Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05368 and BPUM_3173

See Amino acid alignment / Visit BSNT_05368 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:59
# Commandline: needle
#    -asequence dna-align/BSNT_05368___yvjA.1.24716.seq
#    -bsequence dna-align/BPUM_3173.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05368___yvjA-BPUM_3173.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05368___yvjA-BPUM_3173.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05368___yvjA
# 2: BPUM_3173
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 858
# Identity:     580/858 (67.6%)
# Similarity:   580/858 (67.6%)
# Gaps:          18/858 ( 2.1%)
# Score: 1756.0
# 
#
#=======================================

BSNT_05368___      1 ATGATGGACGTACGGAATAAAACATTGTGGATT-TTGCG--GGATTATGT     47
                     ||||.|.|.|.||   ||..|..|||.|||||| ..|||  ..||||..|
BPUM_3173          1 ATGAAGCAGGGAC---ATTCACAATTATGGATTGAAGCGAAAAATTACTT     47

BSNT_05368___     48 ATACATATTAGTAGGAGCAGCGATTACGGCCGTGTCCTTTAA----TGTA     93
                     .|.|||.|||.|.|||.||||.|||..|||..|....|||||    | ||
BPUM_3173         48 GTTCATTTTAATCGGATCAGCCATTGTGGCGATCGGATTTAACACGT-TA     96

BSNT_05368___     94 TTTTTGCTTCCGAACAAGATTGCCGCCGGCGGTGTCAGCGGGATCAGTAC    143
                     ||.|   |.|||||..||||||||||.||.|||||.|||||.||.|||||
BPUM_3173         97 TTAT---TACCGAATCAGATTGCCGCAGGTGGTGTGAGCGGTATTAGTAC    143

BSNT_05368___    144 GATTTTACAATCATATGGTTTTGAAGCAGCGTATGTACAGTGGATTATTA    193
                     ||||.|.||.||||..||.|||||.||.||.|||||.||||||....|.|
BPUM_3173        144 GATTATGCAGTCATTCGGCTTTGAGGCGGCATATGTGCAGTGGGGGCTCA    193

BSNT_05368___    194 ATATCCCTTTATTTATTGCTGGCGTCATTTTGCTCGGCGGGAAATTTGGG    243
                     |.||.||..|.|||||.|||||..|...|||..|.||.||.|.||||||.
BPUM_3173        194 ACATTCCACTGTTTATCGCTGGTTTTTATTTATTAGGTGGTACATTTGGC    243

BSNT_05368___    244 CTAAAGACGCTTGCTGGTTCTGTGTTTTTGCCGCTAGTTGTGTTTTTGAC    293
                     .|.||.|||||.|.|||.|||.|.||.||.||..|..|.||.|||.|.||
BPUM_3173        244 GTGAAAACGCTCGTTGGATCTATTTTCTTACCTTTGATGGTATTTGTTAC    293

BSNT_05368___    294 AAGGGATATT-CAGCCCGCCACTCATCATGAACTCTTGGCGGCGATTTTT    342
                     ||||.||||| || ||.|..||.|||.|.|..|||||.||.||.||.||.
BPUM_3173        294 AAGGCATATTGCA-CCTGTAACCCATGAAGCGCTCTTAGCAGCCATATTC    342

BSNT_05368___    343 GGCGGTGTCGGGATAGGTATCGGAATTGGTATTGTGTACTTAGGGAAAGG    392
                     ||.||.||.|.|||.||.||.|||||.||..|.||.|.|.|.||.||.||
BPUM_3173        343 GGTGGAGTAGTGATTGGGATAGGAATAGGGCTCGTATTCCTTGGAAACGG    392

BSNT_05368___    393 TTCGACGGGAGGAACAGCCTTGGCTGCACAGATCATTCATAAGTACTCCG    442
                     .||.||.||.|||||.||..|.|||||..|.|||||..||||.||..|.|
BPUM_3173        393 ATCAACAGGTGGAACGGCGCTCGCTGCTAAAATCATCAATAAATATACTG    442

BSNT_05368___    443 GTCTGTCATTGGGGAAGTGTCTCGCCATCATTGACGGAATGATCGTTGTT    492
                     |.||..|..|.||.|..|||.|.||.||.||.||.||..|.||.|||.|.
BPUM_3173        443 GCCTCACGCTTGGCACTTGTTTAGCGATGATGGATGGCTTAATTGTTCTC    492

BSNT_05368___    493 ACGGCTATGATTGTATTTAATATTGAGCAAGGCTTATATGCCATGCTTGG    542
                     .|.||.||||.|||.|||...|||||..|.||..|.||.||..|..||||
BPUM_3173        493 GCTGCGATGACTGTTTTTGGGATTGAAGAGGGGCTGTACGCTGTCATTGG    542

BSNT_05368___    543 CGTCTATGTGTCCAGCAAAACCATTGATGTTGTGCAAGTCGGCTTTAATC    592
                     .||.|.|.|.||.||.|||||.||||||||.||.||.|.||||||.|.||
BPUM_3173        543 TGTGTTTATTTCAAGTAAAACGATTGATGTCGTACAGGCCGGCTTCAGTC    592

BSNT_05368___    593 GTTCAAAAATGGCGCTCATCATTACAAAGCAGGAGCAGGCTGTCAAGGAG    642
                     .|||.||||||||..|.|||||||||..|||.|||.|.|..||.|...||
BPUM_3173        593 ATTCGAAAATGGCAATGATCATTACAGGGCATGAGGATGAAGTTAGACAG    642

BSNT_05368___    643 GCTGTCTTACAGAAGATTGACAGAGGCGTGACAAAAATCTCTGCAGTCGG    692
                     ||.||.||..|..|.||||||.|.||.||.|||||.||.||.||.|||||
BPUM_3173        643 GCAGTATTTGATCAAATTGACCGTGGTGTCACAAAGATTTCAGCCGTCGG    692

BSNT_05368___    693 CGGATATACTGATGATGACCGTCCGATTTTAATGTGCGTGGTTGGGCAAA    742
                     .|||||||||||..||||||||||.|||.|.|||||.||.||||||||..
BPUM_3173        693 AGGATATACTGACCATGACCGTCCAATTCTTATGTGTGTCGTTGGGCAGT    742

BSNT_05368___    743 CTGAATTCACCAAATTGAAACAAATCGTCAAA-CAGATTGATGAGTCAGC    791
                     |..|||||||.||.|||||||||.|.||.||| || ||.||||..|||||
BPUM_3173        743 CACAATTCACAAAGTTGAAACAAGTGGTGAAAGCA-ATCGATGCATCAGC    791

BSNT_05368___    792 TTTTGTGATTGTAGCAGACGCGAGCGAGGTGCTGGGCGAGGGTTTCAAAC    841
                     .|||||.||.|||...||.||.|..|||||.||.||.||||||||.|||.
BPUM_3173        792 ATTTGTCATCGTAATGGATGCAAAAGAGGTACTTGGTGAGGGTTTTAAAA    841

BSNT_05368___    842 GCGCTTAA    849
                     |.||.|||
BPUM_3173        842 GGGCGTAA    849


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05368 and BPUM_3173

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
