Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05370 and BPUM_3178
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:59
# Commandline: needle
# -asequence dna-align/BSNT_05370___secA.1.24716.seq
# -bsequence dna-align/BPUM_3178___secA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05370___secA-BPUM_3178___secA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05370___secA-BPUM_3178___secA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05370___secA
# 2: BPUM_3178___secA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2557
# Identity: 2019/2557 (79.0%)
# Similarity: 2019/2557 (79.0%)
# Gaps: 62/2557 ( 2.4%)
# Score: 7913.0
#
#
#=======================================
BSNT_05370___ 1 ATGCTTGGAATTTTAAATAAAATGTTTGATCCAACAAAACGTACGCTGAA 50
|||||||||||.|||||.|||.||||||||||.||.|||||||||.|.|.
BPUM_3178___s 1 ATGCTTGGAATCTTAAACAAAGTGTTTGATCCTACGAAACGTACGATCAG 50
BSNT_05370___ 51 TAGATACGAAAAAATTGCTAACGATATTGATGCGATTCGCG---GAGACT 97
.|.|||.|||||||..||.||.||.|||||.|| ||.|| .|||.|
BPUM_3178___s 51 CAAATATGAAAAAAAAGCAAATGAAATTGAAGC---TCTCGCTCAAGATT 97
BSNT_05370___ 98 ATGA-AAATCTCTCTGACGACGCGTT--GAAACATAAAACAATTGAATTT 144
..|| |||| |.||||||||.||.|| ||| |||||||.||.||||||
BPUM_3178___s 98 TCGAGAAAT-TATCTGACGAGGCTTTACGAA--ATAAAACGATCGAATTT 144
BSNT_05370___ 145 AAAGAGCGTCTTGAAAAAGGGGCGACAA----CGGATGATCTTCTTGTTG 190
|||||....|||||||||| ||||| .||||||.||..|.||||
BPUM_3178___s 145 AAAGAAAAACTTGAAAAAG----GACAATCCGTGGATGACCTGTTGGTTG 190
BSNT_05370___ 191 AAGCTTTCGCTGTTGTTCGAGAAGCTTCACGCCGCGTAACAGGTATGTTT 240
||||.||.||....|||||.||.||||||||||||||.|||||.|||||.
BPUM_3178___s 191 AAGCATTTGCAACGGTTCGCGAGGCTTCACGCCGCGTGACAGGAATGTTC 240
BSNT_05370___ 241 CCGTTTAAAGTCCAGCTCATGGGGGGCGTAGCGCTTCATGACGGAAATAT 290
||.|||||.||.||||||||||||||..|.|||||||||||.||.||.||
BPUM_3178___s 241 CCATTTAAGGTGCAGCTCATGGGGGGGATCGCGCTTCATGAAGGCAACAT 290
BSNT_05370___ 291 CGCGGAAATGAAAACAGGGGAAGGGAAAACATTAACGTCTACTCTGCCTG 340
|.|.||.|||||||||||.|||||.|||||.||.||.||.||..||||||
BPUM_3178___s 291 CTCTGAGATGAAAACAGGTGAAGGTAAAACGTTGACTTCAACAATGCCTG 340
BSNT_05370___ 341 TTTATTTAAATGCGTTAACAGGTAAAGGCGTACACGTCGTGACTGTCAAC 390
|||||||||||||..||.|.||.||||||||.|||.|.|||||.||||||
BPUM_3178___s 341 TTTATTTAAATGCTCTATCTGGAAAAGGCGTCCACATTGTGACAGTCAAC 390
BSNT_05370___ 391 GAATACTTGGCAAGCCGTGACGCTGAACAAATGGGGAAAATTTTCGAGTT 440
|||||.||||||||||||||.||.||..|||||||.||.|||||.||.||
BPUM_3178___s 391 GAATATTTGGCAAGCCGTGATGCAGAGGAAATGGGCAAGATTTTTGAATT 440
BSNT_05370___ 441 TCTCGGTCTGACTGTCGGCTTGAATTTAAACTCAATGTCA---AAAGACG 487
|||.||..|.||.||.|||||.||.|||||| |..|.| |||||.|
BPUM_3178___s 441 TCTTGGCTTAACGGTAGGCTTAAACTTAAAC---AGCTTAGACAAAGATG 487
BSNT_05370___ 488 AAAAACGGGAAGCTTATGCAGCTGACATTACTTACTCTACAAACAATGAG 537
|||||.|.|||||.|||||.|||||.|||||.||.||.|||||||||||.
