAATGAAGTAGA--GCAATACGTAACGG 328
BSNT_05375___ 329 ATTTTCGCGATGCTTGGAAACAGGCCATTCAAAGTGAACGGAAGGACCGG 378
||||.||.|||||.|||||..|.|..|||||||..||.||.||.|..||.
BPUM_3183___f 329 ATTTCCGTGATGCGTGGAAGGAAGTTATTCAAAACGATCGAAAAGGGCGC 378
BSNT_05375___ 379 CAC----GGATCAGGCGGGATCGC-ATGA 402
||| ..||| |.||||||.| ||||
BPUM_3183___f 379 CACCACTCTATC--GGGGGATCTCTATGA 405
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