BPUM_3178___s 488 AAAAAAGAGAAGCGTATGCCGCTGATATTACGTATTCAACAAACAATGAA 537
BSNT_05370___ 538 CTTGGCTTCGACTATTTGCGTGACAATATGGTTCTTTATAAAGAGCAGAT 587
||||||||.||||||||.||.||.||.|||||.|||||.||||||||.||
BPUM_3178___s 538 CTTGGCTTTGACTATTTACGAGATAACATGGTGCTTTACAAAGAGCAAAT 587
BSNT_05370___ 588 GGTTCAGCGCCCGCTTCATTTTGCGGTAATAGATGAAGTTGACTCTATTT 637
|||.||..|.||||||||||.|||.|||||.|||||.||||||||.||.|
BPUM_3178___s 588 GGTCCAAAGACCGCTTCATTATGCCGTAATCGATGAGGTTGACTCCATCT 637
BSNT_05370___ 638 TAATTGATGAAGCGAGAACACCTCTTATCATTTCTGGACAAGCTGCCAAA 687
||||||||||||||||||||||.|||||||||||||||||||||||.|||
BPUM_3178___s 638 TAATTGATGAAGCGAGAACACCGCTTATCATTTCTGGACAAGCTGCGAAA 687
BSNT_05370___ 688 TCCACTAAGCTGTACGTACAGGCAAATGCTTTTGTCCGTACGTTAAAAGC 737
||.||.|||||.||.|||||.||.|||||.|||||.|||||.||||||
BPUM_3178___s 688 TCTACAAAGCTTTATGTACAAGCGAATGCGTTTGTTCGTACATTAAAA-- 735
BSNT_05370___ 738 GGAGAAG--GATTACACGTACGATATCAAAACAAAAGCTGTACAGCTTAC 785
..||||| ||||.|||.||.|||||.|||||||||..|||||||||.||
BPUM_3178___s 736 ATAGAAGATGATTTCACATATGATATTAAAACAAAAAGTGTACAGCTGAC 785
BSNT_05370___ 786 TGAAGAAGGAATGACGAAGGCGGAAAAAGCGTTCGGCATCGATAACCTCT 835
.|||...|||||||||||||||||||||||.|||||||||||.|||.|.|
BPUM_3178___s 786 AGAAAGCGGAATGACGAAGGCGGAAAAAGCTTTCGGCATCGAGAACTTAT 835
BSNT_05370___ 836 TTGATGTGAAGCATGTCGCGCTCAACCACCATATCAACCAGGCCTTAAAA 885
|||||||.||.||||||||.||.|||||.||.|||...|||||..||||.
BPUM_3178___s 836 TTGATGTCAAACATGTCGCACTGAACCATCACATCGCTCAGGCGCTAAAG 885
BSNT_05370___ 886 GCTCACGTTGCGATGCAAAAGGACGTTGACTATGTAGTGGAAGACGGACA 935
||.||.||||||||||||||.||.||.||.|||||.||.|||||.||.||
BPUM_3178___s 886 GCACATGTTGCGATGCAAAAAGATGTGGATTATGTCGTTGAAGAAGGTCA 935
BSNT_05370___ 936 GGTTGTTATTGTTGATTCCTTCACGGGACGTCTGATGAAAGGCCGCCGCT 985
.||.|||||||||||.||.|||||.||||||||.||||||||.|||||.|
BPUM_3178___s 936 AGTGGTTATTGTTGACTCGTTCACAGGACGTCTCATGAAAGGACGCCGTT 985
BSNT_05370___ 986 ACAGTGAGGGGCTTCACCAAGCGATTGAAGCGAAGGAAGGGCTTGAGATT 1035
|.|||||.||.||.||.|||||.|||||.||.||.|||||.||.||..|.
BPUM_3178___s 986 ATAGTGAAGGTCTGCATCAAGCCATTGAGGCAAAAGAAGGTCTCGAAGTG 1035
BSNT_05370___ 1036 CAAAACGAAAGCATGACCTTGGCGACGATTACGTTCCAAAACTACTTCCG 1085
||.||||||||.||||||.|.||.|||||.||.|||||.|||||||||||
BPUM_3178___s 1036 CAGAACGAAAGTATGACCCTTGCAACGATCACATTCCAGAACTACTTCCG 1085
BSNT_05370___ 1086 AATGTACCAAAAACTTGCCGGTATGACGGGTACAGCTAAGACAGAGGAAG 1135
.|||||..||||.|||.|.||||||||.||||||||.||.||.||.||||
BPUM_3178___s 1086 TATGTATGAAAAGCTTTCTGGTATGACCGGTACAGCGAAAACGGAAGAAG 1135
BSNT_05370___ 1136 AAGAATTCCGCAACATCTACAACATGCAGGTTGTCACGATCCCTACCAAC 1185
||||||||||.|||||.|||||||||||||||||.||.|||||.||||||
BPUM_3178___s 1136 AAGAATTCCGTAACATTTACAACATGCAGGTTGTGACAATCCCGACCAAC 1185
BSNT_05370___ 1186 AGGCCTGTTGTCCGTGATGACCGTCCTGATTTAATTTACCGCACGATGGA 1235
...||.||.||.|||||||||.|.||||||||||||||||||||.|||||
BPUM_3178___s 1186 CAACCAGTCGTTCGTGATGACAGACCTGATTTAATTTACCGCACAATGGA 1235
BSNT_05370___ 1236 AGGAAAGTTTAAGGCAGTTGCGGAGGATGTCGCACAGCGTTACATGACGG 1285
|||.||.|||||.|||||.||.||.|||||.||.|||||.||.|||||.|
BPUM_3178___s 1236 AGGTAAATTTAAAGCAGTGGCTGAAGATGTTGCGCAGCGCTATATGACAG 1285
BSNT_05370___ 1286 GACAGCCTGTTCTAGTCGGTACGGTTGCCGTTGAAACATCTGAATTGATT 1335
|.||.||.|||||.|||||.||.||.||.|||||.||.|||||..|.|||
BPUM_3178___s 1286 GGCAACCAGTTCTTGTCGGAACAGTAGCGGTTGAGACGTCTGAGCTTATT 1335
BSNT_05370___ 1336 TCTAAGCTGCTTAAAAACAAAGGAATTCCGCATCAAGTGTTAAATGCCAA 1385
|||||||||||||||||.|||||.|||||.|||||||||||||||||.||
BPUM_3178___s 1336 TCTAAGCTGCTTAAAAATAAAGGGATTCCTCATCAAGTGTTAAATGCGAA 1385
BSNT_05370___ 1386 AAACCATGAACGTGAAGCGCAGATCATTGAAGAGGCCGGCCAAAAAGGCG 1435
|||||||||.|||||.||.||.||.|||||||||||.||.|||||.||.|
BPUM_3178___s 1386 AAACCATGAGCGTGAGGCACAAATTATTGAAGAGGCTGGTCAAAAGGGTG 1435
BSNT_05370___ 1436 CAGTTACGATTGCGACTAACATGGCGGGGCGCGGAACGGACATTAAGCTT 1485
|.||.||.||||||||.||||||||.||.||.||.||||||||.||||||
BPUM_3178___s 1436 CCGTCACCATTGCGACCAACATGGCAGGACGTGGTACGGACATCAAGCTT 1485
BSNT_05370___ 1486 GGCGAAGGTGTAAAAGAGCTTGGCGGACTCGCTGTTGTCGGAACAGAACG 1535
||||||||.||.|||||.||||||||.||.|||||..|.||.|||||.||
BPUM_3178___s 1486 GGCGAAGGCGTCAAAGAACTTGGCGGTCTAGCTGTCATTGGGACAGAGCG 1535
BSNT_05370___ 1536 ACATGAATCACGCCGGATTGACAATCAGCTTCGAGGTCGTTCCGGACGTC 1585
.|||||||||||.||.|||||.||.||||||||.||.|||||.||.||||
BPUM_3178___s 1536 TCATGAATCACGTCGTATTGATAACCAGCTTCGTGGACGTTCTGGTCGTC 1585
BSNT_05370___ 1586 AGGGAGACCCGGGGATTACTCAATTTTATCTTTCTATGGAAGATGAATTG 1635
|.||||||||.||||||||.|||||.|||||.||.||||||||||||||.
BPUM_3178___s 1586 AAGGAGACCCAGGGATTACCCAATTCTATCTCTCCATGGAAGATGAATTA 1635
BSNT_05370___ 1636 ATGCGCAGATTCGGAGCTGAGCGGACAATGGCGATGCTGGACCGCTTCGG 1685
||||||.||||.||.||.|||||.||.|||||.|||||.||||||||.||
BPUM_3178___s 1636 ATGCGCCGATTTGGTGCAGAGCGCACGATGGCAATGCTTGACCGCTTTGG 1685
BSNT_05370___ 1686 CATGGACGACTCTACTCCAATCCAAAGCAAAATGGTATCTCGCGCGGTTG 1735
.|||||.|||.||||.||.||||||||.||||||||.|||...||.||||
BPUM_3178___s 1686 TATGGATGACACTACGCCTATCCAAAGTAAAATGGTGTCTAAAGCCGTTG 1735
BSNT_05370___ 1736 AATCGTCTCAAAAACGAGTCGAAGGCAATAACTTCGATTCTCGTAAACAG 1785
||||.|||||||||||.||.||.|||||.|||||.|||||.|||||||||
BPUM_3178___s 1736 AATCATCTCAAAAACGTGTTGAGGGCAACAACTTTGATTCACGTAAACAG 1785
BSNT_05370___ 1786 CTTCTGCAATATGATGATGTTCTCCGCCAGCAGCGTGAGGTCATTTATAA 1835
||||||||||||||.|||||.||.||.|||||||||||.||.|||||.||
BPUM_3178___s 1786 CTTCTGCAATATGACGATGTGCTTCGTCAGCAGCGTGAAGTGATTTACAA 1835
BSNT_05370___ 1836 GCAGCGCTTTGAAGTCATTGACTCTGAAAACCTGCGTGAAATCG-TTG-- 1882
|||||||||||||||.|||||.|||||.|| |.|.|||||| |||
BPUM_3178___s 1836 GCAGCGCTTTGAAGTTATTGATTCTGATAA----CTTAAAATCGATTGTG 1881
BSNT_05370___ 1883 -AAAATATGATCAAGTCTTCTCTCGAACGCGCAATTGCAGCCTATACGCC 1931
..||||||||..|||||||..|.||.|||||..|||...|.||||||||
BPUM_3178___s 1882 ATCAATATGATTCAGTCTTCAATTGAGCGCGCTGTTGGTTCTTATACGCC 1931
BSNT_05370___ 1932 AAGAGAAGAGCTTCCTGAGGAGTGGAAGCTTGACGGTCTAGTTGATCTTA 1981
.|.||||||||||||.||.||.|||||.||.||.||.||.|||||..|.|
BPUM_3178___s 1932 GAAAGAAGAGCTTCCAGAAGAATGGAAACTAGATGGGCTTGTTGAATTAA 1981
BSNT_05370___ 1982 TCAACAC-AACTTATCTTGATGAAGGTGCGCTT---GAGAAGAGCGATAT 2027
||||||| ||| |||.|.||||||||.||..|| |..||| |||||
BPUM_3178___s 1982 TCAACACGAAC-TATTTAGATGAAGGAGCCATTTCGGTTAAG---GATAT 2027
BSNT_05370___ 2028 CTTCGGGAAAGAACCGGATGAAA-----TGCTTGAGCTCATTATGGATCG 2072
.|.|||.||||||.|.||||||| |.|| |||||||||||||
BPUM_3178___s 2028 TTACGGTAAAGAAGCAGATGAAATCACCTCCT-----TCATTATGGATCG 2072
BSNT_05370___ 2073 CATCATCACAAAATATAATGAGAAGGAAGAGCAATTCGGCAAAGAGCAAA 2122
.||.|....||||||..|||..||.|||||...||..|||.|.||.||||
BPUM_3178___s 2073 TATTAAAGAAAAATACGATGCAAAAGAAGAAACATATGGCGATGAACAAA 2122
BSNT_05370___ 2123 TGCGCGAATTCGAAAAAGTTATCGTTCTTCGTGCCGTTGATTCTAAATGG 2172
||||.|||||.||||||||.||||||||||||||.||.|||||.||.|||
BPUM_3178___s 2123 TGCGAGAATTTGAAAAAGTCATCGTTCTTCGTGCGGTGGATTCAAAGTGG 2172
BSNT_05370___ 2173 ATGGATCATATTGATGCGATGGATCAGCTTCGCCAAGGGATTCACCTTCG 2222
|||||||||||.|||||.||||||||.||.||.|||||||||||..|.||
BPUM_3178___s 2173 ATGGATCATATCGATGCAATGGATCAACTGCGTCAAGGGATTCATTTACG 2222
BSNT_05370___ 2223 TGCTTACGCGCAGACGAACCCTCTTCGTGAGTATCAAATGGAAGGTTTTG 2272
|||.||.||.||.||.||.||.|||||||||||||||||||||||.||||
BPUM_3178___s 2223 TGCGTATGCACAAACAAATCCGCTTCGTGAGTATCAAATGGAAGGATTTG 2272
BSNT_05370___ 2273 CGATGTTTGAGCATATGATTGAATCAATTGAGGACGAGGTCGCAAAATTT 2322
|||||||||||||||||.|.|..|||||.||.||.||.||.||.||||.|
BPUM_3178___s 2273 CGATGTTTGAGCATATGGTCGCTTCAATCGAAGATGATGTAGCCAAATAT 2322
BSNT_05370___ 2323 GTGATGAAAGCTGAGATTGAAAACAATCTGGAGCGTGAAGAGGTTGTACA 2372
||..|||||.|.||.||..|||||||..|.|||||||||||.||.||.||
BPUM_3178___s 2323 GTCTTGAAATCAGAAATCCAAAACAACTTAGAGCGTGAAGAAGTCGTTCA 2372
BSNT_05370___ 2373 AGGCCAAACAACAGCTCATCAGCCGCAAGAAGGCGACGATAACAAAAAAG 2422
|||.||||||||||||||||||||.|||||.||.||.||..|.||.|.||
BPUM_3178___s 2373 AGGGCAAACAACAGCTCATCAGCCTCAAGAGGGTGATGAGGAGAAGACAG 2422
BSNT_05370___ 2423 CAAAGAAAGCA-CCGGTTCGCAAAGTGGTTGATATCGGCCGAAATGCCCC 2471
..|| ||||.| |||||.||.||||||||.||.||.||.|||||..|.||
BPUM_3178___s 2423 TGAA-AAAGAAGCCGGTACGTAAAGTGGTAGACATTGGTCGAAACTCACC 2471
BSNT_05370___ 2472 ATGCCACTGCGGAAGCGGGAAAAAATATAAAAATTG--CTGCGGCCGTAC 2519
|||.||||||||||||||.||.|||||||||||||| .|| ||..| ||
BPUM_3178___s 2472 ATGTCACTGCGGAAGCGGCAAGAAATATAAAAATTGTCATG-GGAAG-AC 2519
BSNT_05370___ 2520 TGAATAG 2526
.|||||.
BPUM_3178___s 2520 AGAATAA 2526
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